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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
WDR74 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
30.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
199.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
78.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
76.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
65.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
63.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
63.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
60.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
58.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
58.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
57.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
57.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
57.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
56.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
55.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
55.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
54.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
53.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
52.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
52.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
50.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
49.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
49.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
48.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
47.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
45.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
45.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
45.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
44.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
44.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
44.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
44.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
43.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
43.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
42.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
42.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
42.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
42.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
42.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
42.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
42.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
41.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
41.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
41.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
41.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
40.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
40.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
40.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
40.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
40.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
40.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
40.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
39.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
39.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
39.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
39.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
39.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
39.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
39.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
38.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
38.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
38.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
38.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
38.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
38.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
38.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
37.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
37.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
37.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
37.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
37.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
37.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
37.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
37.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
37.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
37.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
36.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
36.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
36.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
36.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
36.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
36.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
36.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
36.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
35.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
35.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
35.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
35.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
35.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
35.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
35.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
35.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
35.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
35.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
35.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
35.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
35.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
35.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
35.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
35.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
35.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
34.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
34.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
34.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
34.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
34.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
34.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
34.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
34.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
34.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
34.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
34.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
34.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
34.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
34.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
34.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
34.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
33.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
33.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
33.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
33.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
33.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
33.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
33.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
33.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
33.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
32.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
32.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
32.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
32.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
32.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
32.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
32.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
32.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
32.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
31.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
31.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
31.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
31.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
31.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
31.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
31.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
31.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
31.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
31.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
31.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
31.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
31.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
31.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
30.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
30.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
30.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
30.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
30.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
30.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
30.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
30.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
30.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
30.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
30.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
30.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
29.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
29.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
29.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
29.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
29.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
29.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
29.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
29.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
29.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
29.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
29.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
29.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
29.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
29.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
29.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
29.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
29.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
28.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
28.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
28.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
28.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
28.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
28.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
28.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
28.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
27.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
27.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
27.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
27.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
27.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
27.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
27.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
27.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
27.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
27.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
27.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
27.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
27.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
27.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
27.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
27.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
27.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
27.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
27.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
26.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
26.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
26.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
26.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
26.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
26.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
26.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
26.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
25.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
25.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
25.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
25.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
25.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
25.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
25.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
25.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
25.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
25.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
25.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
24.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
24.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
24.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
24.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
24.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
24.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
24.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
24.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
24.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
24.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
24.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
24.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
24.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
24.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
24.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
24.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
23.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
23.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
23.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
23.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
23.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
23.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
23.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
23.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
23.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
23.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
23.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
22.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
22.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
22.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
22.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
22.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
22.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
22.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
22.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
22.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
22.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
21.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
21.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
21.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
21.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
21.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
21.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
21.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
21.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
21.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
21.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
21.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
21.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
21.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
21.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
21.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
21.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
21.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
21.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
21.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
20.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
20.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
20.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
20.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
20.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
20.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
20.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
20.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
20.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
20.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
20.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
20.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
20.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
20.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
20.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
19.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
19.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
19.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
19.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
19.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
19.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
19.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
19.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
19.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
19.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
19.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
19.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
19.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
19.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
18.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
18.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
18.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
18.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
18.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
18.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
18.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
18.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
18.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
18.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
17.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
17.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
17.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
17.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
17.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
17.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
17.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
16.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
16.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
16.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
16.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
16.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
16.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
16.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
16.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
16.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
16.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
16.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
15.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
15.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
15.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
15.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
15.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
15.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
15.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
14.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
14.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
14.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
14.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
14.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
14.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
13.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
13.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
13.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
13.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
13.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
13.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
12.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
11.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
11.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
11.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
11.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
11.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
WDR74 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.5
Number of samples
231
Samples
Sample
Description
TPM
DO45149
0 years, female, NA, stage:2, alive, 1260 days
94.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
86.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
66.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
61.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
60.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
56.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
56.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
55.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
55.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
55.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
54.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
52.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
51.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
51.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
48.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
47.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
46.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
45.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
44.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
44.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
43.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
43.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
42.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
41.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
40.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
40.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
39.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
37.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
36.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
36.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
35.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
35.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
35.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
35.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
34.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
34.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
33.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
33.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
33.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
33.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
32.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
32.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
31.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
31.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
30.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
30.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
30.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
30.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
30.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
30.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
29.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
29.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
29.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
29.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
29.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
29.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
28.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
28.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
28.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
28.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
28.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
27.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
27.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
27.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
27.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
26.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
26.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
26.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
26.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
26.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
26.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
26.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
25.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
25.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
25.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
25.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
25.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
25.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
25.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
24.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
24.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
24.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
24.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
24.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
24.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
24.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
24.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
24.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
24.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
24.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
23.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
23.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
23.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
23.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
23.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
23.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
23.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
23.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
23.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
23.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
23.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
23.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
23.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
22.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
22.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
22.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
22.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
22.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
22.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
22.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
22.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
22.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
22.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
21.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
21.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
21.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
21.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
21.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
20.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
20.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
20.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
20.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
20.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
20.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
20.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
20.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
20.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
20.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
19.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
19.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
19.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
19.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
19.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
19.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
19.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
19.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
19.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
19.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
19.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
19.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
19.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
19.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
18.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
18.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
18.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
18.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
18.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
18.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
18.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
18.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
18.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
17.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
17.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
17.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
17.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
17.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
17.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
17.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
17.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
17.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
17.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
17.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
16.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
16.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
16.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
16.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
16.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
16.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
16.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
16.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
16.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
16.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
16.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
16.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
15.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
15.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
15.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
15.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
15.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
15.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
15.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
15.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
15.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
15.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
15.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
15.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
14.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
14.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
14.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
14.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
14.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
14.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
14.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
14.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
14.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
13.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
13.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
13.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
13.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
13.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
13.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
13.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
13.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
12.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
12.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
12.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
12.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
12.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
11.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
11.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
11.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
11.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
10.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
10.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
10.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
7.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
331
Tumor
1.3
685
Tumor
1.2
671
Tumor
1.0
123
Tumor
1.0
661
Tumor
1.0
537
Tumor
0.9
557
Tumor
0.9
951
Tumor
0.8
367
Tumor
0.8
351
Tumor
0.8
387
Tumor
0.8
635
Tumor
0.7
665
Tumor
0.7
395
Tumor
0.7
285
Tumor
0.6
227
Tumor
0.6
567
Tumor
0.6
533
Tumor
0.6
425
Tumor
0.6
865
Tumor
0.6
473
Tumor
0.6
427
Tumor
0.6
814
Normal
0.5
391
Tumor
0.5
413
Tumor
0.5
815
Tumor
0.5
283
Tumor
0.5
113
Tumor
0.5
483
Tumor
0.4
477
Tumor
0.4
211
Tumor
0.4
743
Tumor
0.4
431
Tumor
0.4
493
Tumor
0.4
353
Tumor
0.4
131
Tumor
0.4
423
Tumor
0.4
171
Tumor
0.4
385
Tumor
0.3
851
Tumor
0.3
513
Tumor
0.3
1041
Tumor
0.3
877
Tumor
0.3
813
Tumor
0.3
447
Tumor
0.3
737
Tumor
0.3
357
Tumor
0.3
861
Tumor
0.2
615
Tumor
0.2
647
Tumor
0.2
467
Tumor
0.2
443
Tumor
0.2
223
Tumor
0.2
112
Tumor
0.2
535
Tumor
0.2
213
Tumor
0.2
411
Tumor
0.2
663
Tumor
0.2
487
Tumor
0.2
313
Tumor
0.2
451
Tumor
0.2
135
Tumor
0.2
497
Tumor
0.2
525
Tumor
0.2
1021
Tumor
0.2
375
Tumor
0.2
1046
Normal
0.1
953
Tumor
0.1
393
Tumor
0.1
724
Normal
0.1
161
Tumor
0.1
162
Normal
0.1
465
Tumor
0.1
363
Tumor
0.1
433
Tumor
0.1
221
Tumor
0.1
361
Tumor
0.1
1045
Tumor
0.1
327
Tumor
0.1
424
Normal
0.1
715
Tumor
0.1
527
Tumor
0.1
463
Tumor
0.1
817
Tumor
0.1
426
Normal
0.1
937
Tumor
0.1
563
Tumor
0.1
977
Tumor
0.1
873
Tumor
0.1
523
Tumor
0.1
185
Tumor
0.1
925
Tumor
0.1
428
Normal
0.1
217
Tumor
0.1
482
Normal
0.0
1031
Tumor
0.0
127
Tumor
0.0
1013
Tumor
0.0
186
Normal
0.0
545
Tumor
0.0
571
Tumor
0.0
923
Tumor
0.0
435
Tumor
0.0
343
Tumor
0.0
191
Tumor
0.0
517
Tumor
0.0
172
Normal
0.0
641
Tumor
0.0
341
Tumor
0.0
422
Normal
0.0
983
Tumor
0.0
573
Tumor
0.0
627
Tumor
0.0
455
Tumor
0.0
858
Normal
0.0
187
Tumor
0.0
1027
Tumor
0.0
1015
Tumor
0.0
914
Normal
0.0
1025
Tumor
0.0
148
Normal
0.0
277
Tumor
0.0
466
Normal
0.0
617
Tumor
0.0
697
Tumor
0.0
414
Normal
0.0
355
Tumor
0.0
421
Tumor
0.0
472
Normal
0.0
616
Normal
0.0
446
Normal
0.0
461
Tumor
0.0
727
Tumor
0.0
128
Normal
0.0
636
Normal
0.0
922
Normal
0.0
618
Normal
0.0
342
Normal
0.0
383
Tumor
-0.1
976
Normal
-0.1
344
Normal
-0.1
546
Normal
-0.1
526
Normal
-0.1
137
Tumor
-0.1
943
Tumor
-0.1
921
Tumor
-0.1
818
Normal
-0.1
1026
Normal
-0.1
628
Normal
-0.1
745
Tumor
-0.1
232
Normal
-0.1
642
Normal
-0.1
491
Tumor
-0.1
434
Normal
-0.1
746
Normal
-0.1
967
Tumor
-0.1
111
Normal
-0.1
141
Tumor
-0.1
494
Normal
-0.1
471
Tumor
-0.1
392
Normal
-0.1
568
Normal
-0.1
278
Normal
-0.1
114
Normal
-0.1
388
Normal
-0.1
564
Normal
-0.1
445
Tumor
-0.1
975
Tumor
-0.1
824
Normal
-0.1
713
Tumor
-0.1
498
Normal
-0.1
913
Tumor
-0.1
478
Normal
-0.1
915
Tumor
-0.1
267
Tumor
-0.1
944
Normal
-0.1
881
Tumor
-0.1
444
Normal
-0.1
311
Tumor
-0.1
452
Normal
-0.1
352
Normal
-0.1
857
Tumor
-0.1
755
Tumor
-0.1
862
Normal
-0.1
534
Normal
-0.1
448
Normal
-0.1
462
Normal
-0.1
954
Normal
-0.1
536
Normal
-0.1
138
Normal
-0.1
332
Normal
-0.1
964
Normal
-0.2
261
Tumor
-0.2
415
Tumor
-0.2
553
Tumor
-0.2
698
Normal
-0.2
147
Tumor
-0.2
188
Normal
-0.2
145
Tumor
-0.2
1032
Normal
-0.2
314
Normal
-0.2
124
Normal
-0.2
864
Normal
-0.2
436
Normal
-0.2
918
Normal
-0.2
572
Normal
-0.2
884
Normal
-0.2
867
Tumor
-0.2
926
Normal
-0.2
963
Tumor
-0.2
882
Normal
-0.2
394
Normal
-0.2
744
Normal
-0.2
328
Normal
-0.2
1022
Normal
-0.2
866
Normal
-0.2
488
Normal
-0.2
878
Normal
-0.2
481
Tumor
-0.2
464
Normal
-0.2
1042
Normal
-0.2
484
Normal
-0.2
354
Normal
-0.2
574
Normal
-0.2
298
Normal
-0.2
823
Tumor
-0.2
672
Normal
-0.2
965
Tumor
-0.2
912
Normal
-0.2
142
Normal
-0.2
492
Normal
-0.2
816
Normal
-0.2
1014
Normal
-0.2
868
Normal
-0.2
258
Normal
-0.2
432
Normal
-0.2
524
Normal
-0.2
474
Normal
-0.2
786
Normal
-0.2
785
Tumor
-0.2
132
Normal
-0.3
195
Tumor
-0.3
1044
Normal
-0.3
558
Normal
-0.3
741
Tumor
-0.3
396
Normal
-0.3
297
Tumor
-0.3
538
Normal
-0.3
224
Normal
-0.3
756
Normal
-0.3
968
Normal
-0.3
917
Tumor
-0.3
376
Normal
-0.3
286
Normal
-0.3
957
Tumor
-0.3
368
Normal
-0.3
1028
Normal
-0.3
982
Normal
-0.3
981
Tumor
-0.3
528
Normal
-0.3
228
Normal
-0.3
312
Normal
-0.3
284
Normal
-0.3
136
Normal
-0.3
125
Tumor
-0.3
874
Normal
-0.3
412
Normal
-0.3
924
Normal
-0.3
257
Tumor
-0.3
468
Normal
-0.3
146
Normal
-0.3
664
Normal
-0.3
456
Normal
-0.3
738
Normal
-0.3
518
Normal
-0.3
272
Normal
-0.3
365
Tumor
-0.3
883
Tumor
-0.3
978
Normal
-0.3
1016
Normal
-0.3
778
Normal
-0.3
648
Normal
-0.4
514
Normal
-0.4
358
Normal
-0.4
196
Normal
-0.4
777
Tumor
-0.4
356
Normal
-0.4
662
Normal
-0.4
212
Normal
-0.4
984
Normal
-0.4
366
Normal
-0.4
384
Normal
-0.4
126
Normal
-0.4
911
Tumor
-0.4
955
Tumor
-0.4
554
Normal
-0.4
262
Normal
-0.4
386
Normal
-0.4
916
Normal
-0.4
721
Tumor
-0.4
722
Normal
-0.4
958
Normal
-0.4
714
Normal
-0.4
271
Tumor
-0.4
938
Normal
-0.4
515
Tumor
-0.4
214
Normal
-0.4
364
Normal
-0.4
728
Normal
-0.4
956
Normal
-0.4
362
Normal
-0.5
268
Normal
-0.5
742
Normal
-0.5
231
Tumor
-0.5
696
Normal
-0.5
1043
Tumor
-0.5
686
Normal
-0.5
666
Normal
-0.5
852
Normal
-0.5
416
Normal
-0.5
952
Normal
-0.5
516
Normal
-0.6
218
Normal
-0.6
695
Tumor
-0.6
716
Normal
-0.6
966
Normal
-0.6
723
Tumor
-0.6
222
Normal
-0.7
863
Tumor
-0.8
192
Normal
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
