MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:62.8 nTPM
HPA Brain:132.5 nTPM
GTEx:62.8 nTPM
FANTOM5:259.1 Scaled Tags Per Million
Pig:113.2 nTPM
Mouse:153.6 nTPM
Allen mouse:14.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 132.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 117.3
2019 Male, age 18, unknown 135.1
2666 Male, age 74, left hemisphere 130.2
2411 Female, age 72, unknown 121.3
1870 Female, age 42, unknown 119.6
1827 Male, age 72, unknown 115.5
1833 Male, age 53, unknown 114.3
1830 Male, age 51, unknown 114.0
2586 Male, age 75, left hemisphere 109.5
2828 Female, age 72, unknown 109.5
2219 Male, age 76, both hemispheres 103.8
Dorsal raphe nucleus
nTPM: 115.6
2298 Female, age 72, unknown 125.2
2750 Male, age 76, both hemispheres 122.8
2047 Male, age 72, unknown 115.9
1828 Male, age 53, unknown 115.8
2016 Female, age 72, unknown 98.4
Inferior colliculus
nTPM: 98.7
2097 Female, age 72, unknown 107.3
1848 Female, age 42, unknown 99.8
2849 Male, age 72, unknown 94.2
1890 Male, age 53, unknown 93.6
Median raphe nucleus
nTPM: 128.2
2220 Male, age 76, midline 128.2
Periaquaductal grey, anterior
nTPM: 118.0
2502 Female, age 75, unknown 131.8
1947 Male, age 18, unknown 116.6
1795 Male, age 51, unknown 105.8
Periaquaductal grey, dorsal
nTPM: 91.6
2464 Female, age 72, unknown 93.8
1831 Male, age 72, unknown 91.5
2850 Male, age 76, both hemispheres 90.7
1840 Male, age 53, unknown 90.4
Periaquaductal grey, lateral
nTPM: 93.2
2272 Male, age 74, both hemispheres 103.1
2053 Male, age 18, unknown 91.1
2140 Male, age 76, both hemispheres 85.5
Pretectal area
nTPM: 118.9
1817 Female, age 42, unknown 138.1
2007 Male, age 72, unknown 137.2
1815 Male, age 53, unknown 133.0
1816 Male, age 51, unknown 130.3
2407 Male, age 75, both hemispheres 120.2
1944 Female, age 72, unknown 119.8
2224 Female, age 72, unknown 114.1
2667 Female, age 75, unknown 114.0
2825 Male, age 18, unknown 106.1
2273 Male, age 74, both hemispheres 100.1
2316 Male, age 76, right hemisphere 94.9
Red nucleus
nTPM: 122.1
1821 Female, age 72, unknown 151.4
1865 Male, age 51, unknown 132.0
1904 Male, age 53, unknown 128.6
2785 Male, age 18, unknown 125.6
1954 Female, age 42, unknown 125.4
2503 Female, age 72, unknown 121.4
2584 Male, age 75, left hemisphere 116.3
2227 Male, age 72, unknown 115.8
2725 Female, age 75, unknown 114.4
2769 Male, age 72, unknown 114.1
2588 Male, age 74, left hemisphere 111.6
2823 Male, age 76, right hemisphere 108.9
Substantia nigra
nTPM: 132.5
1916 Female, age 42, unknown 158.8
1851 Male, age 51, unknown 152.9
2241 Male, age 72, unknown 150.5
1941 Male, age 53, unknown 137.2
1889 Female, age 72, unknown 132.0
2665 Male, age 74, both hemispheres 125.3
2699 Male, age 18, unknown 123.7
2583 Male, age 75, right hemisphere 116.1
2409 Female, age 72, unknown 114.7
2590 Female, age 75, unknown 113.6
Superior colliculus
nTPM: 114.7
2587 Male, age 74, left hemisphere 130.6
2668 Female, age 75, unknown 130.1
2261 Male, age 18, unknown 116.8
2087 Female, age 72, unknown 116.0
1796 Male, age 53, unknown 115.8
1913 Female, age 42, unknown 111.4
2664 Male, age 75, both hemispheres 110.0
1895 Male, age 76, right hemisphere 107.6
1839 Male, age 51, unknown 107.5
1995 Male, age 72, unknown 101.6
Ventral tegmental area
nTPM: 122.5
2410 Female, age 72, unknown 143.3
1915 Female, age 42, unknown 129.4
2223 Female, age 72, unknown 127.7
2218 Male, age 76, both hemispheres 123.3
1942 Male, age 51, unknown 106.0
2021 Male, age 53, unknown 105.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 62.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 62.8
Samples: 139

Max nTPM: 107.3
Min nTPM: 41.7
Std nTPM: 12.8
Median nTPM: 59.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 107.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 101.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 96.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 91.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 90.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 89.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 89.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 89.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 86.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 86.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 85.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 259.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 259.1
FF:10158-103A5 76 years, female 259.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 113.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 104.4
Samples: 4

Max nTPM: 119.2
Min nTPM: 92.3
Sample A Female 119.2
Sample B Female 92.3
Sample C Male 109.5
Sample D Male 96.4
Midbrain
nTPM: 111.1
Samples: 4

Max nTPM: 129.6
Min nTPM: 89.9
Sample A Female 129.6
Sample B Female 89.9
Sample C Male 124.8
Sample D Male 100.2
Periaqueductal gray
nTPM: 97.0
Samples: 3

Max nTPM: 109.3
Min nTPM: 88.4
Sample B Female 93.4
Sample C Male 109.3
Sample D Male 88.4
Superior colliculi
nTPM: 113.3
Samples: 4

Max nTPM: 130.1
Min nTPM: 101.7
Sample A Female 117.9
Sample B Female 101.7
Sample C Male 130.1
Sample D Male 103.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 153.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 153.6
Samples: 4

Max nTPM: 171.0
Min nTPM: 143.0
Sample A Male 143.0
Sample B Male 150.3
Sample C Female 171.0
Sample D Female 150.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 14.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.6
71616360 Antisense, RP_050927_02_G05, Mouse strain C57BL/6J (56 days, male) 14.6

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