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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NASP is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
35.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
213.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
174.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
131.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
122.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
119.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
113.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
111.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
96.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
91.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
90.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
88.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
88.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
87.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
87.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
86.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
81.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
80.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
76.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
75.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
74.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
72.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
72.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
71.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
71.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
69.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
68.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
68.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
67.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
67.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
67.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
67.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
65.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
65.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
64.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
64.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
64.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
64.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
63.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
63.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
63.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
62.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
62.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
62.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
62.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
61.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
61.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
61.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
60.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
57.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
57.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
56.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
56.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
56.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
56.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
56.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
55.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
55.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
55.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
55.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
54.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
54.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
53.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
53.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
53.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
52.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
52.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
52.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
52.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
52.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
52.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
51.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
51.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
50.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
50.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
50.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
49.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
49.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
49.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
48.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
47.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
47.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
46.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
45.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
45.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
45.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
45.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
45.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
45.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
45.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
45.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
45.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
44.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
44.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
43.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
43.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
43.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
43.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
43.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
43.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
42.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
41.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
41.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
41.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
41.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
41.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
41.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
40.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
40.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
40.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
40.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
39.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
39.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
38.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
38.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
38.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
38.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
38.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
38.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
37.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
37.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
37.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
36.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
36.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
36.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
36.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
36.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
36.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
35.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
35.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
35.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
35.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
34.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
34.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
34.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
34.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
34.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
34.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
33.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
33.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
33.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
33.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
33.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
33.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
33.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
33.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
33.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
33.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
33.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
33.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
33.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
32.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
32.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
32.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
32.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
32.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
32.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
32.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
32.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
32.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
32.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
31.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
31.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
31.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
31.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
31.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
31.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
31.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
31.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
31.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
31.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
30.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
30.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
30.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
29.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
29.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
29.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
29.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
29.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
29.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
29.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
29.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
29.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
28.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
28.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
28.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
27.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
27.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
27.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
27.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
27.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
27.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
27.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
27.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
26.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
26.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
26.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
26.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
26.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
26.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
26.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
26.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
26.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
26.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
26.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
26.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
25.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
25.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
25.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
25.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
25.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
25.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
25.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
25.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
25.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
25.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
25.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
25.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
25.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
24.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
24.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
24.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
24.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
24.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
24.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
24.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
24.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
24.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
24.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
23.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
23.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
23.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
23.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
23.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
23.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
23.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
23.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
23.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
23.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
23.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
23.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
23.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
23.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
22.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
22.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
22.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
22.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
21.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
21.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
21.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
21.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
21.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
21.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
21.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
21.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
21.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
21.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
20.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
20.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
20.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
20.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
20.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
20.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
20.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
20.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
20.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
20.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
20.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
20.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
20.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
19.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
19.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
19.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
19.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
19.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
18.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
18.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
18.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
18.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
18.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
18.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
18.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
18.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
18.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
18.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
18.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
18.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
18.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
17.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
17.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
17.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
17.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
17.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
17.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
17.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
17.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
17.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
17.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
17.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
17.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
17.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
17.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
17.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
16.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
16.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
16.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
16.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
16.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
16.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
16.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
16.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
16.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
16.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
16.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
15.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
15.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
15.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
15.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
15.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
14.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
14.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
14.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
14.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
14.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
14.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
14.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
14.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
14.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
14.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
14.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
14.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
14.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
14.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
14.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
13.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
13.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
13.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
13.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
13.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
13.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
12.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
12.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
12.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
12.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
12.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
12.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
12.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
12.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
11.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
11.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
11.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
11.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
11.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
10.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
10.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
9.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NASP is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
37.0
Number of samples
231
Samples
Sample
Description
TPM
DO23537
0 years, male, NA, stage:2, dead, 900 days
174.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
169.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
142.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
118.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
105.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
98.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
98.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
89.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
86.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
83.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
79.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
78.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
77.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
76.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
74.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
73.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
73.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
69.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
69.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
67.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
65.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
63.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
63.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
63.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
62.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
62.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
61.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
61.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
61.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
60.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
60.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
59.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
58.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
58.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
57.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
57.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
57.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
57.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
55.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
55.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
54.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
54.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
53.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
52.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
51.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
50.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
50.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
49.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
49.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
48.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
48.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
47.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
47.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
47.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
46.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
46.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
46.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
45.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
45.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
44.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
44.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
44.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
44.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
43.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
43.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
43.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
42.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
42.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
42.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
42.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
42.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
42.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
41.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
41.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
41.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
41.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
40.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
38.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
38.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
38.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
38.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
38.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
38.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
38.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
37.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
37.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
37.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
37.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
37.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
37.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
35.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
34.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
34.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
34.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
34.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
34.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
33.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
33.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
33.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
33.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
32.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
32.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
32.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
32.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
32.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
31.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
31.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
30.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
30.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
30.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
30.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
30.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
29.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
29.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
29.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
29.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
28.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
28.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
28.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
28.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
28.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
27.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
27.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
27.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
27.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
27.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
27.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
27.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
27.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
27.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
27.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
27.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
27.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
27.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
26.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
26.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
26.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
26.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
26.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
25.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
25.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
25.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
25.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
24.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
24.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
24.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
24.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
24.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
24.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
23.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
23.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
23.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
23.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
23.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
23.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
23.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
23.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
23.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
22.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
22.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
22.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
22.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
22.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
22.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
22.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
22.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
22.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
21.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
21.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
21.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
21.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
21.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
21.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
21.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
20.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
20.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
20.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
20.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
20.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
20.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
20.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
20.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
19.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
19.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
19.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
19.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
19.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
19.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
19.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
19.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
18.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
18.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
18.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
18.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
18.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
18.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
18.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
18.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
17.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
17.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
17.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
17.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
17.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
17.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
17.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
17.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
17.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
17.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
17.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
17.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
17.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
16.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
16.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
15.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
15.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
15.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
15.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
15.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
15.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
14.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
14.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
14.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
14.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
13.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
12.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
12.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
12.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
12.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
11.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
10.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
2.1
523
Tumor
2.0
647
Tumor
1.9
957
Tumor
1.8
411
Tumor
1.6
661
Tumor
1.4
313
Tumor
1.4
535
Tumor
1.3
391
Tumor
1.3
393
Tumor
1.3
695
Tumor
1.2
355
Tumor
1.2
497
Tumor
1.2
283
Tumor
1.2
943
Tumor
1.1
537
Tumor
1.1
413
Tumor
1.1
865
Tumor
1.0
161
Tumor
1.0
487
Tumor
1.0
1013
Tumor
1.0
953
Tumor
1.0
141
Tumor
0.9
923
Tumor
0.9
663
Tumor
0.9
727
Tumor
0.9
467
Tumor
0.9
465
Tumor
0.8
125
Tumor
0.8
967
Tumor
0.8
277
Tumor
0.8
951
Tumor
0.8
473
Tumor
0.8
367
Tumor
0.8
357
Tumor
0.7
211
Tumor
0.7
724
Normal
0.6
545
Tumor
0.6
755
Tumor
0.6
463
Tumor
0.6
351
Tumor
0.6
533
Tumor
0.6
571
Tumor
0.6
385
Tumor
0.5
387
Tumor
0.5
285
Tumor
0.5
983
Tumor
0.5
743
Tumor
0.5
425
Tumor
0.5
493
Tumor
0.4
814
Normal
0.4
123
Tumor
0.4
343
Tumor
0.4
573
Tumor
0.4
737
Tumor
0.3
883
Tumor
0.3
937
Tumor
0.3
341
Tumor
0.3
525
Tumor
0.3
435
Tumor
0.3
171
Tumor
0.3
491
Tumor
0.3
527
Tumor
0.3
112
Tumor
0.3
1021
Tumor
0.3
447
Tumor
0.2
423
Tumor
0.2
913
Tumor
0.2
813
Tumor
0.2
977
Tumor
0.2
375
Tumor
0.2
267
Tumor
0.2
635
Tumor
0.2
427
Tumor
0.2
966
Normal
0.2
483
Tumor
0.2
671
Tumor
0.2
231
Tumor
0.1
185
Tumor
0.1
741
Tumor
0.1
861
Tumor
0.1
481
Tumor
0.1
873
Tumor
0.1
517
Tumor
0.1
1015
Tumor
0.1
881
Tumor
0.1
331
Tumor
0.1
477
Tumor
0.1
1031
Tumor
0.1
665
Tumor
0.0
213
Tumor
0.0
431
Tumor
0.0
975
Tumor
0.0
311
Tumor
0.0
817
Tumor
0.0
917
Tumor
0.0
433
Tumor
0.0
445
Tumor
0.0
713
Tumor
0.0
815
Tumor
0.0
685
Tumor
0.0
195
Tumor
0.0
921
Tumor
0.0
777
Tumor
0.0
536
Normal
0.0
925
Tumor
0.0
1045
Tumor
-0.1
524
Normal
-0.1
191
Tumor
-0.1
498
Normal
-0.1
557
Tumor
-0.1
383
Tumor
-0.1
217
Tumor
-0.1
513
Tumor
-0.1
297
Tumor
-0.1
877
Tumor
-0.1
361
Tumor
-0.1
851
Tumor
-0.1
261
Tumor
-0.1
878
Normal
-0.1
187
Tumor
-0.1
131
Tumor
-0.2
415
Tumor
-0.2
546
Normal
-0.2
127
Tumor
-0.2
915
Tumor
-0.2
227
Tumor
-0.2
938
Normal
-0.2
488
Normal
-0.2
964
Normal
-0.2
911
Tumor
-0.2
1043
Tumor
-0.2
958
Normal
-0.2
492
Normal
-0.2
412
Normal
-0.2
448
Normal
-0.2
113
Tumor
-0.2
978
Normal
-0.3
954
Normal
-0.3
721
Tumor
-0.3
1014
Normal
-0.3
516
Normal
-0.3
538
Normal
-0.3
461
Tumor
-0.3
1025
Tumor
-0.3
257
Tumor
-0.3
916
Normal
-0.3
963
Tumor
-0.3
857
Tumor
-0.3
444
Normal
-0.3
924
Normal
-0.3
1027
Tumor
-0.3
515
Tumor
-0.3
1041
Tumor
-0.3
534
Normal
-0.3
478
Normal
-0.3
142
Normal
-0.3
698
Normal
-0.3
866
Normal
-0.3
715
Tumor
-0.3
223
Tumor
-0.3
662
Normal
-0.3
484
Normal
-0.3
744
Normal
-0.3
976
Normal
-0.3
358
Normal
-0.3
563
Tumor
-0.3
394
Normal
-0.3
1016
Normal
-0.3
258
Normal
-0.3
1028
Normal
-0.3
944
Normal
-0.3
912
Normal
-0.3
1022
Normal
-0.3
882
Normal
-0.3
554
Normal
-0.3
1046
Normal
-0.3
615
Tumor
-0.3
314
Normal
-0.3
386
Normal
-0.3
352
Normal
-0.3
863
Tumor
-0.4
922
Normal
-0.4
284
Normal
-0.4
224
Normal
-0.4
332
Normal
-0.4
443
Tumor
-0.4
984
Normal
-0.4
648
Normal
-0.4
1026
Normal
-0.4
434
Normal
-0.4
567
Tumor
-0.4
1032
Normal
-0.4
272
Normal
-0.4
914
Normal
-0.4
884
Normal
-0.4
785
Tumor
-0.4
858
Normal
-0.4
268
Normal
-0.4
365
Tumor
-0.4
617
Tumor
-0.4
1042
Normal
-0.4
286
Normal
-0.4
981
Tumor
-0.4
824
Normal
-0.4
364
Normal
-0.4
518
Normal
-0.4
138
Normal
-0.4
132
Normal
-0.4
526
Normal
-0.4
262
Normal
-0.4
356
Normal
-0.4
354
Normal
-0.4
232
Normal
-0.4
124
Normal
-0.4
982
Normal
-0.4
342
Normal
-0.4
494
Normal
-0.4
136
Normal
-0.4
696
Normal
-0.4
528
Normal
-0.4
818
Normal
-0.4
926
Normal
-0.4
952
Normal
-0.4
1044
Normal
-0.4
137
Tumor
-0.5
468
Normal
-0.5
212
Normal
-0.5
666
Normal
-0.5
312
Normal
-0.5
918
Normal
-0.5
823
Tumor
-0.5
384
Normal
-0.5
344
Normal
-0.5
416
Normal
-0.5
864
Normal
-0.5
363
Tumor
-0.5
298
Normal
-0.5
278
Normal
-0.5
114
Normal
-0.5
422
Normal
-0.5
172
Normal
-0.5
697
Tumor
-0.5
956
Normal
-0.5
742
Normal
-0.5
428
Normal
-0.5
852
Normal
-0.5
455
Tumor
-0.5
424
Normal
-0.5
228
Normal
-0.5
426
Normal
-0.5
392
Normal
-0.5
368
Normal
-0.5
192
Normal
-0.5
388
Normal
-0.5
627
Tumor
-0.5
968
Normal
-0.5
686
Normal
-0.5
414
Normal
-0.5
672
Normal
-0.5
148
Normal
-0.5
126
Normal
-0.5
162
Normal
-0.5
572
Normal
-0.5
366
Normal
-0.5
456
Normal
-0.5
111
Normal
-0.5
186
Normal
-0.6
482
Normal
-0.6
664
Normal
-0.6
353
Tumor
-0.6
328
Normal
-0.6
514
Normal
-0.6
188
Normal
-0.6
955
Tumor
-0.6
436
Normal
-0.6
462
Normal
-0.6
432
Normal
-0.6
396
Normal
-0.6
778
Normal
-0.6
362
Normal
-0.6
568
Normal
-0.6
471
Tumor
-0.6
723
Tumor
-0.6
867
Tumor
-0.6
451
Tumor
-0.6
714
Normal
-0.6
636
Normal
-0.6
474
Normal
-0.6
738
Normal
-0.6
466
Normal
-0.6
716
Normal
-0.6
221
Tumor
-0.6
472
Normal
-0.6
271
Tumor
-0.6
862
Normal
-0.6
628
Normal
-0.6
376
Normal
-0.6
446
Normal
-0.6
128
Normal
-0.6
574
Normal
-0.6
464
Normal
-0.6
642
Normal
-0.6
641
Tumor
-0.6
874
Normal
-0.6
816
Normal
-0.7
618
Normal
-0.7
558
Normal
-0.7
722
Normal
-0.7
421
Tumor
-0.7
553
Tumor
-0.7
452
Normal
-0.7
756
Normal
-0.7
196
Normal
-0.7
564
Normal
-0.7
728
Normal
-0.7
146
Normal
-0.7
745
Tumor
-0.7
135
Tumor
-0.7
616
Normal
-0.8
786
Normal
-0.8
222
Normal
-0.8
145
Tumor
-0.8
218
Normal
-0.8
214
Normal
-0.8
327
Tumor
-0.8
868
Normal
-0.8
147
Tumor
-0.8
746
Normal
-0.8
395
Tumor
-0.9
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
