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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DMGDH is validated prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
28.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
155.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
144.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
126.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
118.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
116.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
114.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
111.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
104.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
95.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
94.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
93.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
92.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
90.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
89.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
88.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
84.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
82.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
81.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
81.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
80.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
77.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
77.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
76.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
75.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
75.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
74.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
71.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
71.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
71.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
70.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
69.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
68.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
67.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
67.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
67.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
65.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
64.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
62.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
61.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
60.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
58.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
57.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
57.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
57.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
55.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
55.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
55.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
54.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
54.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
54.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
53.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
53.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
53.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
52.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
52.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
51.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
51.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
50.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
49.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
49.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
49.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
48.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
48.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
48.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
48.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
48.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
47.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
47.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
46.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
46.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
45.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
44.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
44.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
43.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
43.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
42.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
42.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
42.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
42.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
41.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
41.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
41.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
41.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
41.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
40.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
40.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
40.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
39.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
39.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
39.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
38.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
38.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
38.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
38.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
38.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
37.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
37.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
37.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
37.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
37.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
36.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
36.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
36.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
36.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
36.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
36.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
36.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
35.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
35.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
35.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
34.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
34.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
34.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
33.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
33.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
33.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
33.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
32.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
32.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
31.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
31.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
31.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
31.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
31.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
31.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
30.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
30.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
29.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
29.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
29.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
29.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
29.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
29.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
29.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
29.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
28.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
28.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
28.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
28.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
28.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
28.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
27.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
27.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
26.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
26.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
26.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
26.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
26.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
26.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
26.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
26.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
25.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
25.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
25.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
25.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
25.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
25.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
24.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
24.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
24.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
24.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
24.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
23.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
23.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
23.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
23.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
22.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
22.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
22.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
21.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
21.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
21.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
20.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
20.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
20.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
20.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
20.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
20.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
20.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
20.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
20.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
20.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
20.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
19.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
19.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
19.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
19.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
19.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
19.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
19.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
19.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
19.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
18.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
18.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
18.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
18.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
18.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
18.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
18.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
17.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
17.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
17.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
17.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
17.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
17.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
17.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
17.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
16.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
16.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
16.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
16.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
16.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
16.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
15.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
15.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
15.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
15.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
15.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
15.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
15.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
15.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
15.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
14.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
14.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
14.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
14.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
14.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
14.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
14.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
14.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
14.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
14.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
14.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
14.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
13.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
13.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
13.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
13.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
13.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
12.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
12.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
12.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
12.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
12.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
12.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
12.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
12.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
11.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
11.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
11.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
11.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
11.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
11.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
10.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
10.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
10.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
10.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
10.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
10.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
10.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
10.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
10.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
9.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
9.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
9.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
9.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
9.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
9.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
9.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
9.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
8.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
8.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
8.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
7.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
7.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
6.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
6.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
6.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
6.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
5.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
5.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
5.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
5.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
5.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
5.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
5.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
4.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
4.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
4.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
3.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
2.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
2.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
2.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
2.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
1.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DMGDH is validated prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
29.6
Number of samples
231
Samples
Sample
Description
TPM
DO45111
0 years, male, NA, stage:2, alive, 1590 days
163.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
154.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
139.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
111.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
108.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
108.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
106.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
104.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
104.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
97.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
95.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
93.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
89.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
85.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
84.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
83.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
78.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
77.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
73.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
73.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
71.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
70.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
69.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
69.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
67.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
67.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
63.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
62.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
60.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
60.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
59.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
59.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
59.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
57.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
56.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
56.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
54.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
51.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
51.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
49.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
47.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
47.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
47.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
47.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
47.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
46.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
45.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
45.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
45.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
43.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
43.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
42.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
41.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
41.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
41.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
40.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
40.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
40.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
40.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
40.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
39.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
39.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
38.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
38.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
38.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
38.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
38.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
37.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
37.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
37.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
36.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
36.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
35.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
35.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
35.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
34.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
34.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
33.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
33.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
33.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
31.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
31.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
30.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
29.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
29.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
29.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
28.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
28.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
28.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
28.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
27.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
27.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
27.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
26.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
26.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
26.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
26.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
25.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
25.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
25.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
25.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
25.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
24.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
24.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
23.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
23.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
23.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
22.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
22.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
22.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
22.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
22.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
21.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
21.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
21.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
20.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
20.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
20.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
20.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
20.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
20.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
19.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
19.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
19.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
18.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
18.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
18.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
18.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
18.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
18.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
18.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
17.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
17.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
17.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
17.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
16.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
16.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
15.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
15.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
15.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
15.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
15.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
15.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
15.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
15.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
14.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
14.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
14.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
13.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
13.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
13.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
12.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
12.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
12.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
11.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
11.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
11.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
11.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
11.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
11.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
11.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
10.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
8.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
8.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
8.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
7.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
7.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
7.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
7.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
7.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
6.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
6.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
6.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
6.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
6.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
5.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
5.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
5.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
4.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
4.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
4.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
3.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
3.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
3.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
3.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
3.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
2.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
2.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
2.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
2.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
2.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
2.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
1.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
1.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
0.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
627
Tumor
1.5
452
Normal
1.2
128
Normal
1.1
818
Normal
1.1
742
Normal
1.1
744
Normal
1.1
648
Normal
1.0
564
Normal
1.0
862
Normal
1.0
436
Normal
1.0
824
Normal
1.0
723
Tumor
1.0
636
Normal
1.0
462
Normal
1.0
426
Normal
1.0
354
Normal
1.0
366
Normal
1.0
414
Normal
1.0
756
Normal
0.9
698
Normal
0.9
298
Normal
0.9
912
Normal
0.9
342
Normal
0.9
746
Normal
0.9
388
Normal
0.9
1032
Normal
0.9
186
Normal
0.9
618
Normal
0.9
882
Normal
0.9
964
Normal
0.9
423
Tumor
0.9
488
Normal
0.9
616
Normal
0.9
944
Normal
0.9
356
Normal
0.9
534
Normal
0.9
714
Normal
0.8
196
Normal
0.8
738
Normal
0.8
786
Normal
0.8
1022
Normal
0.8
424
Normal
0.8
878
Normal
0.8
924
Normal
0.8
232
Normal
0.8
472
Normal
0.8
938
Normal
0.8
358
Normal
0.8
664
Normal
0.8
513
Tumor
0.8
858
Normal
0.8
314
Normal
0.8
376
Normal
0.7
1016
Normal
0.7
1044
Normal
0.7
162
Normal
0.7
914
Normal
0.7
448
Normal
0.7
214
Normal
0.7
148
Normal
0.7
484
Normal
0.7
146
Normal
0.7
922
Normal
0.7
278
Normal
0.7
465
Tumor
0.7
228
Normal
0.7
722
Normal
0.7
482
Normal
0.7
666
Normal
0.7
716
Normal
0.7
111
Normal
0.7
926
Normal
0.7
446
Normal
0.7
1014
Normal
0.7
352
Normal
0.7
132
Normal
0.7
258
Normal
0.6
1026
Normal
0.6
568
Normal
0.6
114
Normal
0.6
142
Normal
0.6
428
Normal
0.6
958
Normal
0.6
864
Normal
0.6
172
Normal
0.6
332
Normal
0.6
546
Normal
0.6
982
Normal
0.6
1046
Normal
0.6
642
Normal
0.6
686
Normal
0.6
127
Tumor
0.6
954
Normal
0.6
911
Tumor
0.5
866
Normal
0.5
494
Normal
0.5
615
Tumor
0.5
464
Normal
0.5
728
Normal
0.5
696
Normal
0.5
344
Normal
0.5
394
Normal
0.5
518
Normal
0.5
672
Normal
0.5
432
Normal
0.5
468
Normal
0.5
412
Normal
0.5
364
Normal
0.5
572
Normal
0.5
538
Normal
0.4
884
Normal
0.4
1045
Tumor
0.4
868
Normal
0.4
966
Normal
0.4
456
Normal
0.4
514
Normal
0.4
466
Normal
0.4
218
Normal
0.4
1042
Normal
0.4
284
Normal
0.4
1041
Tumor
0.4
138
Normal
0.4
145
Tumor
0.4
362
Normal
0.4
396
Normal
0.4
874
Normal
0.3
978
Normal
0.3
392
Normal
0.3
628
Normal
0.3
984
Normal
0.3
474
Normal
0.3
528
Normal
0.3
422
Normal
0.3
434
Normal
0.3
574
Normal
0.3
224
Normal
0.3
222
Normal
0.3
918
Normal
0.3
328
Normal
0.3
956
Normal
0.3
816
Normal
0.3
286
Normal
0.3
554
Normal
0.3
852
Normal
0.2
365
Tumor
0.2
662
Normal
0.2
526
Normal
0.2
976
Normal
0.2
312
Normal
0.2
444
Normal
0.2
212
Normal
0.2
925
Tumor
0.2
857
Tumor
0.2
136
Normal
0.2
558
Normal
0.2
478
Normal
0.2
968
Normal
0.1
262
Normal
0.1
778
Normal
0.1
571
Tumor
0.1
952
Normal
0.1
916
Normal
0.1
416
Normal
0.1
386
Normal
0.1
267
Tumor
0.1
188
Normal
0.1
741
Tumor
0.1
867
Tumor
0.1
516
Normal
0.0
384
Normal
0.0
361
Tumor
0.0
368
Normal
0.0
981
Tumor
0.0
261
Tumor
0.0
268
Normal
0.0
353
Tumor
0.0
492
Normal
0.0
451
Tumor
-0.1
873
Tumor
-0.1
192
Normal
-0.1
955
Tumor
-0.1
563
Tumor
-0.1
715
Tumor
-0.1
685
Tumor
-0.2
126
Normal
-0.2
461
Tumor
-0.2
435
Tumor
-0.2
498
Normal
-0.2
433
Tumor
-0.2
1043
Tumor
-0.2
227
Tumor
-0.3
481
Tumor
-0.3
191
Tumor
-0.3
411
Tumor
-0.3
124
Normal
-0.4
217
Tumor
-0.4
1028
Normal
-0.4
515
Tumor
-0.4
524
Normal
-0.4
272
Normal
-0.4
113
Tumor
-0.5
137
Tumor
-0.5
557
Tumor
-0.5
195
Tumor
-0.5
477
Tumor
-0.5
112
Tumor
-0.5
483
Tumor
-0.5
913
Tumor
-0.5
231
Tumor
-0.5
861
Tumor
-0.6
785
Tumor
-0.6
937
Tumor
-0.6
536
Normal
-0.6
915
Tumor
-0.6
341
Tumor
-0.6
443
Tumor
-0.6
617
Tumor
-0.6
823
Tumor
-0.6
977
Tumor
-0.6
185
Tumor
-0.6
745
Tumor
-0.7
327
Tumor
-0.7
1025
Tumor
-0.7
665
Tumor
-0.7
415
Tumor
-0.8
943
Tumor
-0.8
187
Tumor
-0.8
863
Tumor
-0.8
171
Tumor
-0.8
363
Tumor
-0.8
223
Tumor
-0.8
473
Tumor
-0.8
721
Tumor
-0.9
641
Tumor
-0.9
923
Tumor
-0.9
493
Tumor
-0.9
695
Tumor
-0.9
755
Tumor
-1.0
447
Tumor
-1.0
123
Tumor
-1.0
517
Tumor
-1.0
1013
Tumor
-1.0
431
Tumor
-1.0
491
Tumor
-1.0
277
Tumor
-1.1
881
Tumor
-1.1
553
Tumor
-1.1
777
Tumor
-1.1
297
Tumor
-1.1
161
Tumor
-1.1
421
Tumor
-1.1
963
Tumor
-1.2
427
Tumor
-1.2
471
Tumor
-1.2
883
Tumor
-1.2
141
Tumor
-1.2
814
Normal
-1.2
1015
Tumor
-1.2
213
Tumor
-1.2
1031
Tumor
-1.3
917
Tumor
-1.3
487
Tumor
-1.3
953
Tumor
-1.3
383
Tumor
-1.3
221
Tumor
-1.4
635
Tumor
-1.4
467
Tumor
-1.4
713
Tumor
-1.4
357
Tumor
-1.4
135
Tumor
-1.4
393
Tumor
-1.4
737
Tumor
-1.4
877
Tumor
-1.5
445
Tumor
-1.5
355
Tumor
-1.5
975
Tumor
-1.5
425
Tumor
-1.6
413
Tumor
-1.6
387
Tumor
-1.6
497
Tumor
-1.6
463
Tumor
-1.6
343
Tumor
-1.7
313
Tumor
-1.7
527
Tumor
-1.7
391
Tumor
-1.7
743
Tumor
-1.7
131
Tumor
-1.7
351
Tumor
-1.7
727
Tumor
-1.7
455
Tumor
-1.8
663
Tumor
-1.8
851
Tumor
-1.8
533
Tumor
-1.8
921
Tumor
-1.8
567
Tumor
-1.8
147
Tumor
-1.8
813
Tumor
-1.8
573
Tumor
-1.8
865
Tumor
-1.9
125
Tumor
-1.9
257
Tumor
-1.9
647
Tumor
-1.9
724
Normal
-1.9
697
Tumor
-1.9
525
Tumor
-1.9
271
Tumor
-1.9
671
Tumor
-1.9
537
Tumor
-1.9
395
Tumor
-2.0
983
Tumor
-2.0
1021
Tumor
-2.0
1027
Tumor
-2.0
331
Tumor
-2.0
815
Tumor
-2.0
951
Tumor
-2.0
311
Tumor
-2.0
967
Tumor
-2.1
817
Tumor
-2.1
375
Tumor
-2.1
367
Tumor
-2.1
535
Tumor
-2.2
545
Tumor
-2.2
523
Tumor
-2.3
965
Tumor
-2.3
385
Tumor
-2.3
957
Tumor
-2.4
285
Tumor
-2.4
211
Tumor
-2.4
661
Tumor
-2.4
283
Tumor
-2.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
