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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DCAF8 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
40.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
127.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
121.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
121.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
110.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
101.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
98.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
94.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
91.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
91.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
83.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
83.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
82.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
81.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
81.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
81.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
78.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
77.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
77.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
77.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
74.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
74.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
73.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
73.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
71.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
71.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
69.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
68.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
67.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
67.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
67.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
66.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
66.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
66.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
65.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
65.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
64.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
64.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
64.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
64.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
63.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
63.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
63.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
63.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
63.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
62.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
62.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
62.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
62.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
62.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
62.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
61.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
61.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
61.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
61.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
61.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
61.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
60.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
60.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
60.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
60.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
59.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
57.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
57.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
57.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
56.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
56.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
56.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
56.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
56.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
56.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
55.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
55.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
55.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
55.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
55.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
55.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
55.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
55.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
55.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
54.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
54.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
53.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
53.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
53.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
53.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
53.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
53.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
53.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
53.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
53.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
53.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
52.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
52.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
52.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
52.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
52.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
52.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
51.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
51.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
50.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
50.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
50.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
50.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
50.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
49.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
49.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
49.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
49.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
49.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
48.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
48.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
48.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
48.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
48.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
48.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
48.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
48.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
48.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
47.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
47.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
47.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
47.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
46.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
46.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
46.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
46.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
46.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
46.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
46.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
45.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
45.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
45.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
45.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
44.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
44.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
44.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
44.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
43.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
43.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
43.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
43.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
43.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
43.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
43.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
42.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
42.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
42.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
42.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
42.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
41.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
41.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
41.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
40.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
39.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
39.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
39.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
39.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
39.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
39.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
39.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
39.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
39.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
38.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
38.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
38.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
38.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
38.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
38.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
37.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
37.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
36.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
36.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
36.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
36.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
36.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
36.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
36.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
35.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
35.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
35.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
35.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
34.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
34.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
34.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
34.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
34.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
34.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
34.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
34.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
34.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
33.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
33.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
33.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
33.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
33.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
33.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
33.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
33.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
33.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
33.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
32.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
32.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
32.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
32.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
32.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
32.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
32.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
31.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
31.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
31.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
31.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
31.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
31.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
31.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
31.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
31.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
30.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
30.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
30.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
30.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
30.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
30.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
30.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
30.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
30.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
30.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
30.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
29.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
29.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
29.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
29.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
29.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
29.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
29.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
29.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
29.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
29.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
29.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
29.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
29.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
28.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
28.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
28.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
28.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
28.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
28.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
28.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
28.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
27.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
27.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
27.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
27.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
27.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
27.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
27.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
27.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
27.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
26.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
26.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
26.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
26.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
26.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
26.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
26.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
26.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
26.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
26.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
25.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
25.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
25.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
25.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
25.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
25.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
24.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
24.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
24.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
24.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
24.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
23.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
23.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
23.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
23.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
23.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
23.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
23.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
23.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
23.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
22.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
22.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
22.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
22.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
22.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
22.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
22.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
22.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
22.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
22.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
22.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
21.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
21.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
21.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
21.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
21.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
21.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
21.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
20.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
20.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
20.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
20.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
20.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
20.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
20.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
20.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
20.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
19.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
19.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
19.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
19.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
19.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
19.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
19.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
19.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
19.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
18.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
18.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
18.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
18.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
18.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
18.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
18.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
18.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
17.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
17.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
17.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
16.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
16.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
16.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
16.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
16.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
15.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
15.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
15.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
15.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
15.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
15.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
15.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
15.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
14.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
14.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
14.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
13.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
12.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
12.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
11.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
11.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
11.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
11.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
10.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DCAF8 is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
52.6
Number of samples
231
Samples
Sample
Description
TPM
DO45253
0 years, male, NA, stage:2, alive, 870 days
196.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
115.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
109.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
101.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
96.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
95.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
92.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
90.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
90.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
89.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
88.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
85.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
85.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
85.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
84.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
84.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
82.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
79.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
79.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
79.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
78.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
78.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
78.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
78.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
77.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
77.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
77.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
77.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
76.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
76.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
74.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
74.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
73.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
73.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
73.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
73.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
71.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
71.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
71.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
71.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
70.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
70.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
69.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
69.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
69.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
68.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
68.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
68.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
68.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
68.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
67.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
67.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
67.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
67.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
66.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
66.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
66.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
65.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
65.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
65.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
64.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
64.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
63.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
63.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
63.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
63.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
63.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
62.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
62.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
62.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
62.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
61.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
61.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
61.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
60.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
59.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
59.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
59.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
58.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
57.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
57.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
57.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
57.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
57.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
57.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
56.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
56.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
55.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
55.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
55.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
55.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
54.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
54.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
54.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
54.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
54.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
53.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
53.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
53.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
53.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
53.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
53.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
53.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
53.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
53.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
53.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
53.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
52.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
52.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
52.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
51.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
51.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
51.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
50.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
50.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
50.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
50.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
49.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
49.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
48.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
48.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
48.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
48.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
48.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
48.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
48.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
48.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
48.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
47.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
47.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
47.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
47.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
46.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
46.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
46.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
45.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
45.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
45.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
44.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
44.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
44.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
44.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
44.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
44.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
43.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
43.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
43.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
43.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
42.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
42.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
42.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
42.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
42.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
42.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
42.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
42.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
41.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
41.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
41.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
41.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
41.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
41.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
40.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
40.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
40.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
39.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
39.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
39.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
39.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
39.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
38.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
38.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
38.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
38.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
37.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
37.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
37.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
36.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
36.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
36.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
35.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
35.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
35.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
35.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
35.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
34.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
34.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
34.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
34.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
34.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
34.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
33.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
32.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
32.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
32.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
31.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
31.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
31.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
31.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
31.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
30.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
30.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
30.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
30.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
30.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
30.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
28.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
28.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
27.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
27.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
26.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
26.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
26.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
26.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
26.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
26.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
25.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
24.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
24.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
23.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
22.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
22.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
22.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
22.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
22.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
21.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
20.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
19.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
17.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
17.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
13.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
477
Tumor
1.0
147
Tumor
1.0
327
Tumor
0.9
533
Tumor
0.8
427
Tumor
0.8
867
Tumor
0.7
1027
Tumor
0.7
191
Tumor
0.7
915
Tumor
0.6
745
Tumor
0.6
925
Tumor
0.6
861
Tumor
0.6
435
Tumor
0.6
515
Tumor
0.6
567
Tumor
0.5
527
Tumor
0.5
777
Tumor
0.5
553
Tumor
0.5
471
Tumor
0.5
715
Tumor
0.5
1041
Tumor
0.4
857
Tumor
0.4
977
Tumor
0.4
161
Tumor
0.4
1025
Tumor
0.4
466
Normal
0.4
123
Tumor
0.4
445
Tumor
0.4
813
Tumor
0.3
1043
Tumor
0.3
912
Normal
0.3
1031
Tumor
0.3
513
Tumor
0.3
443
Tumor
0.3
665
Tumor
0.3
393
Tumor
0.3
436
Normal
0.3
873
Tumor
0.3
865
Tumor
0.3
431
Tumor
0.3
981
Tumor
0.3
884
Normal
0.3
911
Tumor
0.3
267
Tumor
0.3
746
Normal
0.3
741
Tumor
0.3
953
Tumor
0.3
525
Tumor
0.3
756
Normal
0.3
786
Normal
0.2
641
Tumor
0.2
616
Normal
0.2
353
Tumor
0.2
636
Normal
0.2
1013
Tumor
0.2
858
Normal
0.2
221
Tumor
0.2
213
Tumor
0.2
618
Normal
0.2
218
Normal
0.2
563
Tumor
0.2
568
Normal
0.2
518
Normal
0.2
778
Normal
0.2
1026
Normal
0.2
952
Normal
0.2
882
Normal
0.2
628
Normal
0.2
558
Normal
0.2
257
Tumor
0.2
162
Normal
0.2
196
Normal
0.2
483
Tumor
0.2
523
Tumor
0.2
955
Tumor
0.2
824
Normal
0.2
332
Normal
0.2
446
Normal
0.2
554
Normal
0.2
738
Normal
0.2
526
Normal
0.2
685
Tumor
0.1
572
Normal
0.1
137
Tumor
0.1
358
Normal
0.1
862
Normal
0.1
186
Normal
0.1
145
Tumor
0.1
1021
Tumor
0.1
172
Normal
0.1
461
Tumor
0.1
785
Tumor
0.1
852
Normal
0.1
412
Normal
0.1
462
Normal
0.1
493
Tumor
0.1
394
Normal
0.1
728
Normal
0.1
491
Tumor
0.1
414
Normal
0.1
432
Normal
0.1
222
Normal
0.1
261
Tumor
0.1
481
Tumor
0.1
214
Normal
0.1
866
Normal
0.1
965
Tumor
0.1
188
Normal
0.1
723
Tumor
0.1
392
Normal
0.1
328
Normal
0.1
1016
Normal
0.1
356
Normal
0.1
516
Normal
0.1
823
Tumor
0.1
514
Normal
0.1
714
Normal
0.1
642
Normal
0.1
342
Normal
0.1
816
Normal
0.1
355
Tumor
0.1
314
Normal
0.1
232
Normal
0.1
818
Normal
0.1
564
Normal
0.1
737
Tumor
0.1
361
Tumor
0.1
298
Normal
0.1
968
Normal
0.1
434
Normal
0.1
868
Normal
0.1
956
Normal
0.1
574
Normal
0.1
474
Normal
0.1
967
Tumor
0.1
416
Normal
0.1
388
Normal
0.1
428
Normal
0.1
426
Normal
0.1
148
Normal
0.1
696
Normal
0.1
627
Tumor
0.1
1042
Normal
0.0
662
Normal
0.0
755
Tumor
0.0
464
Normal
0.0
648
Normal
0.0
286
Normal
0.0
874
Normal
0.0
128
Normal
0.0
528
Normal
0.0
742
Normal
0.0
472
Normal
0.0
864
Normal
0.0
362
Normal
0.0
482
Normal
0.0
666
Normal
0.0
664
Normal
0.0
938
Normal
0.0
224
Normal
0.0
278
Normal
0.0
111
Normal
0.0
1022
Normal
0.0
468
Normal
0.0
424
Normal
0.0
716
Normal
0.0
228
Normal
0.0
883
Tumor
0.0
484
Normal
0.0
944
Normal
0.0
966
Normal
0.0
494
Normal
0.0
258
Normal
0.0
357
Tumor
0.0
538
Normal
0.0
881
Tumor
0.0
415
Tumor
0.0
975
Tumor
0.0
136
Normal
0.0
957
Tumor
0.0
727
Tumor
0.0
212
Normal
0.0
924
Normal
0.0
386
Normal
0.0
914
Normal
0.0
211
Tumor
0.0
396
Normal
0.0
1032
Normal
0.0
686
Normal
0.0
546
Normal
0.0
113
Tumor
0.0
272
Normal
0.0
141
Tumor
0.0
132
Normal
0.0
722
Normal
0.0
534
Normal
0.0
433
Tumor
0.0
1014
Normal
0.0
1028
Normal
0.0
187
Tumor
0.0
982
Normal
0.0
465
Tumor
0.0
545
Tumor
0.0
456
Normal
-0.1
926
Normal
-0.1
368
Normal
-0.1
557
Tumor
-0.1
142
Normal
-0.1
364
Normal
-0.1
114
Normal
-0.1
312
Normal
-0.1
268
Normal
-0.1
698
Normal
-0.1
984
Normal
-0.1
964
Normal
-0.1
918
Normal
-0.1
863
Tumor
-0.1
492
Normal
-0.1
313
Tumor
-0.1
231
Tumor
-0.1
171
Tumor
-0.1
958
Normal
-0.1
354
Normal
-0.1
517
Tumor
-0.1
421
Tumor
-0.1
135
Tumor
-0.1
976
Normal
-0.1
978
Normal
-0.1
724
Normal
-0.1
227
Tumor
-0.1
422
Normal
-0.1
963
Tumor
-0.1
271
Tumor
-0.1
126
Normal
-0.1
452
Normal
-0.1
124
Normal
-0.1
878
Normal
-0.1
1046
Normal
-0.1
743
Tumor
-0.1
365
Tumor
-0.1
366
Normal
-0.1
376
Normal
-0.1
411
Tumor
-0.1
922
Normal
-0.1
192
Normal
-0.1
195
Tumor
-0.1
444
Normal
-0.1
344
Normal
-0.1
352
Normal
-0.1
262
Normal
-0.1
146
Normal
-0.1
284
Normal
-0.1
672
Normal
-0.1
744
Normal
-0.1
473
Tumor
-0.2
478
Normal
-0.2
951
Tumor
-0.2
125
Tumor
-0.2
451
Tumor
-0.2
954
Normal
-0.2
573
Tumor
-0.2
112
Tumor
-0.2
877
Tumor
-0.2
615
Tumor
-0.2
1015
Tumor
-0.2
455
Tumor
-0.2
448
Normal
-0.2
913
Tumor
-0.2
916
Normal
-0.2
387
Tumor
-0.2
138
Normal
-0.2
1044
Normal
-0.2
384
Normal
-0.2
127
Tumor
-0.2
285
Tumor
-0.2
217
Tumor
-0.2
185
Tumor
-0.2
524
Normal
-0.2
383
Tumor
-0.2
814
Normal
-0.2
277
Tumor
-0.3
488
Normal
-0.3
425
Tumor
-0.3
923
Tumor
-0.3
721
Tumor
-0.3
423
Tumor
-0.3
498
Normal
-0.3
223
Tumor
-0.3
663
Tumor
-0.3
647
Tumor
-0.3
395
Tumor
-0.3
1045
Tumor
-0.3
697
Tumor
-0.3
536
Normal
-0.3
375
Tumor
-0.4
851
Tumor
-0.4
297
Tumor
-0.4
131
Tumor
-0.4
815
Tumor
-0.4
943
Tumor
-0.4
571
Tumor
-0.5
363
Tumor
-0.5
617
Tumor
-0.5
817
Tumor
-0.5
447
Tumor
-0.5
331
Tumor
-0.5
467
Tumor
-0.6
713
Tumor
-0.6
535
Tumor
-0.6
695
Tumor
-0.6
917
Tumor
-0.6
537
Tumor
-0.6
283
Tumor
-0.7
921
Tumor
-0.7
497
Tumor
-0.7
341
Tumor
-0.7
385
Tumor
-0.7
463
Tumor
-0.8
367
Tumor
-0.8
635
Tumor
-0.8
351
Tumor
-0.9
983
Tumor
-0.9
671
Tumor
-1.0
391
Tumor
-1.0
311
Tumor
-1.0
937
Tumor
-1.0
413
Tumor
-1.1
343
Tumor
-1.1
487
Tumor
-1.2
661
Tumor
-1.3
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
