We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RRAS2 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
270.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
84.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
82.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
74.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
74.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
73.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
66.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
62.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
59.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
58.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
53.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
52.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
48.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
46.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
44.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
44.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
43.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
43.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
43.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
43.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
42.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
41.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
40.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
40.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
39.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
38.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
38.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
38.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
37.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
37.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
37.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
37.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
36.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
36.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
35.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
34.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
33.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
32.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
32.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
32.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
32.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
32.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
31.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
31.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
31.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
31.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
30.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
30.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
30.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
30.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
29.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
29.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
29.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
28.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
28.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
27.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
27.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
27.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
27.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
26.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
26.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
26.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
26.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
26.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
26.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
25.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
25.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
25.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
25.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
24.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
24.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
24.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
24.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
24.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
24.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
24.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
23.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
23.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
23.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
23.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
23.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
22.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
22.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
22.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
22.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
22.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
22.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
21.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
21.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
21.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
21.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
21.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
20.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
20.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
20.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
20.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
20.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
20.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
20.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
20.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
20.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
20.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
19.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
19.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
19.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
19.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
19.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
19.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
19.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
19.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
19.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
18.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
18.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
18.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
18.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
18.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
18.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
18.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
18.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
18.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
18.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
18.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
17.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
17.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
17.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
17.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
17.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
17.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
17.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
17.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
17.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
17.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
16.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
16.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
16.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
16.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
16.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
16.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
16.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
16.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
16.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
16.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
16.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
16.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
15.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
15.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
15.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
15.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
15.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
15.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
15.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
15.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
15.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
15.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
15.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
15.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
15.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
15.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
15.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
15.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
15.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
15.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
15.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
15.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
15.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
15.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
15.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
15.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
14.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
14.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
14.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
14.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
14.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
14.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
14.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
14.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
14.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
14.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
14.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
14.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
14.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
14.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
14.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
14.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
13.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
13.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
13.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
13.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
13.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
13.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
13.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
13.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
13.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
13.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
13.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
13.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
13.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
13.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
12.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
12.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
12.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
12.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
12.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
12.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
12.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
12.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
12.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
12.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
12.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
12.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
12.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
12.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
11.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
11.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
11.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
11.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
11.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
11.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
11.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
11.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
11.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
11.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
11.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
11.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
11.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
11.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
11.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
11.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
11.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
11.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
11.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
11.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
10.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
10.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
10.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
10.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
10.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
10.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
10.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
10.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
10.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
10.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
10.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
10.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
9.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
9.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
9.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
9.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
9.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
9.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
9.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
9.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
9.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
9.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
9.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
9.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
8.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
8.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
8.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
8.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
8.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
8.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
8.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
7.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
7.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
7.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
7.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
7.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
6.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
6.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
5.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RRAS2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.9
Number of samples
231
Samples
Sample
Description
TPM
DO45119
0 years, male, NA, stage:3, dead, 510 days
112.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
95.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
77.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
67.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
57.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
54.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
49.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
42.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
40.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
38.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
37.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
37.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
37.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
37.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
35.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
34.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
32.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
31.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
31.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
31.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
30.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
30.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
30.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
28.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
27.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
27.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
27.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
27.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
26.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
26.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
26.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
25.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
25.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
24.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
24.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
23.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
23.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
23.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
23.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
23.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
22.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
22.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
22.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
22.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
22.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
22.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
21.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
21.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
20.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
20.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
20.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
20.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
20.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
19.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
19.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
19.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
19.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
19.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
19.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
19.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
19.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
19.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
19.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
19.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
19.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
19.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
18.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
18.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
18.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
17.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
17.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
17.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
17.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
17.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
16.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
16.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
16.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
16.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
16.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
16.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
16.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
16.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
16.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
15.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
15.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
15.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
15.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
15.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
15.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
15.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
15.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
15.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
15.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
15.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
14.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
14.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
14.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
14.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
14.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
14.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
14.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
14.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
14.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
14.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
14.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
14.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
14.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
14.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
13.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
13.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
13.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
13.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
13.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
13.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
13.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
13.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
12.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
12.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
12.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
12.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
12.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
12.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
12.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
12.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
12.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
12.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
11.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
11.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
11.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
11.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
11.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
11.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
11.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
11.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
11.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
11.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
11.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
11.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
11.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
11.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
11.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
11.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
11.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
11.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
10.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
10.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
10.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
10.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
10.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
10.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
10.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
10.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
10.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
10.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
10.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
10.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
9.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
9.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
9.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
8.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
8.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
8.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
8.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
8.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
8.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
7.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
7.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
7.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
7.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
5.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
5.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
5.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
3.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
3.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
545
Tumor
1.0
285
Tumor
0.9
223
Tumor
0.7
635
Tumor
0.6
685
Tumor
0.6
737
Tumor
0.5
913
Tumor
0.5
425
Tumor
0.5
523
Tumor
0.5
958
Normal
0.5
968
Normal
0.4
137
Tumor
0.4
617
Tumor
0.4
1027
Tumor
0.4
187
Tumor
0.4
636
Normal
0.4
343
Tumor
0.4
228
Normal
0.4
484
Normal
0.4
723
Tumor
0.4
297
Tumor
0.4
527
Tumor
0.4
474
Normal
0.4
912
Normal
0.4
616
Normal
0.4
918
Normal
0.4
227
Tumor
0.4
421
Tumor
0.4
698
Normal
0.3
714
Normal
0.3
461
Tumor
0.3
412
Normal
0.3
554
Normal
0.3
745
Tumor
0.3
815
Tumor
0.3
426
Normal
0.3
618
Normal
0.3
487
Tumor
0.3
966
Normal
0.3
924
Normal
0.3
528
Normal
0.3
944
Normal
0.3
357
Tumor
0.3
363
Tumor
0.3
448
Normal
0.3
873
Tumor
0.3
125
Tumor
0.3
298
Normal
0.3
573
Tumor
0.3
964
Normal
0.3
128
Normal
0.3
482
Normal
0.3
778
Normal
0.3
628
Normal
0.3
445
Tumor
0.3
284
Normal
0.3
212
Normal
0.3
852
Normal
0.3
488
Normal
0.3
716
Normal
0.3
728
Normal
0.3
1032
Normal
0.3
572
Normal
0.3
816
Normal
0.3
546
Normal
0.3
824
Normal
0.3
686
Normal
0.2
818
Normal
0.2
642
Normal
0.2
1026
Normal
0.2
327
Tumor
0.2
746
Normal
0.2
538
Normal
0.2
955
Tumor
0.2
916
Normal
0.2
222
Normal
0.2
356
Normal
0.2
142
Normal
0.2
364
Normal
0.2
472
Normal
0.2
938
Normal
0.2
786
Normal
0.2
221
Tumor
0.2
696
Normal
0.2
353
Tumor
0.2
984
Normal
0.2
954
Normal
0.2
976
Normal
0.2
911
Tumor
0.2
526
Normal
0.2
648
Normal
0.2
742
Normal
0.2
1014
Normal
0.2
478
Normal
0.2
192
Normal
0.2
218
Normal
0.2
956
Normal
0.2
224
Normal
0.2
286
Normal
0.2
416
Normal
0.2
695
Tumor
0.2
1022
Normal
0.2
878
Normal
0.2
462
Normal
0.2
957
Tumor
0.2
882
Normal
0.2
388
Normal
0.2
147
Tumor
0.2
368
Normal
0.2
127
Tumor
0.2
744
Normal
0.2
436
Normal
0.2
952
Normal
0.2
862
Normal
0.2
414
Normal
0.2
536
Normal
0.2
196
Normal
0.2
756
Normal
0.2
456
Normal
0.2
1028
Normal
0.2
515
Tumor
0.2
564
Normal
0.2
982
Normal
0.2
1042
Normal
0.2
492
Normal
0.2
926
Normal
0.2
278
Normal
0.2
384
Normal
0.2
558
Normal
0.2
866
Normal
0.2
443
Tumor
0.1
424
Normal
0.1
534
Normal
0.1
312
Normal
0.1
868
Normal
0.1
922
Normal
0.1
518
Normal
0.1
146
Normal
0.1
864
Normal
0.1
1044
Normal
0.1
516
Normal
0.1
396
Normal
0.1
354
Normal
0.1
494
Normal
0.1
145
Tumor
0.1
574
Normal
0.1
455
Tumor
0.1
132
Normal
0.1
514
Normal
0.1
884
Normal
0.1
344
Normal
0.1
186
Normal
0.1
755
Tumor
0.1
533
Tumor
0.1
376
Normal
0.1
314
Normal
0.1
111
Normal
0.1
498
Normal
0.1
386
Normal
0.1
394
Normal
0.1
162
Normal
0.1
568
Normal
0.1
126
Normal
0.1
428
Normal
0.1
738
Normal
0.1
627
Tumor
0.1
422
Normal
0.1
468
Normal
0.1
851
Tumor
0.1
1045
Tumor
0.1
172
Normal
0.1
188
Normal
0.1
148
Normal
0.1
722
Normal
0.1
217
Tumor
0.1
664
Normal
0.1
672
Normal
0.1
392
Normal
0.1
858
Normal
0.1
466
Normal
0.1
563
Tumor
0.1
666
Normal
0.1
857
Tumor
0.1
777
Tumor
0.1
342
Normal
0.1
524
Normal
0.1
715
Tumor
0.1
446
Normal
0.1
214
Normal
0.1
332
Normal
0.1
1016
Normal
0.1
362
Normal
0.1
464
Normal
0.1
874
Normal
0.1
432
Normal
0.0
925
Tumor
0.0
366
Normal
0.0
863
Tumor
0.0
136
Normal
0.0
452
Normal
0.0
1046
Normal
0.0
415
Tumor
0.0
513
Tumor
0.0
1025
Tumor
0.0
352
Normal
0.0
131
Tumor
0.0
358
Normal
0.0
917
Tumor
0.0
114
Normal
0.0
444
Normal
0.0
981
Tumor
0.0
914
Normal
0.0
537
Tumor
0.0
328
Normal
0.0
138
Normal
0.0
232
Normal
0.0
662
Normal
0.0
975
Tumor
0.0
937
Tumor
0.0
921
Tumor
0.0
978
Normal
0.0
721
Tumor
0.0
963
Tumor
-0.1
615
Tumor
-0.1
481
Tumor
-0.1
1041
Tumor
-0.1
272
Normal
-0.1
257
Tumor
-0.1
393
Tumor
-0.1
434
Normal
-0.1
813
Tumor
-0.1
817
Tumor
-0.1
185
Tumor
-0.1
258
Normal
-0.1
943
Tumor
-0.1
124
Normal
-0.1
493
Tumor
-0.2
953
Tumor
-0.2
451
Tumor
-0.2
741
Tumor
-0.2
341
Tumor
-0.2
923
Tumor
-0.2
195
Tumor
-0.2
1043
Tumor
-0.2
483
Tumor
-0.2
431
Tumor
-0.2
463
Tumor
-0.2
491
Tumor
-0.2
785
Tumor
-0.2
567
Tumor
-0.2
283
Tumor
-0.2
517
Tumor
-0.2
262
Normal
-0.2
977
Tumor
-0.2
665
Tumor
-0.2
268
Normal
-0.2
135
Tumor
-0.2
213
Tumor
-0.2
471
Tumor
-0.2
1015
Tumor
-0.3
427
Tumor
-0.3
823
Tumor
-0.3
271
Tumor
-0.3
814
Normal
-0.3
191
Tumor
-0.3
171
Tumor
-0.3
311
Tumor
-0.3
713
Tumor
-0.3
1031
Tumor
-0.3
553
Tumor
-0.3
867
Tumor
-0.3
375
Tumor
-0.3
433
Tumor
-0.3
313
Tumor
-0.3
671
Tumor
-0.3
435
Tumor
-0.3
647
Tumor
-0.4
525
Tumor
-0.4
1021
Tumor
-0.4
641
Tumor
-0.4
113
Tumor
-0.4
465
Tumor
-0.4
391
Tumor
-0.4
697
Tumor
-0.4
497
Tumor
-0.4
277
Tumor
-0.4
447
Tumor
-0.4
881
Tumor
-0.4
663
Tumor
-0.4
861
Tumor
-0.5
865
Tumor
-0.5
883
Tumor
-0.5
365
Tumor
-0.5
361
Tumor
-0.5
423
Tumor
-0.5
112
Tumor
-0.5
413
Tumor
-0.5
467
Tumor
-0.5
141
Tumor
-0.5
967
Tumor
-0.6
267
Tumor
-0.6
387
Tumor
-0.6
877
Tumor
-0.6
211
Tumor
-0.6
161
Tumor
-0.6
477
Tumor
-0.6
383
Tumor
-0.6
385
Tumor
-0.6
367
Tumor
-0.6
535
Tumor
-0.6
557
Tumor
-0.6
331
Tumor
-0.6
355
Tumor
-0.7
1013
Tumor
-0.7
661
Tumor
-0.7
965
Tumor
-0.7
724
Normal
-0.7
571
Tumor
-0.8
411
Tumor
-0.8
395
Tumor
-0.8
727
Tumor
-0.8
951
Tumor
-0.9
261
Tumor
-0.9
983
Tumor
-0.9
123
Tumor
-0.9
915
Tumor
-1.0
351
Tumor
-1.1
473
Tumor
-1.2
231
Tumor
-1.3
743
Tumor
-1.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
