MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.6 nTPM
HPA Brain:17.4 nTPM
GTEx:10.6 nTPM
FANTOM5:28.2 Scaled Tags Per Million
Pig:17.4 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 17.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.1
2019 Male, age 18, unknown 19.0
2586 Male, age 75, left hemisphere 18.4
1870 Female, age 42, unknown 17.7
2219 Male, age 76, both hemispheres 16.9
1830 Male, age 51, unknown 16.2
1833 Male, age 53, unknown 16.2
2828 Female, age 72, unknown 15.8
2666 Male, age 74, left hemisphere 13.7
2411 Female, age 72, unknown 13.6
1827 Male, age 72, unknown 13.4
Dorsal raphe nucleus
nTPM: 15.5
2016 Female, age 72, unknown 16.3
2047 Male, age 72, unknown 16.2
1828 Male, age 53, unknown 16.1
2298 Female, age 72, unknown 15.3
2750 Male, age 76, both hemispheres 13.6
Inferior colliculus
nTPM: 17.4
2097 Female, age 72, unknown 19.5
1890 Male, age 53, unknown 17.9
2849 Male, age 72, unknown 17.1
1848 Female, age 42, unknown 15.2
Median raphe nucleus
nTPM: 14.2
2220 Male, age 76, midline 14.2
Periaquaductal grey, anterior
nTPM: 15.2
2502 Female, age 75, unknown 15.7
1947 Male, age 18, unknown 15.1
1795 Male, age 51, unknown 14.9
Periaquaductal grey, dorsal
nTPM: 15.3
1840 Male, age 53, unknown 17.0
2850 Male, age 76, both hemispheres 16.1
1831 Male, age 72, unknown 14.3
2464 Female, age 72, unknown 13.9
Periaquaductal grey, lateral
nTPM: 16.1
2053 Male, age 18, unknown 18.1
2272 Male, age 74, both hemispheres 15.2
2140 Male, age 76, both hemispheres 14.9
Pretectal area
nTPM: 15.8
1944 Female, age 72, unknown 17.8
2007 Male, age 72, unknown 17.8
1817 Female, age 42, unknown 16.7
2273 Male, age 74, both hemispheres 16.5
2667 Female, age 75, unknown 16.0
2407 Male, age 75, both hemispheres 15.9
2224 Female, age 72, unknown 15.8
1816 Male, age 51, unknown 15.2
1815 Male, age 53, unknown 14.6
2825 Male, age 18, unknown 14.1
2316 Male, age 76, right hemisphere 13.4
Red nucleus
nTPM: 16.1
1865 Male, age 51, unknown 18.9
1821 Female, age 72, unknown 17.6
2503 Female, age 72, unknown 16.9
2785 Male, age 18, unknown 16.9
2725 Female, age 75, unknown 16.7
1904 Male, age 53, unknown 16.3
1954 Female, age 42, unknown 16.1
2227 Male, age 72, unknown 15.9
2769 Male, age 72, unknown 15.5
2823 Male, age 76, right hemisphere 15.5
2588 Male, age 74, left hemisphere 14.9
2584 Male, age 75, left hemisphere 12.5
Substantia nigra
nTPM: 16.1
2409 Female, age 72, unknown 18.7
2583 Male, age 75, right hemisphere 17.8
2241 Male, age 72, unknown 17.3
1916 Female, age 42, unknown 16.4
1851 Male, age 51, unknown 16.3
1889 Female, age 72, unknown 16.1
2665 Male, age 74, both hemispheres 15.5
1941 Male, age 53, unknown 15.0
2699 Male, age 18, unknown 14.4
2590 Female, age 75, unknown 13.6
Superior colliculus
nTPM: 14.9
2668 Female, age 75, unknown 16.2
1995 Male, age 72, unknown 15.8
2664 Male, age 75, both hemispheres 15.8
1839 Male, age 51, unknown 15.6
1913 Female, age 42, unknown 15.2
2087 Female, age 72, unknown 14.8
1895 Male, age 76, right hemisphere 14.6
1796 Male, age 53, unknown 14.3
2587 Male, age 74, left hemisphere 13.8
2261 Male, age 18, unknown 13.2
Ventral tegmental area
nTPM: 15.7
2223 Female, age 72, unknown 17.6
1915 Female, age 42, unknown 17.0
2218 Male, age 76, both hemispheres 16.9
2021 Male, age 53, unknown 15.3
2410 Female, age 72, unknown 14.6
1942 Male, age 51, unknown 13.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 10.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.6
Samples: 139

Max nTPM: 16.2
Min nTPM: 6.9
Std nTPM: 1.6
Median nTPM: 10.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 16.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 14.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 14.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 14.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 14.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 13.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 13.4
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 13.4
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 13.3
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 13.2
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 13.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 28.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 28.2
FF:10158-103A5 76 years, female 28.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 17.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 15.7
Samples: 4

Max nTPM: 16.9
Min nTPM: 13.9
Sample A Female 16.4
Sample B Female 15.6
Sample C Male 16.9
Sample D Male 13.9
Midbrain
nTPM: 17.4
Samples: 4

Max nTPM: 18.5
Min nTPM: 15.4
Sample A Female 18.5
Sample B Female 15.4
Sample C Male 18.1
Sample D Male 17.6
Periaqueductal gray
nTPM: 14.8
Samples: 3

Max nTPM: 16.3
Min nTPM: 13.9
Sample B Female 14.2
Sample C Male 16.3
Sample D Male 13.9
Superior colliculi
nTPM: 17.3
Samples: 4

Max nTPM: 19.0
Min nTPM: 15.2
Sample A Female 19.0
Sample B Female 15.2
Sample C Male 18.7
Sample D Male 16.4

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