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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SERINC3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
36.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
102.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
88.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
88.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
88.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
84.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
80.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
80.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
77.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
73.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
73.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
72.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
71.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
68.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
68.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
67.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
66.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
65.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
64.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
64.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
63.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
63.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
63.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
62.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
62.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
61.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
61.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
58.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
58.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
57.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
57.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
57.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
57.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
57.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
57.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
56.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
56.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
56.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
56.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
55.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
54.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
54.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
54.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
54.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
54.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
54.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
53.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
53.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
53.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
53.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
53.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
53.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
53.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
53.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
52.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
52.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
52.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
52.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
51.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
51.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
51.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
51.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
51.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
51.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
50.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
50.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
50.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
49.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
49.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
49.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
48.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
48.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
48.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
48.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
48.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
48.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
47.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
47.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
47.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
47.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
47.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
47.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
47.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
47.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
47.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
46.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
46.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
46.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
45.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
45.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
45.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
45.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
45.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
45.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
44.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
44.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
44.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
44.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
44.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
44.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
44.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
44.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
44.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
43.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
43.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
43.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
43.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
43.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
43.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
43.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
42.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
42.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
42.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
42.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
42.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
41.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
41.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
41.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
41.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
41.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
41.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
41.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
40.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
40.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
40.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
40.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
40.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
40.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
39.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
39.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
39.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
39.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
39.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
39.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
39.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
39.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
38.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
38.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
37.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
37.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
37.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
37.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
37.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
37.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
37.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
37.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
37.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
37.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
37.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
37.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
37.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
36.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
36.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
36.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
36.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
36.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
36.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
35.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
35.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
35.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
35.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
35.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
35.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
35.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
35.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
35.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
35.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
35.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
35.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
34.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
34.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
34.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
34.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
34.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
34.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
34.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
34.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
34.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
34.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
33.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
33.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
33.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
33.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
33.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
33.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
33.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
33.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
33.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
33.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
32.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
32.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
32.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
32.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
32.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
32.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
32.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
32.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
32.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
32.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
32.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
31.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
31.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
31.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
31.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
31.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
31.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
31.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
31.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
31.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
31.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
31.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
30.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
30.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
30.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
30.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
30.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
30.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
30.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
30.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
29.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
29.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
29.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
29.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
29.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
29.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
29.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
29.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
29.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
29.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
29.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
29.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
28.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
28.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
28.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
28.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
28.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
28.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
28.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
28.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
28.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
28.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
28.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
28.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
28.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
27.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
27.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
27.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
27.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
27.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
27.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
27.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
26.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
26.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
26.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
26.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
26.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
26.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
26.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
26.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
25.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
25.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
25.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
25.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
25.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
25.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
25.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
25.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
25.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
25.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
24.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
24.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
24.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
24.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
24.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
24.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
24.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
24.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
24.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
24.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
24.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
24.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
24.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
24.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
23.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
23.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
23.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
23.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
23.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
23.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
23.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
22.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
22.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
22.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
22.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
22.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
22.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
21.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
21.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
21.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
21.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
21.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
21.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
21.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
21.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
21.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
20.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
20.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
20.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
20.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
20.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
20.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
20.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
20.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
19.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
19.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
19.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
19.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
19.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
19.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
19.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
19.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
18.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
18.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
18.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
18.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
18.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
18.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
18.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
17.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
17.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
17.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
17.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
17.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
17.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
17.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
16.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
16.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
16.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
15.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
15.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
15.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
15.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
15.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
15.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
15.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
15.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
15.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
14.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
14.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
14.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
14.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
14.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
13.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
13.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
13.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
12.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
11.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
11.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
11.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
11.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
10.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
9.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SERINC3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
36.5
Number of samples
231
Samples
Sample
Description
TPM
DO45117
0 years, female, NA, stage:2, dead, 1110 days
172.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
136.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
100.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
94.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
90.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
86.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
84.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
84.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
69.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
69.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
65.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
64.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
63.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
62.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
62.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
61.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
60.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
59.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
59.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
57.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
56.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
56.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
55.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
54.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
54.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
54.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
53.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
52.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
52.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
52.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
51.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
51.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
49.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
49.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
48.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
48.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
47.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
47.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
46.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
46.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
46.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
46.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
46.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
46.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
45.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
45.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
45.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
44.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
44.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
44.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
43.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
43.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
43.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
42.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
42.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
42.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
42.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
42.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
42.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
42.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
41.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
41.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
41.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
41.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
40.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
40.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
40.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
40.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
40.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
39.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
39.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
39.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
39.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
39.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
38.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
38.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
38.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
38.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
38.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
38.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
38.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
38.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
38.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
37.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
37.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
37.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
37.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
37.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
37.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
37.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
37.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
37.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
36.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
36.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
36.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
36.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
36.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
36.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
35.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
35.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
35.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
35.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
35.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
35.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
35.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
35.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
35.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
35.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
35.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
35.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
35.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
35.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
34.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
34.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
34.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
34.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
34.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
34.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
33.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
33.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
33.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
33.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
33.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
33.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
33.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
33.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
32.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
32.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
32.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
32.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
32.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
32.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
32.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
32.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
32.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
32.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
32.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
32.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
32.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
31.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
31.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
31.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
31.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
31.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
31.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
30.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
30.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
30.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
30.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
29.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
29.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
29.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
28.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
28.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
28.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
28.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
28.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
28.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
27.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
27.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
27.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
27.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
27.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
27.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
27.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
26.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
26.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
26.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
26.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
26.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
26.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
25.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
25.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
25.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
24.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
24.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
24.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
24.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
24.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
24.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
24.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
23.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
23.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
23.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
22.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
22.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
22.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
22.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
21.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
21.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
21.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
21.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
21.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
21.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
20.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
20.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
20.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
19.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
19.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
19.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
19.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
19.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
18.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
18.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
18.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
18.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
18.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
17.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
17.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
17.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
16.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
16.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
16.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
16.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
16.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
16.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
15.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
15.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
14.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
14.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
14.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
14.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
13.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
13.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
13.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
13.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
12.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
12.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
11.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
11.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
10.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
343
Tumor
1.2
573
Tumor
1.2
533
Tumor
1.1
425
Tumor
1.1
435
Tumor
1.0
483
Tumor
0.9
445
Tumor
0.9
981
Tumor
0.8
331
Tumor
0.7
385
Tumor
0.7
277
Tumor
0.7
525
Tumor
0.7
491
Tumor
0.7
545
Tumor
0.7
471
Tumor
0.7
283
Tumor
0.6
413
Tumor
0.6
455
Tumor
0.6
671
Tumor
0.6
493
Tumor
0.6
171
Tumor
0.6
567
Tumor
0.5
351
Tumor
0.5
1013
Tumor
0.5
497
Tumor
0.5
863
Tumor
0.5
211
Tumor
0.5
257
Tumor
0.5
517
Tumor
0.5
943
Tumor
0.5
411
Tumor
0.5
473
Tumor
0.4
355
Tumor
0.4
523
Tumor
0.4
817
Tumor
0.4
917
Tumor
0.4
965
Tumor
0.4
357
Tumor
0.4
297
Tumor
0.4
433
Tumor
0.4
951
Tumor
0.4
311
Tumor
0.4
137
Tumor
0.4
147
Tumor
0.4
823
Tumor
0.4
553
Tumor
0.3
145
Tumor
0.3
527
Tumor
0.3
223
Tumor
0.3
221
Tumor
0.3
963
Tumor
0.3
135
Tumor
0.3
715
Tumor
0.3
431
Tumor
0.3
877
Tumor
0.3
421
Tumor
0.3
785
Tumor
0.3
213
Tumor
0.3
745
Tumor
0.3
537
Tumor
0.3
571
Tumor
0.3
697
Tumor
0.2
363
Tumor
0.2
415
Tumor
0.2
535
Tumor
0.2
387
Tumor
0.2
925
Tumor
0.2
161
Tumor
0.2
1025
Tumor
0.2
983
Tumor
0.2
647
Tumor
0.2
672
Normal
0.2
977
Tumor
0.2
538
Normal
0.2
477
Tumor
0.2
187
Tumor
0.2
123
Tumor
0.2
665
Tumor
0.2
427
Tumor
0.1
261
Tumor
0.1
563
Tumor
0.1
191
Tumor
0.1
444
Normal
0.1
393
Tumor
0.1
227
Tumor
0.1
443
Tumor
0.1
492
Normal
0.1
957
Tumor
0.1
271
Tumor
0.1
498
Normal
0.1
478
Normal
0.1
185
Tumor
0.1
883
Tumor
0.1
861
Tumor
0.1
661
Tumor
0.1
481
Tumor
0.1
127
Tumor
0.1
515
Tumor
0.1
353
Tumor
0.1
192
Normal
0.1
447
Tumor
0.1
217
Tumor
0.1
685
Tumor
0.1
923
Tumor
0.0
141
Tumor
0.0
666
Normal
0.0
953
Tumor
0.0
777
Tumor
0.0
352
Normal
0.0
737
Tumor
0.0
361
Tumor
0.0
132
Normal
0.0
148
Normal
0.0
574
Normal
0.0
713
Tumor
0.0
755
Tumor
0.0
428
Normal
0.0
461
Tumor
0.0
146
Normal
0.0
1015
Tumor
0.0
937
Tumor
0.0
617
Tumor
0.0
915
Tumor
0.0
138
Normal
0.0
815
Tumor
0.0
487
Tumor
0.0
136
Normal
-0.1
172
Normal
-0.1
467
Tumor
-0.1
285
Tumor
-0.1
967
Tumor
-0.1
463
Tumor
-0.1
664
Normal
-0.1
662
Normal
-0.1
536
Normal
-0.1
743
Tumor
-0.1
284
Normal
-0.1
513
Tumor
-0.1
554
Normal
-0.1
416
Normal
-0.1
186
Normal
-0.1
813
Tumor
-0.1
278
Normal
-0.1
524
Normal
-0.1
162
Normal
-0.1
395
Tumor
-0.1
1041
Tumor
-0.1
975
Tumor
-0.1
881
Tumor
-0.1
412
Normal
-0.1
224
Normal
-0.1
364
Normal
-0.1
354
Normal
-0.1
422
Normal
-0.1
564
Normal
-0.1
516
Normal
-0.1
465
Tumor
-0.1
188
Normal
-0.1
741
Tumor
-0.1
344
Normal
-0.1
434
Normal
-0.2
744
Normal
-0.2
446
Normal
-0.2
727
Tumor
-0.2
663
Tumor
-0.2
615
Tumor
-0.2
312
Normal
-0.2
142
Normal
-0.2
1021
Tumor
-0.2
268
Normal
-0.2
451
Tumor
-0.2
546
Normal
-0.2
956
Normal
-0.2
195
Tumor
-0.2
125
Tumor
-0.2
313
Tumor
-0.2
328
Normal
-0.2
1027
Tumor
-0.2
342
Normal
-0.2
432
Normal
-0.2
131
Tumor
-0.2
212
Normal
-0.2
494
Normal
-0.2
456
Normal
-0.2
464
Normal
-0.2
424
Normal
-0.2
857
Tumor
-0.2
648
Normal
-0.2
218
Normal
-0.2
423
Tumor
-0.2
391
Tumor
-0.2
426
Normal
-0.2
231
Tumor
-0.2
298
Normal
-0.2
954
Normal
-0.2
272
Normal
-0.3
358
Normal
-0.3
534
Normal
-0.3
474
Normal
-0.3
341
Tumor
-0.3
913
Tumor
-0.3
332
Normal
-0.3
112
Tumor
-0.3
126
Normal
-0.3
921
Tumor
-0.3
695
Tumor
-0.3
327
Tumor
-0.3
568
Normal
-0.3
232
Normal
-0.3
873
Tumor
-0.3
1031
Tumor
-0.3
356
Normal
-0.3
488
Normal
-0.3
228
Normal
-0.3
314
Normal
-0.3
572
Normal
-0.3
867
Tumor
-0.3
952
Normal
-0.3
557
Tumor
-0.3
286
Normal
-0.3
484
Normal
-0.3
814
Normal
-0.3
392
Normal
-0.3
111
Normal
-0.3
526
Normal
-0.3
911
Tumor
-0.3
472
Normal
-0.4
214
Normal
-0.4
384
Normal
-0.4
968
Normal
-0.4
958
Normal
-0.4
482
Normal
-0.4
436
Normal
-0.4
955
Tumor
-0.4
388
Normal
-0.4
468
Normal
-0.4
262
Normal
-0.4
982
Normal
-0.4
267
Tumor
-0.4
518
Normal
-0.4
964
Normal
-0.4
1045
Tumor
-0.4
738
Normal
-0.4
396
Normal
-0.4
222
Normal
-0.4
984
Normal
-0.4
196
Normal
-0.4
383
Tumor
-0.4
414
Normal
-0.4
728
Normal
-0.4
1014
Normal
-0.4
466
Normal
-0.4
386
Normal
-0.4
448
Normal
-0.4
641
Tumor
-0.4
558
Normal
-0.4
944
Normal
-0.4
976
Normal
-0.5
874
Normal
-0.5
258
Normal
-0.5
978
Normal
-0.5
1042
Normal
-0.5
114
Normal
-0.5
514
Normal
-0.5
916
Normal
-0.5
721
Tumor
-0.5
816
Normal
-0.5
851
Tumor
-0.5
124
Normal
-0.5
462
Normal
-0.5
723
Tumor
-0.5
128
Normal
-0.5
365
Tumor
-0.5
742
Normal
-0.5
878
Normal
-0.5
778
Normal
-0.5
918
Normal
-0.5
452
Normal
-0.5
852
Normal
-0.5
716
Normal
-0.5
394
Normal
-0.5
724
Normal
-0.5
696
Normal
-0.5
924
Normal
-0.5
865
Tumor
-0.5
686
Normal
-0.5
375
Tumor
-0.5
1016
Normal
-0.5
528
Normal
-0.5
635
Tumor
-0.6
882
Normal
-0.6
722
Normal
-0.6
966
Normal
-0.6
714
Normal
-0.6
922
Normal
-0.6
113
Tumor
-0.6
824
Normal
-0.6
914
Normal
-0.6
864
Normal
-0.6
1028
Normal
-0.6
1043
Tumor
-0.6
938
Normal
-0.6
926
Normal
-0.7
818
Normal
-0.7
866
Normal
-0.7
1026
Normal
-0.7
868
Normal
-0.7
912
Normal
-0.8
862
Normal
-0.8
756
Normal
-0.8
1032
Normal
-0.8
627
Tumor
-0.8
698
Normal
-0.8
884
Normal
-0.8
367
Tumor
-0.8
786
Normal
-0.8
1046
Normal
-0.8
858
Normal
-0.8
1044
Normal
-0.8
636
Normal
-0.8
618
Normal
-0.9
362
Normal
-0.9
628
Normal
-0.9
746
Normal
-0.9
642
Normal
-0.9
1022
Normal
-1.0
376
Normal
-1.0
616
Normal
-1.1
368
Normal
-1.2
366
Normal
-1.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
