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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FBXO44 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
70.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
52.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
48.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
47.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
47.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
47.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
46.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
44.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
43.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
41.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
40.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
39.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
38.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
38.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
38.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
38.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
37.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
37.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
37.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
35.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
35.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
35.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
34.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
33.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
33.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
32.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
32.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
32.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
32.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
32.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
31.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
31.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
31.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
31.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
30.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
30.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
30.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
29.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
29.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
29.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
29.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
29.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
28.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
28.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
28.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
28.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
27.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
26.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
26.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
26.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
25.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
25.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
25.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
25.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
24.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
24.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
24.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
24.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
24.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
24.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
24.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
23.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
23.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
23.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
23.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
23.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
23.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
23.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
23.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
23.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
23.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
22.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
22.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
22.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
22.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
22.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
22.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
21.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
21.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
21.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
21.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
21.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
21.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
21.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
21.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
21.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
21.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
20.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
20.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
20.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
20.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
20.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
20.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
20.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
20.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
20.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
19.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
19.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
19.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
19.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
19.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
19.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
19.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
19.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
19.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
18.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
18.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
18.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
18.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
18.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
18.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
18.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
18.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
18.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
18.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
17.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
17.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
17.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
17.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
17.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
17.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
17.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
17.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
17.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
17.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
17.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
17.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
17.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
17.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
17.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
16.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
16.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
16.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
16.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
16.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
16.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
16.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
16.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
16.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
16.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
16.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
16.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
16.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
16.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
16.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
16.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
16.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
16.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
16.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
16.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
16.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
16.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
15.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
15.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
15.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
15.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
15.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
15.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
15.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
15.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
15.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
15.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
15.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
15.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
15.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
15.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
15.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
15.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
14.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
14.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
14.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
14.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
14.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
14.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
14.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
14.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
14.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
14.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
14.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
14.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
14.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
14.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
14.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
14.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
13.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
13.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
13.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
13.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
13.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
13.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
13.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
13.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
13.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
13.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
13.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
13.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
13.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
13.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
12.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
12.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
12.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
12.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
12.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
12.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
12.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
12.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
12.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
11.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
11.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
11.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
11.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
11.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
11.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
11.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
11.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
11.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
11.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
11.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
11.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
11.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
11.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
11.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
11.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
11.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
11.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
10.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
10.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
10.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
10.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
10.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
10.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
10.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
10.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
10.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
10.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
10.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
10.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
10.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
10.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
10.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
10.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
10.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
9.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
9.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
9.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
9.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
9.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
9.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
9.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
9.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
9.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
9.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
9.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
9.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
8.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
8.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
8.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
8.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
8.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
8.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
8.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
7.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
7.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
7.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
7.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
6.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
6.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
6.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
5.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
5.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
4.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
3.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
3.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
3.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
2.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FBXO44 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.8
Number of samples
231
Samples
Sample
Description
TPM
DO23532
0 years, female, NA, stage:1, alive, 960 days
40.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
34.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
30.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
28.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
28.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
27.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
27.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
26.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
26.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
25.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
25.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
25.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
25.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
24.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
24.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
24.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
23.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
23.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
23.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
22.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
22.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
22.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
22.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
20.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
20.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
20.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
20.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
19.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
18.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
18.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
17.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
17.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
17.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
17.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
17.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
16.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
16.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
16.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
16.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
15.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
15.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
15.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
15.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
15.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
15.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
15.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
15.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
14.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
14.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
14.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
14.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
14.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
14.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
14.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
14.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
13.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
13.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
13.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
13.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
13.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
13.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
13.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
13.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
13.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
13.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
12.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
12.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
12.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
12.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
12.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
12.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
12.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
12.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
12.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
12.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
12.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
12.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
12.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
12.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
11.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
11.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
11.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
11.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
11.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
11.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
11.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
10.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
10.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
10.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
10.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
10.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
10.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
10.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
10.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
10.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
9.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
9.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
9.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
9.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
9.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
9.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
8.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
8.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
8.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
8.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
8.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
8.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
7.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
7.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
7.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
7.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
7.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
7.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
7.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
7.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
7.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
6.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
6.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
6.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
6.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
6.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
6.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
6.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
6.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
6.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
5.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
5.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
5.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
5.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
5.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
5.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
4.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
4.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
4.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
4.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
4.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
4.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
4.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
4.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
3.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
3.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
3.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
3.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
3.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
2.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
2.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
2.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
2.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
2.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
2.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
2.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
2.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
2.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
1.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
1.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
1.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
1.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
1.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
1.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
1.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1027
Tumor
1.7
513
Tumor
1.0
515
Tumor
1.0
422
Normal
0.9
114
Normal
0.9
113
Tumor
0.9
451
Tumor
0.8
915
Tumor
0.8
777
Tumor
0.8
123
Tumor
0.8
955
Tumor
0.8
111
Normal
0.7
615
Tumor
0.7
436
Normal
0.7
571
Tumor
0.7
465
Tumor
0.7
128
Normal
0.7
424
Normal
0.7
365
Tumor
0.6
357
Tumor
0.6
423
Tumor
0.6
232
Normal
0.6
627
Tumor
0.6
616
Normal
0.6
746
Normal
0.6
414
Normal
0.6
138
Normal
0.6
1022
Normal
0.5
741
Tumor
0.5
1045
Tumor
0.5
978
Normal
0.5
432
Normal
0.5
452
Normal
0.5
867
Tumor
0.5
685
Tumor
0.5
222
Normal
0.5
913
Tumor
0.5
464
Normal
0.5
126
Normal
0.5
914
Normal
0.5
883
Tumor
0.5
132
Normal
0.5
426
Normal
0.5
161
Tumor
0.5
272
Normal
0.5
956
Normal
0.4
366
Normal
0.4
171
Tumor
0.4
573
Tumor
0.4
1013
Tumor
0.4
136
Normal
0.4
618
Normal
0.4
142
Normal
0.4
742
Normal
0.4
518
Normal
0.4
456
Normal
0.4
648
Normal
0.4
172
Normal
0.4
258
Normal
0.4
416
Normal
0.4
262
Normal
0.4
162
Normal
0.4
428
Normal
0.4
1021
Tumor
0.4
925
Tumor
0.4
361
Tumor
0.4
196
Normal
0.4
698
Normal
0.3
314
Normal
0.3
1046
Normal
0.3
533
Tumor
0.3
214
Normal
0.3
278
Normal
0.3
863
Tumor
0.3
1014
Normal
0.3
358
Normal
0.3
461
Tumor
0.3
187
Tumor
0.3
574
Normal
0.3
112
Tumor
0.3
738
Normal
0.3
981
Tumor
0.3
466
Normal
0.3
213
Tumor
0.3
514
Normal
0.3
482
Normal
0.3
124
Normal
0.3
313
Tumor
0.3
628
Normal
0.3
327
Tumor
0.3
663
Tumor
0.3
487
Tumor
0.3
824
Normal
0.3
526
Normal
0.3
376
Normal
0.2
755
Tumor
0.2
858
Normal
0.2
727
Tumor
0.2
448
Normal
0.2
342
Normal
0.2
141
Tumor
0.2
728
Normal
0.2
873
Tumor
0.2
714
Normal
0.2
481
Tumor
0.2
434
Normal
0.2
462
Normal
0.2
944
Normal
0.2
375
Tumor
0.2
362
Normal
0.2
721
Tumor
0.2
534
Normal
0.2
368
Normal
0.2
923
Tumor
0.2
864
Normal
0.2
261
Tumor
0.2
127
Tumor
0.2
874
Normal
0.2
483
Tumor
0.2
525
Tumor
0.2
394
Normal
0.2
642
Normal
0.2
862
Normal
0.2
982
Normal
0.2
137
Tumor
0.2
723
Tumor
0.2
1016
Normal
0.2
865
Tumor
0.2
493
Tumor
0.2
882
Normal
0.2
664
Normal
0.2
298
Normal
0.2
188
Normal
0.2
866
Normal
0.1
353
Tumor
0.1
953
Tumor
0.1
1042
Normal
0.1
474
Normal
0.1
966
Normal
0.1
852
Normal
0.1
786
Normal
0.1
716
Normal
0.1
472
Normal
0.1
1028
Normal
0.1
984
Normal
0.1
823
Tumor
0.1
186
Normal
0.1
484
Normal
0.1
145
Tumor
0.1
1032
Normal
0.1
125
Tumor
0.1
818
Normal
0.1
816
Normal
0.1
435
Tumor
0.1
868
Normal
0.1
918
Normal
0.1
383
Tumor
0.1
926
Normal
0.1
516
Normal
0.1
446
Normal
0.1
386
Normal
0.1
563
Tumor
0.1
192
Normal
0.1
341
Tumor
0.1
268
Normal
0.0
546
Normal
0.0
443
Tumor
0.0
554
Normal
0.0
421
Tumor
0.0
1026
Normal
0.0
557
Tumor
0.0
468
Normal
0.0
477
Tumor
0.0
922
Normal
0.0
666
Normal
0.0
185
Tumor
0.0
857
Tumor
0.0
884
Normal
0.0
745
Tumor
0.0
756
Normal
0.0
1015
Tumor
0.0
878
Normal
0.0
568
Normal
0.0
332
Normal
0.0
938
Normal
0.0
218
Normal
0.0
412
Normal
0.0
722
Normal
0.0
328
Normal
0.0
916
Normal
0.0
354
Normal
0.0
952
Normal
0.0
388
Normal
0.0
954
Normal
-0.1
1044
Normal
-0.1
384
Normal
-0.1
964
Normal
-0.1
744
Normal
-0.1
191
Tumor
-0.1
433
Tumor
-0.1
286
Normal
-0.1
356
Normal
-0.1
396
Normal
-0.1
312
Normal
-0.1
527
Tumor
-0.1
352
Normal
-0.1
686
Normal
-0.1
564
Normal
-0.1
267
Tumor
-0.1
364
Normal
-0.1
228
Normal
-0.1
912
Normal
-0.2
636
Normal
-0.2
231
Tumor
-0.2
662
Normal
-0.2
778
Normal
-0.2
217
Tumor
-0.2
528
Normal
-0.2
257
Tumor
-0.2
968
Normal
-0.2
572
Normal
-0.2
212
Normal
-0.2
785
Tumor
-0.2
223
Tumor
-0.2
284
Normal
-0.2
911
Tumor
-0.2
494
Normal
-0.2
724
Normal
-0.2
444
Normal
-0.2
367
Tumor
-0.2
135
Tumor
-0.2
737
Tumor
-0.2
943
Tumor
-0.3
425
Tumor
-0.3
924
Normal
-0.3
445
Tumor
-0.3
195
Tumor
-0.3
951
Tumor
-0.3
536
Normal
-0.3
427
Tumor
-0.3
431
Tumor
-0.3
976
Normal
-0.3
641
Tumor
-0.3
696
Normal
-0.3
558
Normal
-0.3
538
Normal
-0.3
393
Tumor
-0.4
147
Tumor
-0.4
1041
Tumor
-0.4
392
Normal
-0.4
344
Normal
-0.4
937
Tumor
-0.4
977
Tumor
-0.4
415
Tumor
-0.4
387
Tumor
-0.4
491
Tumor
-0.4
224
Normal
-0.4
814
Normal
-0.4
471
Tumor
-0.4
958
Normal
-0.4
498
Normal
-0.4
713
Tumor
-0.4
917
Tumor
-0.5
277
Tumor
-0.5
395
Tumor
-0.5
283
Tumor
-0.5
148
Normal
-0.5
488
Normal
-0.5
813
Tumor
-0.5
523
Tumor
-0.5
672
Normal
-0.5
391
Tumor
-0.5
297
Tumor
-0.5
697
Tumor
-0.5
221
Tumor
-0.5
695
Tumor
-0.6
478
Normal
-0.6
211
Tumor
-0.6
545
Tumor
-0.6
455
Tumor
-0.6
492
Normal
-0.6
1043
Tumor
-0.6
963
Tumor
-0.6
567
Tumor
-0.7
635
Tumor
-0.7
467
Tumor
-0.7
343
Tumor
-0.7
881
Tumor
-0.7
1031
Tumor
-0.7
524
Normal
-0.7
877
Tumor
-0.7
967
Tumor
-0.7
311
Tumor
-0.7
271
Tumor
-0.7
861
Tumor
-0.8
617
Tumor
-0.8
473
Tumor
-0.9
413
Tumor
-0.9
965
Tumor
-0.9
537
Tumor
-0.9
553
Tumor
-0.9
517
Tumor
-0.9
227
Tumor
-0.9
647
Tumor
-0.9
411
Tumor
-0.9
355
Tumor
-1.0
463
Tumor
-1.0
535
Tumor
-1.0
743
Tumor
-1.0
447
Tumor
-1.0
715
Tumor
-1.0
363
Tumor
-1.1
331
Tumor
-1.1
671
Tumor
-1.1
497
Tumor
-1.1
957
Tumor
-1.2
921
Tumor
-1.2
1025
Tumor
-1.2
975
Tumor
-1.2
385
Tumor
-1.3
983
Tumor
-1.3
665
Tumor
-1.3
851
Tumor
-1.3
817
Tumor
-1.4
285
Tumor
-1.4
661
Tumor
-1.5
351
Tumor
-1.7
146
Normal
-1.8
815
Tumor
-1.9
131
Tumor
-4.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
