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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
EPHB2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
2.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
61.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
26.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
26.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
22.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
22.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
21.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
20.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
20.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
18.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
18.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
16.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
16.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
15.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
14.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
14.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
13.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
12.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
11.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
10.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
9.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
9.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
9.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
9.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
8.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
8.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
7.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
6.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
5.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
5.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
4.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
4.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
4.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
4.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
4.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
4.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
4.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
4.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
3.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
3.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
3.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
3.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
3.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
3.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
2.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
2.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
2.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
2.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
2.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
2.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
2.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
2.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
2.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
2.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
2.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
2.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
2.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
2.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
2.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
2.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
1.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
1.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
1.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
1.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
1.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
1.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
1.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
1.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
1.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
1.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
1.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
1.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
1.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
1.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
1.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
1.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
1.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
1.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
1.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
1.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
1.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
1.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
1.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
1.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
1.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
1.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
1.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
1.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
0.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
0.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
0.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
0.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
0.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
0.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
0.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
0.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
0.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
EPHB2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
2.4
Number of samples
231
Samples
Sample
Description
TPM
DO45307
0 years, female, NA, stage:4, dead, 240 days
35.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
27.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
27.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
25.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
21.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
19.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
18.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
17.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
15.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
15.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
12.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
11.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
11.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
9.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
8.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
8.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
8.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
8.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
7.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
6.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
6.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
5.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
5.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
4.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
4.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
4.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
3.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
3.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
3.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
3.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
3.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
3.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
3.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
3.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
3.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
2.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
2.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
2.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
2.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
2.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
2.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
2.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
2.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
2.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
2.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
2.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
2.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
2.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
2.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
2.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
2.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
2.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
2.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
2.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
1.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
1.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
1.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
1.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
1.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
1.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
1.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
1.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
1.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
1.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
1.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
1.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
1.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
1.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
1.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
1.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
1.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
1.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
1.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
1.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
1.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
1.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
1.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
1.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
1.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
1.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
1.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
1.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
1.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
1.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
1.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
1.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
1.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
1.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
1.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
1.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
1.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
1.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
1.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
1.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
1.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
1.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
1.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
0.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
0.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
0.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
0.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
0.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
0.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
0.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
0.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
0.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
0.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
0.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
0.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
0.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
0.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
0.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
0.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
0.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
0.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
0.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
0.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
0.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
0.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
0.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
0.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
0.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
0.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
0.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
0.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
0.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
0.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
0.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
0.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
0.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
0.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
0.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
0.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
0.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
0.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
0.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
0.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
0.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
0.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
0.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
0.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
0.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
0.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
0.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
0.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
0.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
536
Normal
2.4
1043
Tumor
2.3
447
Tumor
2.2
1044
Normal
1.8
1041
Tumor
1.6
715
Tumor
1.5
535
Tumor
1.4
967
Tumor
1.3
915
Tumor
1.2
283
Tumor
1.0
977
Tumor
0.9
685
Tumor
0.9
231
Tumor
0.9
966
Normal
0.9
963
Tumor
0.8
976
Normal
0.8
943
Tumor
0.8
261
Tumor
0.8
285
Tumor
0.8
917
Tumor
0.7
311
Tumor
0.7
192
Normal
0.7
968
Normal
0.6
545
Tumor
0.6
867
Tumor
0.6
981
Tumor
0.6
425
Tumor
0.6
271
Tumor
0.5
478
Normal
0.5
268
Normal
0.5
131
Tumor
0.5
958
Normal
0.5
498
Normal
0.5
262
Normal
0.5
272
Normal
0.5
385
Tumor
0.5
698
Normal
0.5
195
Tumor
0.5
413
Tumor
0.5
224
Normal
0.4
126
Normal
0.4
861
Tumor
0.4
352
Normal
0.4
212
Normal
0.4
724
Normal
0.4
433
Tumor
0.4
911
Tumor
0.4
852
Normal
0.4
881
Tumor
0.4
297
Tumor
0.4
258
Normal
0.4
217
Tumor
0.4
816
Normal
0.4
492
Normal
0.4
386
Normal
0.4
343
Tumor
0.4
191
Tumor
0.3
713
Tumor
0.3
938
Normal
0.3
954
Normal
0.3
395
Tumor
0.3
364
Normal
0.3
553
Tumor
0.3
444
Normal
0.3
741
Tumor
0.3
1042
Normal
0.3
434
Normal
0.3
455
Tumor
0.3
232
Normal
0.3
471
Tumor
0.3
211
Tumor
0.3
494
Normal
0.3
213
Tumor
0.3
384
Normal
0.3
1032
Normal
0.3
354
Normal
0.3
697
Tumor
0.3
723
Tumor
0.3
298
Normal
0.3
877
Tumor
0.3
742
Normal
0.3
284
Normal
0.3
188
Normal
0.2
1026
Normal
0.2
813
Tumor
0.2
358
Normal
0.2
964
Normal
0.2
351
Tumor
0.2
524
Normal
0.2
956
Normal
0.2
228
Normal
0.2
363
Tumor
0.2
328
Normal
0.2
344
Normal
0.2
975
Tumor
0.2
186
Normal
0.2
464
Normal
0.2
342
Normal
0.2
451
Tumor
0.2
824
Normal
0.2
366
Normal
0.2
467
Tumor
0.2
916
Normal
0.2
138
Normal
0.2
136
Normal
0.2
463
Tumor
0.1
814
Normal
0.1
818
Normal
0.1
387
Tumor
0.1
185
Tumor
0.1
474
Normal
0.1
722
Normal
0.1
823
Tumor
0.1
124
Normal
0.1
518
Normal
0.1
391
Tumor
0.1
332
Normal
0.1
737
Tumor
0.1
415
Tumor
0.1
1028
Normal
0.1
223
Tumor
0.1
883
Tumor
0.1
412
Normal
0.1
628
Normal
0.1
484
Normal
0.1
375
Tumor
0.1
746
Normal
0.1
744
Normal
0.1
362
Normal
0.1
785
Tumor
0.1
278
Normal
0.1
456
Normal
0.1
738
Normal
0.1
172
Normal
0.1
965
Tumor
0.1
468
Normal
0.1
257
Tumor
0.1
396
Normal
0.1
416
Normal
0.1
482
Normal
0.1
952
Normal
0.1
636
Normal
0.1
146
Normal
0.1
686
Normal
0.1
538
Normal
0.1
874
Normal
0.0
171
Tumor
0.0
142
Normal
0.0
135
Tumor
0.0
388
Normal
0.0
392
Normal
0.0
488
Normal
0.0
145
Tumor
0.0
922
Normal
0.0
716
Normal
0.0
721
Tumor
0.0
526
Normal
0.0
267
Tumor
0.0
884
Normal
0.0
367
Tumor
0.0
187
Tumor
0.0
554
Normal
0.0
918
Normal
0.0
878
Normal
0.0
557
Tumor
0.0
148
Normal
0.0
1022
Normal
0.0
394
Normal
0.0
472
Normal
0.0
882
Normal
0.0
125
Tumor
0.0
162
Normal
0.0
493
Tumor
0.0
137
Tumor
0.0
778
Normal
0.0
376
Normal
0.0
462
Normal
0.0
516
Normal
0.0
926
Normal
0.0
534
Normal
0.0
428
Normal
0.0
786
Normal
0.0
696
Normal
0.0
982
Normal
-0.1
341
Tumor
-0.1
857
Tumor
-0.1
196
Normal
-0.1
421
Tumor
-0.1
858
Normal
-0.1
424
Normal
-0.1
866
Normal
-0.1
1031
Tumor
-0.1
218
Normal
-0.1
912
Normal
-0.1
356
Normal
-0.1
227
Tumor
-0.1
461
Tumor
-0.1
527
Tumor
-0.1
817
Tumor
-0.1
286
Normal
-0.1
368
Normal
-0.1
383
Tumor
-0.1
411
Tumor
-0.1
695
Tumor
-0.1
1015
Tumor
-0.1
914
Normal
-0.1
132
Normal
-0.1
978
Normal
-0.1
123
Tumor
-0.1
864
Normal
-0.1
714
Normal
-0.1
491
Tumor
-0.1
314
Normal
-0.1
141
Tumor
-0.1
868
Normal
-0.1
525
Tumor
-0.1
353
Tumor
-0.1
466
Normal
-0.1
728
Normal
-0.1
573
Tumor
-0.1
546
Normal
-0.2
477
Tumor
-0.2
331
Tumor
-0.2
422
Normal
-0.2
944
Normal
-0.2
473
Tumor
-0.2
1016
Normal
-0.2
483
Tumor
-0.2
355
Tumor
-0.2
114
Normal
-0.2
448
Normal
-0.2
528
Normal
-0.2
214
Normal
-0.2
222
Normal
-0.2
312
Normal
-0.2
357
Tumor
-0.2
111
Normal
-0.2
862
Normal
-0.2
1046
Normal
-0.2
436
Normal
-0.2
277
Tumor
-0.2
414
Normal
-0.2
924
Normal
-0.2
365
Tumor
-0.2
127
Tumor
-0.2
452
Normal
-0.2
921
Tumor
-0.2
913
Tumor
-0.2
574
Normal
-0.3
558
Normal
-0.3
481
Tumor
-0.3
443
Tumor
-0.3
756
Normal
-0.3
727
Tumor
-0.3
514
Normal
-0.3
537
Tumor
-0.3
361
Tumor
-0.3
423
Tumor
-0.3
445
Tumor
-0.3
161
Tumor
-0.3
923
Tumor
-0.3
393
Tumor
-0.3
1014
Normal
-0.3
426
Normal
-0.3
755
Tumor
-0.3
515
Tumor
-0.3
128
Normal
-0.3
984
Normal
-0.3
112
Tumor
-0.3
221
Tumor
-0.3
533
Tumor
-0.3
523
Tumor
-0.3
563
Tumor
-0.3
863
Tumor
-0.3
497
Tumor
-0.3
957
Tumor
-0.4
743
Tumor
-0.4
955
Tumor
-0.4
147
Tumor
-0.4
635
Tumor
-0.4
642
Normal
-0.4
983
Tumor
-0.4
517
Tumor
-0.4
641
Tumor
-0.4
925
Tumor
-0.4
113
Tumor
-0.4
618
Normal
-0.4
1025
Tumor
-0.5
513
Tumor
-0.5
617
Tumor
-0.5
616
Normal
-0.5
427
Tumor
-0.5
327
Tumor
-0.6
745
Tumor
-0.6
313
Tumor
-0.6
1021
Tumor
-0.6
851
Tumor
-0.6
487
Tumor
-0.7
446
Normal
-0.7
937
Tumor
-0.7
873
Tumor
-0.7
432
Normal
-0.7
815
Tumor
-0.8
465
Tumor
-0.8
777
Tumor
-0.8
1027
Tumor
-0.8
1013
Tumor
-0.8
615
Tumor
-0.9
567
Tumor
-0.9
564
Normal
-0.9
865
Tumor
-0.9
627
Tumor
-0.9
431
Tumor
-1.0
572
Normal
-1.1
568
Normal
-1.1
951
Tumor
-1.1
435
Tumor
-1.1
953
Tumor
-1.2
571
Tumor
-1.2
1045
Tumor
N/A
647
Tumor
N/A
648
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
663
Tumor
N/A
664
Normal
N/A
665
Tumor
N/A
666
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
