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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
KHDC4 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
46.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
39.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
34.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
34.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
30.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
30.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
29.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
28.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
26.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
25.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
23.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
22.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
22.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
21.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
21.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
20.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
20.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
19.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
19.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
19.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
19.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
18.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
18.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
17.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
17.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
17.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
16.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
16.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
16.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
16.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
15.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
15.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
15.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
15.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
15.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
15.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
15.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
14.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
14.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
14.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
14.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
14.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
14.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
14.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
14.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
14.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
13.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
13.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
13.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
13.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
13.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
13.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
13.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
13.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
13.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
12.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
12.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
12.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
12.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
12.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
12.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
12.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
12.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
12.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
11.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
11.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
11.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
11.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
11.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
11.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
11.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
11.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
10.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
10.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
10.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
10.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
10.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
10.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
10.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
10.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
10.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
9.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
9.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
9.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
9.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
9.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
9.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
9.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
9.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
9.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
9.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
9.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
9.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
9.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
9.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
9.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
9.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
9.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
9.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
9.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
9.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
9.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
8.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
8.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
8.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
8.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
8.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
8.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
8.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
8.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
8.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
8.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
8.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
8.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
8.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
8.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
8.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
7.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
7.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
7.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
7.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
7.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
7.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
7.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
6.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
6.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
6.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
6.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
6.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
6.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
6.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
6.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
5.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
5.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
5.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
5.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
5.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
5.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
5.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
5.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
5.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
4.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
4.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
4.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
3.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
3.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
2.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
1.4
1013
Tumor
1.3
977
Tumor
1.2
641
Tumor
1.1
951
Tumor
1.1
957
Tumor
1.1
865
Tumor
1.0
983
Tumor
0.8
355
Tumor
0.8
695
Tumor
0.8
487
Tumor
0.7
411
Tumor
0.7
131
Tumor
0.7
953
Tumor
0.7
427
Tumor
0.7
443
Tumor
0.6
161
Tumor
0.6
698
Normal
0.6
1021
Tumor
0.6
1044
Normal
0.6
135
Tumor
0.6
545
Tumor
0.6
571
Tumor
0.5
473
Tumor
0.5
517
Tumor
0.5
661
Tumor
0.5
497
Tumor
0.5
331
Tumor
0.5
211
Tumor
0.5
423
Tumor
0.5
537
Tumor
0.5
357
Tumor
0.5
434
Normal
0.5
663
Tumor
0.5
1045
Tumor
0.5
615
Tumor
0.5
425
Tumor
0.5
431
Tumor
0.5
877
Tumor
0.4
777
Tumor
0.4
1025
Tumor
0.4
867
Tumor
0.4
271
Tumor
0.4
743
Tumor
0.4
415
Tumor
0.4
141
Tumor
0.4
617
Tumor
0.4
536
Normal
0.4
1046
Normal
0.4
231
Tumor
0.4
1031
Tumor
0.4
446
Normal
0.4
567
Tumor
0.4
714
Normal
0.4
724
Normal
0.4
527
Tumor
0.4
444
Normal
0.4
482
Normal
0.4
285
Tumor
0.4
523
Tumor
0.4
393
Tumor
0.4
1041
Tumor
0.3
448
Normal
0.3
923
Tumor
0.3
383
Tumor
0.3
665
Tumor
0.3
447
Tumor
0.3
861
Tumor
0.3
533
Tumor
0.3
696
Normal
0.3
213
Tumor
0.3
553
Tumor
0.3
436
Normal
0.3
716
Normal
0.3
433
Tumor
0.3
385
Tumor
0.3
911
Tumor
0.3
943
Tumor
0.3
391
Tumor
0.3
351
Tumor
0.3
975
Tumor
0.3
313
Tumor
0.3
978
Normal
0.3
722
Normal
0.3
387
Tumor
0.3
785
Tumor
0.3
395
Tumor
0.2
298
Normal
0.2
984
Normal
0.2
745
Tumor
0.2
715
Tumor
0.2
455
Tumor
0.2
277
Tumor
0.2
815
Tumor
0.2
221
Tumor
0.2
963
Tumor
0.2
813
Tumor
0.2
685
Tumor
0.2
721
Tumor
0.2
123
Tumor
0.2
863
Tumor
0.2
814
Normal
0.2
727
Tumor
0.2
472
Normal
0.2
921
Tumor
0.2
647
Tumor
0.2
297
Tumor
0.2
627
Tumor
0.2
817
Tumor
0.2
314
Normal
0.2
445
Tumor
0.2
375
Tumor
0.2
467
Tumor
0.2
137
Tumor
0.2
363
Tumor
0.2
477
Tumor
0.2
332
Normal
0.2
881
Tumor
0.2
955
Tumor
0.2
124
Normal
0.2
267
Tumor
0.2
465
Tumor
0.2
227
Tumor
0.1
1043
Tumor
0.1
535
Tumor
0.1
471
Tumor
0.1
755
Tumor
0.1
686
Normal
0.1
328
Normal
0.1
697
Tumor
0.1
461
Tumor
0.1
1014
Normal
0.1
386
Normal
0.1
343
Tumor
0.1
515
Tumor
0.1
478
Normal
0.1
563
Tumor
0.1
342
Normal
0.1
462
Normal
0.1
498
Normal
0.1
341
Tumor
0.1
967
Tumor
0.1
283
Tumor
0.1
421
Tumor
0.1
327
Tumor
0.1
756
Normal
0.1
451
Tumor
0.1
257
Tumor
0.1
278
Normal
0.1
513
Tumor
0.1
741
Tumor
0.1
365
Tumor
0.1
1015
Tumor
0.1
525
Tumor
0.1
883
Tumor
0.1
744
Normal
0.1
484
Normal
0.0
416
Normal
0.0
737
Tumor
0.0
412
Normal
0.0
713
Tumor
0.0
671
Tumor
0.0
432
Normal
0.0
492
Normal
0.0
573
Tumor
0.0
557
Tumor
0.0
435
Tumor
0.0
428
Normal
0.0
268
Normal
0.0
217
Tumor
0.0
628
Normal
0.0
491
Tumor
0.0
392
Normal
0.0
366
Normal
0.0
616
Normal
0.0
145
Tumor
0.0
112
Tumor
0.0
146
Normal
0.0
286
Normal
0.0
851
Tumor
0.0
396
Normal
0.0
635
Tumor
0.0
728
Normal
0.0
426
Normal
0.0
858
Normal
0.0
914
Normal
0.0
148
Normal
0.0
413
Tumor
0.0
394
Normal
0.0
312
Normal
0.0
494
Normal
0.0
481
Tumor
0.0
474
Normal
0.0
192
Normal
0.0
558
Normal
0.0
742
Normal
0.0
132
Normal
0.0
818
Normal
0.0
954
Normal
0.0
982
Normal
0.0
642
Normal
0.0
364
Normal
0.0
857
Tumor
0.0
488
Normal
0.0
564
Normal
0.0
937
Tumor
0.0
786
Normal
0.0
162
Normal
0.0
361
Tumor
0.0
367
Tumor
-0.1
344
Normal
-0.1
191
Tumor
-0.1
572
Normal
-0.1
913
Tumor
-0.1
228
Normal
-0.1
463
Tumor
-0.1
424
Normal
-0.1
1016
Normal
-0.1
966
Normal
-0.1
376
Normal
-0.1
493
Tumor
-0.1
938
Normal
-0.1
1028
Normal
-0.1
388
Normal
-0.1
138
Normal
-0.1
823
Tumor
-0.1
483
Tumor
-0.1
554
Normal
-0.1
723
Tumor
-0.1
142
Normal
-0.1
222
Normal
-0.1
136
Normal
-0.1
368
Normal
-0.1
915
Tumor
-0.1
926
Normal
-0.1
952
Normal
-0.1
514
Normal
-0.1
384
Normal
-0.1
125
Tumor
-0.1
852
Normal
-0.1
362
Normal
-0.1
816
Normal
-0.1
568
Normal
-0.1
232
Normal
-0.1
187
Tumor
-0.1
746
Normal
-0.1
738
Normal
-0.1
414
Normal
-0.1
574
Normal
-0.1
214
Normal
-0.1
353
Tumor
-0.1
874
Normal
-0.1
778
Normal
-0.1
171
Tumor
-0.2
311
Tumor
-0.2
196
Normal
-0.2
272
Normal
-0.2
538
Normal
-0.2
958
Normal
-0.2
664
Normal
-0.2
223
Tumor
-0.2
147
Tumor
-0.2
924
Normal
-0.2
358
Normal
-0.2
356
Normal
-0.2
422
Normal
-0.2
864
Normal
-0.2
258
Normal
-0.2
981
Tumor
-0.2
968
Normal
-0.2
218
Normal
-0.2
516
Normal
-0.2
1042
Normal
-0.2
1026
Normal
-0.2
262
Normal
-0.2
618
Normal
-0.2
195
Tumor
-0.2
284
Normal
-0.2
1027
Tumor
-0.2
944
Normal
-0.2
212
Normal
-0.2
878
Normal
-0.2
976
Normal
-0.2
261
Tumor
-0.2
824
Normal
-0.2
964
Normal
-0.3
546
Normal
-0.3
526
Normal
-0.3
873
Tumor
-0.3
882
Normal
-0.3
534
Normal
-0.3
172
Normal
-0.3
912
Normal
-0.3
868
Normal
-0.3
916
Normal
-0.3
866
Normal
-0.3
862
Normal
-0.3
224
Normal
-0.3
524
Normal
-0.3
648
Normal
-0.3
884
Normal
-0.3
662
Normal
-0.3
128
Normal
-0.3
186
Normal
-0.3
956
Normal
-0.3
1022
Normal
-0.3
528
Normal
-0.3
918
Normal
-0.3
185
Tumor
-0.4
922
Normal
-0.4
925
Tumor
-0.4
113
Tumor
-0.4
126
Normal
-0.4
352
Normal
-0.4
917
Tumor
-0.4
456
Normal
-0.4
518
Normal
-0.4
188
Normal
-0.5
666
Normal
-0.5
1032
Normal
-0.5
354
Normal
-0.5
114
Normal
-0.5
111
Normal
-0.5
468
Normal
-0.6
452
Normal
-0.6
672
Normal
-0.6
127
Tumor
-0.7
466
Normal
-0.8
636
Normal
-0.8
464
Normal
-0.8
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
