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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CTNNBL1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
28.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
92.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
85.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
81.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
69.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
67.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
66.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
66.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
65.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
64.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
62.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
62.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
59.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
57.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
57.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
56.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
55.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
54.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
53.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
53.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
53.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
52.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
50.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
50.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
49.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
48.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
48.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
47.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
47.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
46.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
46.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
45.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
44.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
44.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
44.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
44.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
44.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
44.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
44.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
43.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
43.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
43.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
42.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
42.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
42.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
42.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
42.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
41.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
41.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
40.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
40.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
40.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
39.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
39.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
39.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
38.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
38.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
38.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
38.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
37.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
37.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
37.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
37.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
37.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
37.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
37.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
36.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
36.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
36.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
36.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
36.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
36.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
36.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
36.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
35.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
35.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
35.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
35.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
34.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
34.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
34.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
34.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
34.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
34.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
34.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
34.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
34.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
33.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
33.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
33.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
33.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
33.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
33.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
33.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
33.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
33.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
33.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
33.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
33.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
33.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
32.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
32.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
32.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
32.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
32.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
32.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
32.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
32.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
32.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
32.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
32.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
32.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
32.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
32.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
32.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
31.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
31.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
31.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
31.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
31.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
31.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
31.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
31.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
30.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
30.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
30.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
30.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
30.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
30.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
30.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
30.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
29.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
29.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
29.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
29.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
29.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
28.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
28.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
28.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
28.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
28.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
28.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
28.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
28.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
28.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
28.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
28.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
28.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
28.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
28.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
28.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
27.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
27.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
27.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
27.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
27.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
27.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
27.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
27.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
27.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
27.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
27.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
27.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
27.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
27.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
26.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
26.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
26.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
26.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
26.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
26.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
26.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
26.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
26.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
26.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
26.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
25.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
25.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
25.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
25.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
25.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
25.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
25.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
25.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
25.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
25.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
25.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
25.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
25.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
25.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
25.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
24.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
24.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
24.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
24.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
24.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
24.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
24.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
24.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
24.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
24.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
24.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
24.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
23.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
23.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
23.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
23.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
23.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
23.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
23.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
23.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
23.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
23.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
23.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
23.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
23.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
23.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
23.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
23.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
23.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
22.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
22.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
22.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
22.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
22.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
22.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
22.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
22.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
22.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
22.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
22.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
22.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
22.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
22.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
22.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
22.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
21.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
21.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
21.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
21.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
21.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
21.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
21.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
21.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
21.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
21.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
21.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
21.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
21.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
21.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
21.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
21.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
21.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
20.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
20.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
20.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
20.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
20.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
20.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
20.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
20.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
20.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
20.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
20.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
20.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
20.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
20.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
19.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
19.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
19.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
19.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
19.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
19.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
19.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
19.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
19.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
19.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
19.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
19.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
19.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
18.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
18.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
18.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
18.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
18.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
18.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
18.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
18.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
18.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
18.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
18.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
18.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
18.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
18.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
18.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
18.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
17.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
17.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
17.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
17.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
17.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
17.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
17.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
17.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
17.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
17.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
17.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
17.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
17.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
17.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
17.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
16.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
16.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
16.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
16.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
16.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
16.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
16.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
16.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
16.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
16.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
16.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
15.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
15.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
15.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
15.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
15.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
15.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
15.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
15.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
14.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
14.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
14.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
14.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
14.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
14.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
14.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
14.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
13.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
13.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
13.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
13.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
13.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
13.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
12.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
12.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
12.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
12.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
11.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
11.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
10.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
10.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
10.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
9.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
9.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
8.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
8.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CTNNBL1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.7
Number of samples
231
Samples
Sample
Description
TPM
DO23514
0 years, male, NA, stage:2, alive, 1290 days
86.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
76.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
73.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
68.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
67.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
65.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
55.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
53.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
50.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
50.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
43.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
42.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
41.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
40.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
40.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
40.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
38.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
38.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
38.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
37.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
37.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
37.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
37.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
37.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
36.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
35.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
34.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
34.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
34.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
33.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
33.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
33.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
33.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
32.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
32.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
32.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
31.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
31.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
31.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
31.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
31.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
31.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
30.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
30.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
29.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
29.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
29.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
29.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
29.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
28.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
28.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
28.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
28.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
27.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
27.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
27.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
27.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
27.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
27.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
27.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
27.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
27.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
27.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
26.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
26.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
26.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
26.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
26.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
26.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
26.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
26.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
25.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
25.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
25.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
25.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
25.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
25.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
25.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
25.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
25.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
24.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
24.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
23.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
23.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
23.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
23.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
23.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
23.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
23.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
23.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
23.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
23.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
22.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
22.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
22.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
22.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
22.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
22.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
22.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
22.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
22.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
22.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
22.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
22.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
21.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
21.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
21.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
21.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
21.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
21.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
21.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
21.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
21.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
20.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
20.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
20.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
20.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
20.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
20.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
20.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
20.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
20.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
20.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
20.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
20.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
19.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
19.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
19.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
19.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
19.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
19.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
19.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
19.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
19.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
19.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
19.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
18.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
18.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
18.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
18.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
18.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
18.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
18.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
18.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
18.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
18.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
18.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
18.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
18.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
18.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
17.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
17.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
17.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
17.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
17.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
17.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
17.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
17.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
17.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
17.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
17.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
17.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
17.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
17.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
17.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
16.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
16.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
16.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
16.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
16.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
16.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
16.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
16.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
16.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
16.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
16.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
16.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
16.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
16.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
15.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
15.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
15.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
15.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
15.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
15.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
15.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
15.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
15.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
15.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
15.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
15.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
14.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
14.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
14.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
14.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
14.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
14.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
14.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
14.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
14.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
14.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
14.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
14.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
14.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
14.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
14.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
14.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
14.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
13.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
13.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
13.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
13.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
13.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
13.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
12.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
12.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
11.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
10.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
0.7
967
Tumor
0.7
743
Tumor
0.7
1031
Tumor
0.7
351
Tumor
0.7
355
Tumor
0.6
123
Tumor
0.6
1013
Tumor
0.6
367
Tumor
0.6
331
Tumor
0.6
865
Tumor
0.6
227
Tumor
0.5
957
Tumor
0.5
647
Tumor
0.5
413
Tumor
0.5
131
Tumor
0.5
357
Tumor
0.5
1021
Tumor
0.5
877
Tumor
0.5
951
Tumor
0.5
313
Tumor
0.5
923
Tumor
0.5
715
Tumor
0.5
411
Tumor
0.4
385
Tumor
0.4
497
Tumor
0.4
391
Tumor
0.4
695
Tumor
0.4
277
Tumor
0.4
977
Tumor
0.4
533
Tumor
0.4
685
Tumor
0.4
815
Tumor
0.4
112
Tumor
0.4
425
Tumor
0.4
671
Tumor
0.3
517
Tumor
0.3
975
Tumor
0.3
981
Tumor
0.3
665
Tumor
0.3
443
Tumor
0.3
523
Tumor
0.3
661
Tumor
0.3
535
Tumor
0.3
881
Tumor
0.3
1025
Tumor
0.3
473
Tumor
0.3
883
Tumor
0.3
741
Tumor
0.3
921
Tumor
0.3
465
Tumor
0.3
663
Tumor
0.3
271
Tumor
0.3
814
Normal
0.3
483
Tumor
0.3
445
Tumor
0.3
641
Tumor
0.3
635
Tumor
0.3
813
Tumor
0.3
513
Tumor
0.2
431
Tumor
0.2
387
Tumor
0.2
435
Tumor
0.2
285
Tumor
0.2
724
Normal
0.2
571
Tumor
0.2
423
Tumor
0.2
341
Tumor
0.2
491
Tumor
0.2
737
Tumor
0.2
467
Tumor
0.2
221
Tumor
0.2
267
Tumor
0.2
161
Tumor
0.2
363
Tumor
0.2
463
Tumor
0.2
375
Tumor
0.2
727
Tumor
0.2
527
Tumor
0.2
211
Tumor
0.2
433
Tumor
0.2
447
Tumor
0.2
487
Tumor
0.2
817
Tumor
0.2
141
Tumor
0.2
963
Tumor
0.2
983
Tumor
0.2
545
Tumor
0.1
171
Tumor
0.1
953
Tumor
0.1
563
Tumor
0.1
937
Tumor
0.1
537
Tumor
0.1
427
Tumor
0.1
777
Tumor
0.1
455
Tumor
0.1
1041
Tumor
0.1
127
Tumor
0.1
185
Tumor
0.1
383
Tumor
0.1
113
Tumor
0.1
1027
Tumor
0.1
515
Tumor
0.1
217
Tumor
0.1
415
Tumor
0.1
553
Tumor
0.1
261
Tumor
0.1
925
Tumor
0.1
873
Tumor
0.1
365
Tumor
0.1
1015
Tumor
0.1
124
Normal
0.1
213
Tumor
0.1
297
Tumor
0.0
1046
Normal
0.0
356
Normal
0.0
376
Normal
0.0
368
Normal
0.0
137
Tumor
0.0
361
Tumor
0.0
568
Normal
0.0
135
Tumor
0.0
461
Tumor
0.0
477
Tumor
0.0
114
Normal
0.0
1042
Normal
0.0
943
Tumor
0.0
353
Tumor
0.0
744
Normal
0.0
574
Normal
0.0
861
Tumor
0.0
1014
Normal
0.0
328
Normal
0.0
756
Normal
0.0
434
Normal
0.0
955
Tumor
0.0
721
Tumor
0.0
618
Normal
0.0
627
Tumor
0.0
493
Tumor
0.0
628
Normal
0.0
572
Normal
0.0
785
Tumor
0.0
283
Tumor
0.0
978
Normal
0.0
471
Tumor
0.0
111
Normal
0.0
145
Tumor
0.0
867
Tumor
0.0
342
Normal
0.0
393
Tumor
0.0
915
Tumor
0.0
343
Tumor
0.0
878
Normal
0.0
616
Normal
0.0
1032
Normal
0.0
142
Normal
0.0
132
Normal
0.0
746
Normal
0.0
755
Tumor
0.0
414
Normal
0.0
786
Normal
0.0
713
Tumor
0.0
672
Normal
0.0
125
Tumor
0.0
436
Normal
0.0
738
Normal
0.0
384
Normal
0.0
922
Normal
-0.1
146
Normal
-0.1
444
Normal
-0.1
557
Tumor
-0.1
231
Tumor
-0.1
686
Normal
-0.1
421
Tumor
-0.1
696
Normal
-0.1
984
Normal
-0.1
938
Normal
-0.1
617
Tumor
-0.1
964
Normal
-0.1
636
Normal
-0.1
126
Normal
-0.1
1016
Normal
-0.1
525
Tumor
-0.1
567
Tumor
-0.1
1045
Tumor
-0.1
1028
Normal
-0.1
664
Normal
-0.1
396
Normal
-0.1
298
Normal
-0.1
451
Tumor
-0.1
982
Normal
-0.1
514
Normal
-0.1
426
Normal
-0.1
573
Tumor
-0.1
412
Normal
-0.1
917
Tumor
-0.1
528
Normal
-0.1
366
Normal
-0.1
1026
Normal
-0.1
546
Normal
-0.1
478
Normal
-0.1
697
Tumor
-0.1
386
Normal
-0.1
742
Normal
-0.1
662
Normal
-0.1
191
Tumor
-0.1
364
Normal
-0.1
136
Normal
-0.1
362
Normal
-0.1
716
Normal
-0.1
327
Tumor
-0.1
395
Tumor
-0.1
882
Normal
-0.1
416
Normal
-0.1
484
Normal
-0.1
448
Normal
-0.1
446
Normal
-0.1
262
Normal
-0.1
468
Normal
-0.1
138
Normal
-0.1
926
Normal
-0.1
864
Normal
-0.1
466
Normal
-0.1
723
Tumor
-0.1
666
Normal
-0.1
196
Normal
-0.1
424
Normal
-0.1
432
Normal
-0.1
314
Normal
-0.1
187
Tumor
-0.1
863
Tumor
-0.1
913
Tumor
-0.1
311
Tumor
-0.1
954
Normal
-0.1
388
Normal
-0.1
884
Normal
-0.1
944
Normal
-0.1
128
Normal
-0.1
526
Normal
-0.1
286
Normal
-0.1
195
Tumor
-0.1
344
Normal
-0.1
462
Normal
-0.2
912
Normal
-0.2
192
Normal
-0.2
648
Normal
-0.2
558
Normal
-0.2
482
Normal
-0.2
534
Normal
-0.2
392
Normal
-0.2
924
Normal
-0.2
268
Normal
-0.2
474
Normal
-0.2
858
Normal
-0.2
481
Tumor
-0.2
564
Normal
-0.2
394
Normal
-0.2
358
Normal
-0.2
824
Normal
-0.2
823
Tumor
-0.2
745
Tumor
-0.2
714
Normal
-0.2
958
Normal
-0.2
536
Normal
-0.2
866
Normal
-0.2
615
Tumor
-0.2
452
Normal
-0.2
428
Normal
-0.2
272
Normal
-0.2
422
Normal
-0.2
147
Tumor
-0.2
966
Normal
-0.2
1022
Normal
-0.2
862
Normal
-0.2
778
Normal
-0.2
232
Normal
-0.2
518
Normal
-0.2
976
Normal
-0.2
218
Normal
-0.2
728
Normal
-0.2
851
Tumor
-0.2
492
Normal
-0.2
472
Normal
-0.2
524
Normal
-0.2
698
Normal
-0.2
464
Normal
-0.2
554
Normal
-0.2
494
Normal
-0.2
332
Normal
-0.2
852
Normal
-0.2
874
Normal
-0.2
258
Normal
-0.2
352
Normal
-0.2
642
Normal
-0.2
857
Tumor
-0.2
1043
Tumor
-0.2
914
Normal
-0.2
538
Normal
-0.2
911
Tumor
-0.2
498
Normal
-0.2
188
Normal
-0.2
278
Normal
-0.2
186
Normal
-0.2
223
Tumor
-0.2
354
Normal
-0.2
284
Normal
-0.2
162
Normal
-0.2
952
Normal
-0.2
722
Normal
-0.2
222
Normal
-0.2
916
Normal
-0.3
956
Normal
-0.3
818
Normal
-0.3
224
Normal
-0.3
968
Normal
-0.3
488
Normal
-0.3
516
Normal
-0.3
212
Normal
-0.3
918
Normal
-0.3
172
Normal
-0.3
1044
Normal
-0.3
148
Normal
-0.3
257
Tumor
-0.3
456
Normal
-0.3
816
Normal
-0.3
312
Normal
-0.3
214
Normal
-0.3
868
Normal
-0.3
228
Normal
-0.3
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
