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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
15.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
7.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
6.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
6.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
3.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
2.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
2.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
2.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
2.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
2.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
2.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
2.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
2.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
2.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
2.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
2.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
2.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
2.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
1.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
1.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
1.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
1.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
1.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
1.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
1.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
1.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
0.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
0.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
0.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
0.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
0.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
0.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
0.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
0.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
0.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
0.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
0.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
0.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
0.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
0.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
0.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
0.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
0.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
0.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
0.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
0.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
0.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.4
Number of samples
231
Samples
Sample
Description
TPM
DO45299
0 years, female, NA, stage:1, alive, 1440 days
17.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
13.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
8.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
7.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
3.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
3.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
1.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
1.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
1.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
1.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
1.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
1.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
1.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
1.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
0.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
0.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
0.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
0.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
0.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
0.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
0.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
0.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
0.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
0.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
0.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
0.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
0.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
0.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
0.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
0.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
0.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
0.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
0.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
0.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
0.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
0.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
0.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
0.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
0.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
0.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
0.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
0.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
0.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
0.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
0.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
0.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
0.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
0.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
0.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
0.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
0.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
0.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
0.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
0.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
0.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
0.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
0.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
0.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
0.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
0.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
0.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
0.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
0.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
0.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
0.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
0.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
0.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
0.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
0.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
0.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
0.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
0.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
0.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
0.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
0.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
0.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
0.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
0.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
0.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
0.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
0.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
0.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
0.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
0.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
0.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
0.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
0.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
0.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
0.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
0.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
0.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
0.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
0.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
0.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
0.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
0.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
0.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
0.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
535
Tumor
1.9
488
Normal
1.8
498
Normal
1.7
494
Normal
1.6
671
Tumor
1.3
484
Normal
1.3
884
Normal
0.8
956
Normal
0.7
878
Normal
0.7
882
Normal
0.6
362
Normal
0.6
366
Normal
0.6
958
Normal
0.6
447
Tumor
0.5
938
Normal
0.5
954
Normal
0.5
697
Tumor
0.5
966
Normal
0.4
912
Normal
0.4
914
Normal
0.4
536
Normal
0.4
113
Tumor
0.4
722
Normal
0.4
376
Normal
0.3
1045
Tumor
0.3
955
Tumor
0.3
492
Normal
0.3
114
Normal
0.2
384
Normal
0.2
964
Normal
0.2
976
Normal
0.2
128
Normal
0.2
663
Tumor
0.2
368
Normal
0.1
365
Tumor
0.1
952
Normal
0.0
968
Normal
0.0
665
Tumor
0.0
911
Tumor
0.0
491
Tumor
-0.1
361
Tumor
-0.1
951
Tumor
-0.1
112
Tumor
-0.1
913
Tumor
-0.2
111
Normal
-0.2
124
Normal
-0.2
953
Tumor
-0.2
877
Tumor
-0.2
487
Tumor
-0.2
944
Normal
-0.2
686
Normal
-0.2
713
Tumor
-0.3
126
Normal
-0.3
493
Tumor
-0.3
375
Tumor
-0.3
383
Tumor
-0.4
883
Tumor
-0.4
975
Tumor
-0.4
967
Tumor
-0.5
1044
Normal
-0.5
647
Tumor
-0.5
448
Normal
-0.5
127
Tumor
-0.5
943
Tumor
-0.5
497
Tumor
-0.6
123
Tumor
-0.6
367
Tumor
-0.6
965
Tumor
-0.6
696
Normal
-0.7
881
Tumor
-0.7
1046
Normal
-0.7
648
Normal
-0.7
1043
Tumor
-0.8
716
Normal
-0.8
125
Tumor
-0.8
714
Normal
-0.8
483
Tumor
-0.8
963
Tumor
-0.9
666
Normal
-0.9
698
Normal
-1.0
721
Tumor
-1.0
685
Tumor
-1.1
672
Normal
-1.1
662
Normal
-1.1
937
Tumor
-1.3
664
Normal
-1.4
957
Tumor
-1.4
715
Tumor
-1.7
661
Tumor
-1.9
695
Tumor
-2.0
471
Tumor
N/A
351
Tumor
N/A
472
Normal
N/A
231
Tumor
N/A
352
Normal
N/A
473
Tumor
N/A
232
Normal
N/A
353
Tumor
N/A
474
Normal
N/A
354
Normal
N/A
355
Tumor
N/A
356
Normal
N/A
477
Tumor
N/A
357
Tumor
N/A
478
Normal
N/A
358
Normal
N/A
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
481
Tumor
N/A
482
Normal
N/A
363
Tumor
N/A
364
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
131
Tumor
N/A
132
Normal
N/A
135
Tumor
N/A
136
Normal
N/A
257
Tumor
N/A
137
Tumor
N/A
258
Normal
N/A
138
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
817
Tumor
N/A
818
Normal
N/A
261
Tumor
N/A
141
Tumor
N/A
262
Normal
N/A
142
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
145
Tumor
N/A
387
Tumor
N/A
146
Normal
N/A
267
Tumor
N/A
388
Normal
N/A
147
Tumor
N/A
268
Normal
N/A
148
Normal
N/A
823
Tumor
N/A
824
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
391
Tumor
N/A
271
Tumor
N/A
392
Normal
N/A
272
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
277
Tumor
N/A
1016
Normal
N/A
278
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
1013
Tumor
N/A
1032
Normal
N/A
1031
Tumor
N/A
161
Tumor
N/A
162
Normal
N/A
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
723
Tumor
N/A
724
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
1042
Normal
N/A
1041
Tumor
N/A
171
Tumor
N/A
172
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
851
Tumor
N/A
852
Normal
N/A
977
Tumor
N/A
615
Tumor
N/A
857
Tumor
N/A
978
Normal
N/A
616
Normal
N/A
737
Tumor
N/A
858
Normal
N/A
617
Tumor
N/A
738
Normal
N/A
618
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
981
Tumor
N/A
861
Tumor
N/A
982
Normal
N/A
741
Tumor
N/A
862
Normal
N/A
983
Tumor
N/A
742
Normal
N/A
863
Tumor
N/A
984
Normal
N/A
743
Tumor
N/A
864
Normal
N/A
744
Normal
N/A
865
Tumor
N/A
745
Tumor
N/A
866
Normal
N/A
746
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
513
Tumor
N/A
755
Tumor
N/A
514
Normal
N/A
635
Tumor
N/A
756
Normal
N/A
515
Tumor
N/A
636
Normal
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
641
Tumor
N/A
642
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
527
Tumor
N/A
528
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
533
Tumor
N/A
413
Tumor
N/A
534
Normal
N/A
414
Normal
N/A
777
Tumor
N/A
415
Tumor
N/A
778
Normal
N/A
416
Normal
N/A
537
Tumor
N/A
538
Normal
N/A
421
Tumor
N/A
422
Normal
N/A
785
Tumor
N/A
423
Tumor
N/A
786
Normal
N/A
424
Normal
N/A
545
Tumor
N/A
425
Tumor
N/A
546
Normal
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
431
Tumor
N/A
311
Tumor
N/A
432
Normal
N/A
553
Tumor
N/A
312
Normal
N/A
433
Tumor
N/A
554
Normal
N/A
313
Tumor
N/A
434
Normal
N/A
314
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
443
Tumor
N/A
564
Normal
N/A
444
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
567
Tumor
N/A
568
Normal
N/A
327
Tumor
N/A
328
Normal
N/A
571
Tumor
N/A
451
Tumor
N/A
572
Normal
N/A
331
Tumor
N/A
452
Normal
N/A
573
Tumor
N/A
211
Tumor
N/A
332
Normal
N/A
574
Normal
N/A
212
Normal
N/A
213
Tumor
N/A
455
Tumor
N/A
214
Normal
N/A
456
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
461
Tumor
N/A
341
Tumor
N/A
462
Normal
N/A
221
Tumor
N/A
342
Normal
N/A
463
Tumor
N/A
222
Normal
N/A
343
Tumor
N/A
464
Normal
N/A
223
Tumor
N/A
344
Normal
N/A
465
Tumor
N/A
224
Normal
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
