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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
BHMT2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
137.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
411.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
392.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
376.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
359.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
359.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
351.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
349.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
348.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
347.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
327.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
319.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
315.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
315.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
312.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
310.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
309.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
302.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
295.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
295.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
292.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
283.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
282.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
282.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
282.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
280.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
279.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
279.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
277.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
277.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
277.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
277.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
273.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
273.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
267.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
265.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
261.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
259.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
254.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
253.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
252.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
251.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
251.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
250.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
249.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
248.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
247.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
238.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
235.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
235.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
233.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
232.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
232.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
230.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
230.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
229.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
228.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
224.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
223.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
223.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
222.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
222.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
220.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
218.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
218.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
218.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
218.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
217.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
216.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
216.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
216.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
215.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
211.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
209.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
209.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
208.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
204.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
204.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
203.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
202.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
201.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
201.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
201.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
201.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
200.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
199.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
199.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
196.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
195.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
195.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
194.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
194.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
193.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
192.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
192.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
191.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
191.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
190.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
188.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
186.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
185.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
185.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
185.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
184.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
184.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
183.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
182.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
181.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
180.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
180.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
179.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
179.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
179.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
178.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
178.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
178.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
177.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
175.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
171.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
170.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
168.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
167.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
167.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
167.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
166.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
165.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
165.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
164.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
163.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
163.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
161.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
160.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
160.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
159.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
159.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
158.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
157.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
156.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
156.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
153.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
153.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
152.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
152.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
151.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
150.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
150.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
150.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
148.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
148.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
147.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
147.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
147.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
147.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
146.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
143.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
143.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
142.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
141.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
140.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
139.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
138.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
137.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
136.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
136.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
136.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
135.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
134.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
133.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
133.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
132.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
132.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
131.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
131.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
129.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
128.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
128.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
127.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
126.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
125.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
124.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
122.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
120.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
120.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
120.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
120.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
119.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
119.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
118.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
118.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
118.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
116.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
115.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
115.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
114.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
114.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
113.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
113.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
113.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
111.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
110.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
110.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
110.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
109.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
109.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
109.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
108.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
107.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
106.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
106.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
106.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
106.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
106.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
104.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
103.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
102.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
102.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
102.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
102.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
102.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
102.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
100.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
99.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
99.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
99.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
98.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
97.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
95.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
95.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
94.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
94.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
94.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
94.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
93.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
93.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
91.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
90.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
90.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
90.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
89.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
89.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
89.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
87.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
87.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
86.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
86.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
86.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
86.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
85.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
85.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
84.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
84.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
84.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
83.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
83.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
81.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
81.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
81.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
80.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
79.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
78.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
77.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
77.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
76.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
76.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
76.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
75.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
74.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
73.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
73.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
72.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
72.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
72.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
72.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
71.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
70.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
70.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
70.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
68.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
68.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
67.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
67.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
67.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
65.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
64.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
64.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
63.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
63.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
62.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
62.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
62.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
61.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
61.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
59.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
58.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
58.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
58.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
57.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
57.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
55.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
55.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
53.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
53.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
53.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
52.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
51.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
51.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
50.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
49.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
47.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
47.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
47.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
47.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
46.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
46.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
45.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
44.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
43.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
42.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
40.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
40.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
40.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
37.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
36.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
36.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
35.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
35.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
34.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
33.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
31.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
30.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
30.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
28.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
27.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
26.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
26.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
25.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
24.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
24.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
24.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
24.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
24.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
23.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
21.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
20.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
19.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
19.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
18.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
10.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
5.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
1.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
BHMT2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
164.6
Number of samples
231
Samples
Sample
Description
TPM
DO45163
0 years, male, NA, stage:2, alive, 960 days
535.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
528.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
464.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
446.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
444.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
430.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
429.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
417.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
410.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
391.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
384.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
378.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
361.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
351.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
350.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
349.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
340.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
337.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
337.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
337.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
334.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
325.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
324.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
322.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
322.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
322.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
309.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
305.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
292.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
291.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
283.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
280.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
275.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
269.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
267.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
264.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
260.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
260.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
258.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
257.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
256.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
254.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
252.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
252.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
250.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
250.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
249.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
249.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
246.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
245.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
242.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
238.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
238.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
237.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
236.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
235.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
233.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
231.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
225.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
225.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
222.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
220.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
218.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
217.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
214.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
208.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
208.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
207.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
207.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
204.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
203.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
201.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
200.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
200.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
198.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
198.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
197.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
197.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
192.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
191.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
191.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
190.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
190.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
184.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
184.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
183.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
183.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
183.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
180.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
179.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
179.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
177.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
177.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
177.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
175.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
173.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
171.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
169.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
169.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
167.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
166.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
166.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
165.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
165.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
165.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
164.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
162.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
158.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
157.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
156.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
155.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
155.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
154.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
154.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
151.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
149.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
147.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
147.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
146.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
145.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
144.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
144.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
143.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
143.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
142.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
137.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
136.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
135.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
133.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
132.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
132.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
131.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
131.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
127.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
127.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
126.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
126.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
125.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
124.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
124.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
122.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
122.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
122.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
122.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
121.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
121.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
120.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
119.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
119.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
117.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
116.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
110.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
110.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
110.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
108.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
107.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
106.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
105.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
101.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
100.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
99.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
99.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
98.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
97.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
97.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
96.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
96.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
91.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
90.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
90.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
89.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
89.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
89.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
88.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
87.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
87.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
86.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
84.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
82.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
82.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
81.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
81.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
81.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
80.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
79.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
79.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
78.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
77.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
73.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
71.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
68.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
65.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
58.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
58.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
56.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
55.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
53.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
52.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
51.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
46.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
42.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
41.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
39.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
37.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
33.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
27.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
21.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
20.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
15.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
12.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
11.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
11.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
7.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
4.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
3.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
3.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
3.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
1.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
1.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
0.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
436
Normal
1.2
426
Normal
1.2
738
Normal
1.1
616
Normal
1.1
862
Normal
1.0
518
Normal
1.0
366
Normal
1.0
435
Tumor
1.0
698
Normal
1.0
756
Normal
1.0
648
Normal
1.0
924
Normal
1.0
128
Normal
1.0
571
Tumor
1.0
824
Normal
0.9
864
Normal
0.9
746
Normal
0.9
944
Normal
0.9
742
Normal
0.9
728
Normal
0.9
714
Normal
0.9
572
Normal
0.9
462
Normal
0.9
938
Normal
0.9
258
Normal
0.8
1022
Normal
0.8
564
Normal
0.8
222
Normal
0.8
546
Normal
0.8
618
Normal
0.8
914
Normal
0.8
452
Normal
0.8
172
Normal
0.8
196
Normal
0.8
424
Normal
0.8
448
Normal
0.8
554
Normal
0.8
926
Normal
0.8
298
Normal
0.8
132
Normal
0.8
358
Normal
0.8
272
Normal
0.8
722
Normal
0.8
818
Normal
0.8
482
Normal
0.8
866
Normal
0.8
162
Normal
0.7
662
Normal
0.7
1016
Normal
0.7
481
Tumor
0.7
484
Normal
0.7
278
Normal
0.7
111
Normal
0.7
666
Normal
0.7
314
Normal
0.7
464
Normal
0.7
516
Normal
0.7
456
Normal
0.7
956
Normal
0.7
964
Normal
0.7
412
Normal
0.7
628
Normal
0.7
428
Normal
0.7
882
Normal
0.7
878
Normal
0.7
982
Normal
0.7
664
Normal
0.7
1026
Normal
0.7
432
Normal
0.6
422
Normal
0.6
342
Normal
0.6
1032
Normal
0.6
362
Normal
0.6
466
Normal
0.6
474
Normal
0.6
534
Normal
0.6
356
Normal
0.6
1046
Normal
0.6
186
Normal
0.6
786
Normal
0.6
228
Normal
0.6
472
Normal
0.6
416
Normal
0.6
411
Tumor
0.6
966
Normal
0.6
958
Normal
0.6
262
Normal
0.6
558
Normal
0.6
312
Normal
0.6
212
Normal
0.6
376
Normal
0.6
494
Normal
0.6
568
Normal
0.6
922
Normal
0.6
446
Normal
0.5
136
Normal
0.5
636
Normal
0.5
414
Normal
0.5
884
Normal
0.5
868
Normal
0.5
214
Normal
0.5
952
Normal
0.5
394
Normal
0.5
816
Normal
0.5
386
Normal
0.5
858
Normal
0.5
1042
Normal
0.5
146
Normal
0.5
148
Normal
0.5
332
Normal
0.5
912
Normal
0.5
465
Tumor
0.5
526
Normal
0.5
976
Normal
0.5
716
Normal
0.5
874
Normal
0.5
423
Tumor
0.4
114
Normal
0.4
388
Normal
0.4
232
Normal
0.4
642
Normal
0.4
142
Normal
0.4
852
Normal
0.4
328
Normal
0.4
396
Normal
0.4
723
Tumor
0.4
514
Normal
0.4
1044
Normal
0.4
696
Normal
0.4
286
Normal
0.4
955
Tumor
0.3
434
Normal
0.3
744
Normal
0.3
968
Normal
0.3
138
Normal
0.3
918
Normal
0.3
126
Normal
0.3
488
Normal
0.3
468
Normal
0.3
188
Normal
0.3
357
Tumor
0.3
354
Normal
0.3
393
Tumor
0.2
978
Normal
0.2
1028
Normal
0.2
1014
Normal
0.2
778
Normal
0.2
574
Normal
0.2
344
Normal
0.2
615
Tumor
0.2
284
Normal
0.2
984
Normal
0.2
528
Normal
0.2
915
Tumor
0.2
686
Normal
0.1
1027
Tumor
0.1
364
Normal
0.1
218
Normal
0.1
916
Normal
0.1
268
Normal
0.1
873
Tumor
0.1
124
Normal
0.0
392
Normal
0.0
981
Tumor
0.0
954
Normal
0.0
755
Tumor
0.0
352
Normal
0.0
431
Tumor
0.0
127
Tumor
0.0
368
Normal
0.0
867
Tumor
-0.1
365
Tumor
-0.1
911
Tumor
-0.1
415
Tumor
-0.1
715
Tumor
-0.1
672
Normal
-0.1
1045
Tumor
-0.1
538
Normal
-0.1
513
Tumor
-0.2
161
Tumor
-0.2
384
Normal
-0.2
353
Tumor
-0.2
1013
Tumor
-0.3
695
Tumor
-0.3
224
Normal
-0.3
741
Tumor
-0.3
192
Normal
-0.3
112
Tumor
-0.3
477
Tumor
-0.3
478
Normal
-0.3
444
Normal
-0.4
492
Normal
-0.4
487
Tumor
-0.4
261
Tumor
-0.4
617
Tumor
-0.4
327
Tumor
-0.4
113
Tumor
-0.5
433
Tumor
-0.6
217
Tumor
-0.6
727
Tumor
-0.6
145
Tumor
-0.6
861
Tumor
-0.6
267
Tumor
-0.6
451
Tumor
-0.6
627
Tumor
-0.6
227
Tumor
-0.6
745
Tumor
-0.6
185
Tumor
-0.6
857
Tumor
-0.7
923
Tumor
-0.7
391
Tumor
-0.7
461
Tumor
-0.7
195
Tumor
-0.7
498
Normal
-0.7
141
Tumor
-0.7
313
Tumor
-0.8
536
Normal
-0.8
171
Tumor
-0.8
1041
Tumor
-0.8
953
Tumor
-0.8
721
Tumor
-0.8
361
Tumor
-0.8
851
Tumor
-0.8
665
Tumor
-0.8
524
Normal
-0.8
883
Tumor
-0.8
421
Tumor
-0.8
863
Tumor
-0.8
187
Tumor
-0.8
341
Tumor
-0.8
257
Tumor
-0.9
483
Tumor
-0.9
515
Tumor
-0.9
123
Tumor
-0.9
533
Tumor
-1.0
563
Tumor
-1.0
517
Tumor
-1.0
785
Tumor
-1.0
823
Tumor
-1.0
977
Tumor
-1.0
965
Tumor
-1.0
1031
Tumor
-1.0
221
Tumor
-1.0
427
Tumor
-1.0
191
Tumor
-1.0
537
Tumor
-1.0
647
Tumor
-1.0
137
Tumor
-1.1
473
Tumor
-1.1
567
Tumor
-1.1
685
Tumor
-1.1
663
Tumor
-1.1
447
Tumor
-1.1
525
Tumor
-1.2
213
Tumor
-1.2
963
Tumor
-1.2
913
Tumor
-1.2
943
Tumor
-1.3
355
Tumor
-1.3
147
Tumor
-1.3
737
Tumor
-1.3
493
Tumor
-1.3
917
Tumor
-1.3
881
Tumor
-1.3
131
Tumor
-1.3
553
Tumor
-1.3
557
Tumor
-1.4
277
Tumor
-1.4
445
Tumor
-1.4
463
Tumor
-1.4
387
Tumor
-1.4
231
Tumor
-1.4
975
Tumor
-1.5
491
Tumor
-1.5
1043
Tumor
-1.5
777
Tumor
-1.5
877
Tumor
-1.5
271
Tumor
-1.5
297
Tumor
-1.5
641
Tumor
-1.5
713
Tumor
-1.6
1025
Tumor
-1.6
467
Tumor
-1.6
814
Normal
-1.6
957
Tumor
-1.6
865
Tumor
-1.6
1015
Tumor
-1.6
443
Tumor
-1.6
383
Tumor
-1.6
921
Tumor
-1.6
425
Tumor
-1.6
937
Tumor
-1.7
363
Tumor
-1.7
661
Tumor
-1.7
343
Tumor
-1.7
925
Tumor
-1.7
125
Tumor
-1.8
375
Tumor
-1.8
471
Tumor
-1.8
413
Tumor
-1.9
573
Tumor
-1.9
1021
Tumor
-1.9
455
Tumor
-1.9
311
Tumor
-1.9
815
Tumor
-1.9
331
Tumor
-1.9
813
Tumor
-1.9
497
Tumor
-1.9
724
Normal
-2.0
367
Tumor
-2.0
223
Tumor
-2.0
983
Tumor
-2.0
135
Tumor
-2.1
697
Tumor
-2.1
743
Tumor
-2.1
395
Tumor
-2.1
967
Tumor
-2.1
817
Tumor
-2.2
527
Tumor
-2.2
351
Tumor
-2.2
951
Tumor
-2.2
285
Tumor
-2.2
523
Tumor
-2.3
635
Tumor
-2.3
535
Tumor
-2.3
545
Tumor
-2.4
671
Tumor
-2.4
211
Tumor
-2.4
283
Tumor
-2.5
385
Tumor
-2.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.