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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SCO1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
30.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
28.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
25.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
25.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
23.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
23.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
23.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
22.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
22.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
22.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
22.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
21.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
20.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
20.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
20.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
20.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
20.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
20.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
19.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
19.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
19.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
19.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
19.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
18.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
18.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
18.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
18.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
18.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
17.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
17.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
17.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
17.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
17.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
17.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
17.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
17.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
17.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
17.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
16.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
16.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
16.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
16.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
16.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
16.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
15.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
15.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
15.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
15.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
15.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
15.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
15.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
15.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
15.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
15.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
15.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
15.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
15.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
14.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
14.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
14.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
14.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
14.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
14.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
14.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
14.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
14.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
14.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
14.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
13.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
13.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
13.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
13.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
13.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
13.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
13.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
13.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
13.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
13.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
13.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
13.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
13.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
13.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
13.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
13.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
13.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
13.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
13.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
13.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
13.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
13.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
13.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
13.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
12.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
12.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
12.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
12.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
12.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
12.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
12.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
12.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
12.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
12.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
12.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
12.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
12.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
12.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
12.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
12.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
12.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
12.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
11.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
11.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
11.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
11.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
11.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
11.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
11.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
11.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
11.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
11.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
11.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
11.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
11.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
11.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
11.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
11.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
11.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
11.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
11.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
11.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
11.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
11.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
10.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
10.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
10.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
10.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
10.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
10.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
10.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
10.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
10.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
10.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
10.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
10.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
10.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
10.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
10.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
10.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
10.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
10.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
10.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
10.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
10.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
10.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
10.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
9.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
9.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
9.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
9.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
9.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
9.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
9.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
9.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
9.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
9.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
9.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
9.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
9.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
9.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
9.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
9.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
9.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
9.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
9.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
9.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
8.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
8.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
8.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
8.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
8.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
8.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
8.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
8.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
8.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
8.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
8.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
8.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
8.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
8.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
8.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
8.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
8.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
8.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
7.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
7.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
7.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
7.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
7.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
7.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
7.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
7.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
7.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
7.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
6.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
6.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
6.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
6.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
6.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
6.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
6.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
6.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
5.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
5.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SCO1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.7
Number of samples
231
Samples
Sample
Description
TPM
DO23508
0 years, female, NA, stage:2, alive, 390 days
54.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
38.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
30.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
28.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
25.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
25.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
25.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
24.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
24.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
23.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
23.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
22.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
22.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
22.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
22.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
21.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
21.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
21.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
21.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
20.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
20.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
20.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
19.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
18.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
18.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
18.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
18.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
18.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
18.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
18.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
18.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
17.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
17.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
17.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
17.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
17.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
17.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
17.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
17.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
17.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
16.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
16.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
16.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
16.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
16.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
16.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
16.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
16.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
16.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
16.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
16.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
15.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
15.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
15.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
15.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
15.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
15.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
15.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
15.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
15.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
14.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
14.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
14.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
14.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
14.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
14.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
14.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
14.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
14.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
14.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
14.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
13.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
13.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
13.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
13.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
13.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
13.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
13.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
13.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
13.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
13.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
13.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
13.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
13.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
13.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
13.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
13.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
13.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
13.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
12.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
12.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
12.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
12.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
12.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
12.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
12.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
12.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
12.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
12.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
12.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
12.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
12.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
12.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
11.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
11.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
11.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
11.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
11.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
11.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
11.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
11.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
11.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
11.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
11.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
11.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
11.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
10.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
10.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
10.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
10.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
10.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
10.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
10.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
10.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
10.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
10.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
10.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
10.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
10.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
10.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
10.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
10.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
10.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
10.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
9.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
9.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
9.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
9.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
9.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
9.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
9.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
9.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
9.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
9.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
9.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
8.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
8.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
8.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
8.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
8.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
8.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
8.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
8.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
7.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
7.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
7.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
7.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
7.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
6.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
6.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
6.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
6.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
6.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
6.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
5.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
627
Tumor
1.2
127
Tumor
0.9
665
Tumor
0.9
231
Tumor
0.9
452
Normal
0.8
648
Normal
0.8
915
Tumor
0.8
786
Normal
0.7
636
Normal
0.7
868
Normal
0.7
746
Normal
0.6
723
Tumor
0.6
558
Normal
0.6
715
Tumor
0.6
912
Normal
0.6
742
Normal
0.6
227
Tumor
0.6
462
Normal
0.6
145
Tumor
0.6
862
Normal
0.6
436
Normal
0.5
426
Normal
0.5
564
Normal
0.5
818
Normal
0.5
278
Normal
0.5
351
Tumor
0.5
218
Normal
0.5
162
Normal
0.5
738
Normal
0.5
664
Normal
0.5
714
Normal
0.5
884
Normal
0.5
824
Normal
0.5
618
Normal
0.5
864
Normal
0.5
342
Normal
0.5
414
Normal
0.5
172
Normal
0.5
882
Normal
0.5
615
Tumor
0.5
616
Normal
0.5
424
Normal
0.5
466
Normal
0.5
981
Tumor
0.5
394
Normal
0.5
666
Normal
0.5
392
Normal
0.5
1043
Tumor
0.5
534
Normal
0.5
358
Normal
0.4
568
Normal
0.4
186
Normal
0.4
132
Normal
0.4
114
Normal
0.4
874
Normal
0.4
628
Normal
0.4
422
Normal
0.4
866
Normal
0.4
722
Normal
0.4
148
Normal
0.4
744
Normal
0.4
388
Normal
0.4
1022
Normal
0.4
298
Normal
0.4
572
Normal
0.4
528
Normal
0.4
128
Normal
0.4
314
Normal
0.4
686
Normal
0.4
468
Normal
0.4
138
Normal
0.4
852
Normal
0.4
428
Normal
0.4
756
Normal
0.4
858
Normal
0.4
262
Normal
0.4
662
Normal
0.4
924
Normal
0.4
111
Normal
0.4
922
Normal
0.4
1032
Normal
0.4
332
Normal
0.4
642
Normal
0.4
366
Normal
0.4
137
Tumor
0.4
1046
Normal
0.4
376
Normal
0.4
214
Normal
0.4
142
Normal
0.4
362
Normal
0.4
232
Normal
0.4
873
Tumor
0.4
914
Normal
0.4
955
Tumor
0.4
716
Normal
0.4
126
Normal
0.3
113
Tumor
0.3
574
Normal
0.3
354
Normal
0.3
124
Normal
0.3
546
Normal
0.3
421
Tumor
0.3
755
Tumor
0.3
191
Tumor
0.3
641
Tumor
0.3
878
Normal
0.3
464
Normal
0.3
451
Tumor
0.3
816
Normal
0.3
416
Normal
0.3
146
Normal
0.3
954
Normal
0.3
196
Normal
0.3
222
Normal
0.3
344
Normal
0.3
228
Normal
0.3
286
Normal
0.3
728
Normal
0.3
446
Normal
0.3
514
Normal
0.3
1026
Normal
0.3
526
Normal
0.3
488
Normal
0.3
356
Normal
0.3
284
Normal
0.3
456
Normal
0.3
1016
Normal
0.3
696
Normal
0.3
258
Normal
0.3
212
Normal
0.3
982
Normal
0.3
698
Normal
0.3
396
Normal
0.3
557
Tumor
0.3
368
Normal
0.3
944
Normal
0.3
518
Normal
0.3
968
Normal
0.3
312
Normal
0.3
412
Normal
0.2
938
Normal
0.2
672
Normal
0.2
513
Tumor
0.2
851
Tumor
0.2
188
Normal
0.2
272
Normal
0.2
778
Normal
0.2
393
Tumor
0.2
482
Normal
0.2
484
Normal
0.2
136
Normal
0.2
352
Normal
0.2
976
Normal
0.2
386
Normal
0.2
328
Normal
0.2
363
Tumor
0.2
448
Normal
0.2
432
Normal
0.2
918
Normal
0.2
361
Tumor
0.2
472
Normal
0.2
1028
Normal
0.2
224
Normal
0.2
978
Normal
0.2
494
Normal
0.2
964
Normal
0.2
261
Tumor
0.2
1044
Normal
0.2
268
Normal
0.2
925
Tumor
0.1
965
Tumor
0.1
341
Tumor
0.1
434
Normal
0.1
966
Normal
0.1
958
Normal
0.1
865
Tumor
0.1
365
Tumor
0.1
713
Tumor
0.1
952
Normal
0.1
364
Normal
0.1
911
Tumor
0.1
474
Normal
0.1
444
Normal
0.1
984
Normal
0.1
926
Normal
0.1
1015
Tumor
0.1
384
Normal
0.1
1045
Tumor
0.1
563
Tumor
0.1
481
Tumor
0.0
1014
Normal
0.0
741
Tumor
0.0
123
Tumor
0.0
465
Tumor
0.0
538
Normal
0.0
1041
Tumor
0.0
745
Tumor
0.0
1042
Normal
0.0
423
Tumor
0.0
695
Tumor
0.0
916
Normal
0.0
478
Normal
0.0
956
Normal
0.0
554
Normal
-0.1
524
Normal
-0.1
516
Normal
-0.1
435
Tumor
-0.1
1031
Tumor
-0.1
135
Tumor
-0.1
192
Normal
-0.1
223
Tumor
-0.1
217
Tumor
-0.1
727
Tumor
-0.1
187
Tumor
-0.1
573
Tumor
-0.1
487
Tumor
-0.2
815
Tumor
-0.2
185
Tumor
-0.2
1027
Tumor
-0.2
721
Tumor
-0.2
141
Tumor
-0.2
112
Tumor
-0.2
785
Tumor
-0.2
492
Normal
-0.2
967
Tumor
-0.2
383
Tumor
-0.2
461
Tumor
-0.2
285
Tumor
-0.2
863
Tumor
-0.2
857
Tumor
-0.2
413
Tumor
-0.2
221
Tumor
-0.3
257
Tumor
-0.3
171
Tumor
-0.3
883
Tumor
-0.3
498
Normal
-0.3
477
Tumor
-0.3
195
Tumor
-0.3
367
Tumor
-0.3
867
Tumor
-0.3
525
Tumor
-0.3
467
Tumor
-0.3
375
Tumor
-0.3
975
Tumor
-0.3
515
Tumor
-0.3
491
Tumor
-0.4
427
Tumor
-0.4
921
Tumor
-0.4
957
Tumor
-0.4
671
Tumor
-0.4
425
Tumor
-0.4
635
Tumor
-0.4
567
Tumor
-0.4
777
Tumor
-0.4
517
Tumor
-0.4
685
Tumor
-0.4
267
Tumor
-0.4
433
Tumor
-0.4
161
Tumor
-0.4
297
Tumor
-0.4
861
Tumor
-0.4
353
Tumor
-0.4
431
Tumor
-0.4
395
Tumor
-0.4
131
Tumor
-0.5
943
Tumor
-0.5
411
Tumor
-0.5
415
Tumor
-0.5
443
Tumor
-0.5
313
Tumor
-0.5
447
Tumor
-0.5
953
Tumor
-0.5
814
Normal
-0.5
391
Tumor
-0.5
877
Tumor
-0.5
1025
Tumor
-0.5
661
Tumor
-0.5
213
Tumor
-0.6
537
Tumor
-0.6
937
Tumor
-0.6
125
Tumor
-0.6
571
Tumor
-0.6
663
Tumor
-0.6
536
Normal
-0.6
483
Tumor
-0.6
823
Tumor
-0.6
724
Normal
-0.6
533
Tumor
-0.6
963
Tumor
-0.6
535
Tumor
-0.7
545
Tumor
-0.7
913
Tumor
-0.7
743
Tumor
-0.7
697
Tumor
-0.7
147
Tumor
-0.7
977
Tumor
-0.7
271
Tumor
-0.7
813
Tumor
-0.7
647
Tumor
-0.8
617
Tumor
-0.8
473
Tumor
-0.8
357
Tumor
-0.8
881
Tumor
-0.8
553
Tumor
-0.8
331
Tumor
-0.8
445
Tumor
-0.8
951
Tumor
-0.8
737
Tumor
-0.8
387
Tumor
-0.8
917
Tumor
-0.8
327
Tumor
-0.9
385
Tumor
-0.9
497
Tumor
-0.9
455
Tumor
-0.9
311
Tumor
-1.0
283
Tumor
-1.0
277
Tumor
-1.0
1021
Tumor
-1.0
343
Tumor
-1.0
1013
Tumor
-1.1
527
Tumor
-1.1
817
Tumor
-1.1
463
Tumor
-1.1
923
Tumor
-1.1
493
Tumor
-1.1
211
Tumor
-1.2
983
Tumor
-1.3
355
Tumor
-1.3
523
Tumor
-1.3
471
Tumor
-1.3
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
