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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
POMP is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
66.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
197.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
183.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
160.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
141.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
139.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
137.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
130.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
129.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
124.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
124.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
124.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
119.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
118.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
118.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
117.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
117.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
116.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
116.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
115.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
114.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
112.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
110.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
107.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
104.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
104.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
104.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
103.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
103.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
102.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
102.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
100.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
100.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
99.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
98.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
97.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
97.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
96.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
96.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
96.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
94.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
94.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
93.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
92.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
92.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
91.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
91.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
91.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
90.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
89.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
89.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
89.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
88.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
87.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
87.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
87.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
87.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
86.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
86.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
85.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
85.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
84.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
84.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
83.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
83.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
82.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
82.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
82.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
81.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
81.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
81.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
81.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
80.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
80.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
80.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
80.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
80.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
80.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
80.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
80.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
79.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
79.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
79.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
78.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
77.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
77.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
77.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
77.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
77.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
77.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
77.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
76.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
76.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
76.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
76.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
76.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
75.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
75.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
75.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
75.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
75.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
75.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
74.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
74.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
74.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
74.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
74.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
73.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
73.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
73.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
73.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
73.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
73.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
73.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
72.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
72.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
72.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
72.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
71.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
71.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
70.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
70.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
70.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
70.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
69.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
69.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
69.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
69.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
69.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
69.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
69.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
69.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
69.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
68.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
68.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
68.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
67.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
67.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
67.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
67.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
67.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
67.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
67.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
66.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
66.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
66.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
66.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
66.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
66.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
66.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
66.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
66.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
66.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
66.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
65.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
65.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
65.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
65.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
65.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
64.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
64.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
64.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
64.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
64.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
64.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
64.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
64.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
64.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
64.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
63.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
63.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
63.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
63.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
63.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
63.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
63.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
62.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
62.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
62.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
62.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
62.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
62.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
62.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
62.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
62.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
62.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
62.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
61.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
61.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
61.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
61.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
61.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
61.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
61.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
61.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
61.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
60.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
60.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
60.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
60.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
59.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
59.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
59.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
59.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
59.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
58.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
58.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
58.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
58.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
58.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
58.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
58.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
58.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
58.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
58.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
57.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
57.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
57.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
57.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
57.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
57.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
57.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
57.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
57.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
56.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
56.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
56.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
56.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
56.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
56.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
56.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
56.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
56.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
55.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
55.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
55.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
55.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
55.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
54.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
54.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
54.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
54.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
54.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
54.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
54.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
54.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
54.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
54.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
54.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
53.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
53.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
53.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
52.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
52.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
52.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
52.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
52.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
52.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
52.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
52.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
51.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
51.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
51.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
51.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
51.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
50.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
50.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
50.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
50.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
50.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
50.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
50.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
50.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
50.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
49.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
49.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
49.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
49.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
49.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
49.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
48.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
48.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
48.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
47.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
47.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
47.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
47.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
47.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
47.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
47.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
47.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
46.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
46.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
46.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
46.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
45.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
45.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
45.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
45.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
44.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
44.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
44.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
44.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
44.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
44.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
44.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
44.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
44.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
44.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
44.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
44.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
43.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
43.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
43.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
43.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
42.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
42.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
42.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
42.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
42.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
42.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
42.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
42.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
41.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
40.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
40.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
40.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
40.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
40.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
39.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
39.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
39.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
39.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
39.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
38.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
37.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
37.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
37.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
37.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
37.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
36.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
36.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
36.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
35.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
35.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
34.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
32.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
32.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
32.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
32.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
31.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
31.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
31.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
29.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
27.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
27.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
25.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
25.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
24.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
23.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
22.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
20.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
POMP is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
56.2
Number of samples
231
Samples
Sample
Description
TPM
DO48747
0 years, male, NA, stage:3, alive, 540 days
269.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
160.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
154.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
153.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
146.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
140.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
130.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
127.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
118.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
114.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
113.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
111.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
106.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
97.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
94.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
93.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
92.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
91.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
90.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
88.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
86.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
84.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
83.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
83.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
83.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
81.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
80.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
80.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
80.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
79.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
78.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
78.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
77.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
77.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
74.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
74.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
74.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
74.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
73.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
72.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
72.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
72.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
71.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
71.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
70.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
69.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
69.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
68.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
68.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
68.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
68.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
68.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
68.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
68.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
68.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
67.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
67.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
66.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
66.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
66.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
66.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
66.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
65.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
65.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
65.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
65.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
64.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
64.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
63.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
63.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
62.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
62.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
61.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
61.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
60.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
60.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
59.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
59.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
58.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
58.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
58.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
58.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
58.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
58.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
58.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
58.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
57.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
57.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
57.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
56.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
56.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
56.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
56.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
56.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
55.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
55.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
54.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
54.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
54.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
54.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
53.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
53.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
53.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
53.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
52.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
52.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
52.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
52.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
52.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
51.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
51.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
51.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
51.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
50.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
50.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
50.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
50.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
49.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
49.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
49.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
49.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
49.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
48.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
48.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
47.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
47.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
47.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
47.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
47.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
47.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
46.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
46.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
46.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
46.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
46.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
46.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
45.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
45.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
45.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
44.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
44.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
44.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
44.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
44.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
43.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
43.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
43.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
43.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
43.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
43.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
42.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
42.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
42.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
41.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
41.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
41.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
41.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
41.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
41.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
40.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
40.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
40.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
40.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
40.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
40.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
39.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
39.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
38.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
38.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
38.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
38.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
38.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
37.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
37.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
37.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
37.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
37.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
37.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
37.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
36.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
36.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
36.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
36.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
36.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
36.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
36.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
36.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
35.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
35.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
35.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
35.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
35.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
35.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
35.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
34.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
34.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
34.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
34.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
33.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
33.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
33.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
33.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
33.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
33.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
33.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
32.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
32.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
31.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
31.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
31.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
31.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
30.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
30.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
30.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
30.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
29.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
29.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
28.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
28.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
28.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
26.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
26.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
26.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
21.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
21.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
19.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
18.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
17.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
17.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
16.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
10.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
911
Tumor
2.1
515
Tumor
1.7
227
Tumor
1.7
863
Tumor
1.5
473
Tumor
1.4
257
Tumor
1.4
161
Tumor
1.2
557
Tumor
1.1
647
Tumor
1.1
361
Tumor
1.1
817
Tumor
1.1
1041
Tumor
1.0
481
Tumor
0.9
615
Tumor
0.9
815
Tumor
0.9
423
Tumor
0.9
411
Tumor
0.9
477
Tumor
0.9
365
Tumor
0.9
483
Tumor
0.8
137
Tumor
0.8
467
Tumor
0.8
967
Tumor
0.8
923
Tumor
0.8
627
Tumor
0.8
617
Tumor
0.7
737
Tumor
0.7
461
Tumor
0.7
1027
Tumor
0.7
431
Tumor
0.7
191
Tumor
0.7
862
Normal
0.7
187
Tumor
0.7
943
Tumor
0.6
357
Tumor
0.6
385
Tumor
0.6
714
Normal
0.5
873
Tumor
0.5
777
Tumor
0.5
195
Tumor
0.5
384
Normal
0.4
861
Tumor
0.4
445
Tumor
0.4
422
Normal
0.4
665
Tumor
0.4
393
Tumor
0.4
1025
Tumor
0.4
981
Tumor
0.4
813
Tumor
0.4
663
Tumor
0.4
1031
Tumor
0.4
426
Normal
0.4
661
Tumor
0.4
471
Tumor
0.4
957
Tumor
0.4
912
Normal
0.4
415
Tumor
0.4
341
Tumor
0.3
528
Normal
0.3
127
Tumor
0.3
482
Normal
0.3
913
Tumor
0.3
132
Normal
0.3
523
Tumor
0.3
664
Normal
0.3
363
Tumor
0.3
671
Tumor
0.3
362
Normal
0.3
148
Normal
0.3
474
Normal
0.3
368
Normal
0.3
424
Normal
0.3
376
Normal
0.3
145
Tumor
0.3
366
Normal
0.3
375
Tumor
0.3
953
Tumor
0.2
728
Normal
0.2
331
Tumor
0.2
527
Tumor
0.2
648
Normal
0.2
744
Normal
0.2
698
Normal
0.2
534
Normal
0.2
222
Normal
0.2
1021
Tumor
0.2
553
Tumor
0.2
131
Tumor
0.2
213
Tumor
0.2
917
Tumor
0.2
135
Tumor
0.2
428
Normal
0.2
478
Normal
0.2
666
Normal
0.2
727
Tumor
0.2
466
Normal
0.2
456
Normal
0.2
951
Tumor
0.2
878
Normal
0.2
685
Tumor
0.2
468
Normal
0.2
484
Normal
0.2
818
Normal
0.2
343
Tumor
0.2
297
Tumor
0.2
185
Tumor
0.2
977
Tumor
0.2
884
Normal
0.2
342
Normal
0.2
298
Normal
0.2
353
Tumor
0.1
882
Normal
0.1
513
Tumor
0.1
172
Normal
0.1
448
Normal
0.1
857
Tumor
0.1
672
Normal
0.1
356
Normal
0.1
364
Normal
0.1
563
Tumor
0.1
535
Tumor
0.1
464
Normal
0.1
662
Normal
0.1
738
Normal
0.1
427
Tumor
0.1
136
Normal
0.1
814
Normal
0.1
112
Tumor
0.1
786
Normal
0.1
314
Normal
0.1
616
Normal
0.1
746
Normal
0.1
283
Tumor
0.1
421
Tumor
0.1
742
Normal
0.1
186
Normal
0.1
492
Normal
0.1
462
Normal
0.1
472
Normal
0.0
618
Normal
0.0
1022
Normal
0.0
546
Normal
0.0
877
Tumor
0.0
573
Tumor
0.0
162
Normal
0.0
866
Normal
0.0
311
Tumor
0.0
881
Tumor
0.0
414
Normal
0.0
858
Normal
0.0
232
Normal
0.0
1032
Normal
0.0
312
Normal
0.0
284
Normal
0.0
722
Normal
0.0
716
Normal
0.0
313
Tumor
0.0
352
Normal
0.0
223
Tumor
0.0
224
Normal
0.0
494
Normal
0.0
258
Normal
0.0
146
Normal
0.0
713
Tumor
0.0
332
Normal
0.0
1015
Tumor
0.0
824
Normal
0.0
214
Normal
0.0
823
Tumor
0.0
433
Tumor
0.0
383
Tumor
0.0
413
Tumor
0.0
741
Tumor
0.0
918
Normal
0.0
1046
Normal
0.0
221
Tumor
0.0
983
Tumor
0.0
228
Normal
0.0
968
Normal
-0.1
278
Normal
-0.1
778
Normal
-0.1
138
Normal
-0.1
196
Normal
-0.1
354
Normal
-0.1
497
Tumor
-0.1
696
Normal
-0.1
642
Normal
-0.1
1042
Normal
-0.1
723
Tumor
-0.1
493
Tumor
-0.1
756
Normal
-0.1
1044
Normal
-0.1
952
Normal
-0.1
864
Normal
-0.1
851
Tumor
-0.1
958
Normal
-0.1
628
Normal
-0.1
192
Normal
-0.1
533
Tumor
-0.1
944
Normal
-0.1
212
Normal
-0.1
745
Tumor
-0.1
416
Normal
-0.1
355
Tumor
-0.1
188
Normal
-0.1
1045
Tumor
-0.1
536
Normal
-0.1
955
Tumor
-0.1
328
Normal
-0.1
697
Tumor
-0.1
816
Normal
-0.1
286
Normal
-0.1
452
Normal
-0.1
976
Normal
-0.1
271
Tumor
-0.1
574
Normal
-0.1
432
Normal
-0.1
498
Normal
-0.1
785
Tumor
-0.1
1014
Normal
-0.1
564
Normal
-0.1
874
Normal
-0.1
984
Normal
-0.1
218
Normal
-0.1
141
Tumor
-0.1
1026
Normal
-0.1
636
Normal
-0.1
572
Normal
-0.2
211
Tumor
-0.2
455
Tumor
-0.2
491
Tumor
-0.2
695
Tumor
-0.2
217
Tumor
-0.2
451
Tumor
-0.2
715
Tumor
-0.2
444
Normal
-0.2
272
Normal
-0.2
351
Tumor
-0.2
721
Tumor
-0.2
558
Normal
-0.2
956
Normal
-0.2
446
Normal
-0.2
868
Normal
-0.2
867
Tumor
-0.2
965
Tumor
-0.2
982
Normal
-0.2
978
Normal
-0.2
926
Normal
-0.2
488
Normal
-0.2
852
Normal
-0.2
916
Normal
-0.2
1013
Tumor
-0.2
975
Tumor
-0.2
435
Tumor
-0.2
924
Normal
-0.2
465
Tumor
-0.2
344
Normal
-0.2
937
Tumor
-0.2
922
Normal
-0.2
358
Normal
-0.3
128
Normal
-0.3
412
Normal
-0.3
568
Normal
-0.3
147
Tumor
-0.3
171
Tumor
-0.3
436
Normal
-0.3
554
Normal
-0.3
262
Normal
-0.3
425
Tumor
-0.3
516
Normal
-0.3
686
Normal
-0.3
883
Tumor
-0.3
938
Normal
-0.3
514
Normal
-0.3
915
Tumor
-0.3
1016
Normal
-0.3
327
Tumor
-0.3
963
Tumor
-0.3
268
Normal
-0.3
387
Tumor
-0.3
447
Tumor
-0.4
724
Normal
-0.4
954
Normal
-0.4
261
Tumor
-0.4
635
Tumor
-0.4
964
Normal
-0.4
1028
Normal
-0.4
966
Normal
-0.4
865
Tumor
-0.4
395
Tumor
-0.4
434
Normal
-0.4
545
Tumor
-0.4
743
Tumor
-0.4
142
Normal
-0.4
1043
Tumor
-0.4
755
Tumor
-0.4
925
Tumor
-0.4
538
Normal
-0.4
641
Tumor
-0.4
367
Tumor
-0.4
277
Tumor
-0.5
113
Tumor
-0.5
518
Normal
-0.5
571
Tumor
-0.5
443
Tumor
-0.5
111
Normal
-0.5
126
Normal
-0.5
517
Tumor
-0.5
567
Tumor
-0.5
524
Normal
-0.6
463
Tumor
-0.6
386
Normal
-0.6
396
Normal
-0.6
285
Tumor
-0.6
921
Tumor
-0.6
388
Normal
-0.6
526
Normal
-0.6
231
Tumor
-0.6
914
Normal
-0.7
391
Tumor
-0.7
525
Tumor
-0.7
267
Tumor
-0.7
114
Normal
-0.7
392
Normal
-0.7
125
Tumor
-0.8
394
Normal
-0.9
123
Tumor
-0.9
124
Normal
-1.0
487
Tumor
-1.0
537
Tumor
-1.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
