We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SNAP25 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
2.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
145.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
56.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
47.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
29.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
26.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
26.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
26.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
26.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
20.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
19.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
18.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
16.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
16.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
15.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
13.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
13.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
12.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
11.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
11.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
10.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
10.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
10.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
8.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
6.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
6.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
6.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
5.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
5.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
5.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
5.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
4.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
4.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
4.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
4.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
4.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
4.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
4.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
4.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
4.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
3.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
3.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
3.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
3.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
3.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
3.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
3.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
3.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
3.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
2.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
2.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
2.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
2.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
2.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
2.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
2.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
2.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
2.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
2.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
2.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
2.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
2.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
2.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
2.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
2.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
2.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
2.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
2.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
2.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
2.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
2.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
2.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
2.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
1.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
1.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
1.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
1.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
1.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
1.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
1.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
1.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
1.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
1.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
1.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
1.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
1.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
1.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
1.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
1.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
1.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
1.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
1.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
1.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
1.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
1.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
0.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
0.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
0.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
0.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
0.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
0.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
0.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SNAP25 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.7
Number of samples
231
Samples
Sample
Description
TPM
DO23526
0 years, male, NA, stage:3, alive, 1050 days
57.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
56.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
47.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
41.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
37.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
36.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
33.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
29.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
28.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
22.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
21.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
21.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
21.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
19.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
18.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
17.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
16.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
15.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
14.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
14.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
13.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
12.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
10.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
10.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
10.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
9.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
9.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
9.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
9.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
8.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
7.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
7.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
7.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
5.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
5.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
5.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
5.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
5.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
5.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
5.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
5.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
5.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
4.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
4.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
4.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
4.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
4.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
4.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
4.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
3.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
3.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
3.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
3.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
3.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
3.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
3.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
3.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
3.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
3.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
3.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
2.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
2.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
2.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
2.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
2.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
2.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
2.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
2.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
2.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
2.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
2.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
2.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
2.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
2.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
2.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
2.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
2.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
2.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
2.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
2.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
2.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
2.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
1.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
1.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
1.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
1.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
1.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
1.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
1.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
1.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
1.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
1.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
1.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
1.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
1.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
1.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
1.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
1.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
1.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
1.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
1.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
1.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
1.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
1.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
1.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
1.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
1.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
1.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
1.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
1.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
1.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
1.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
1.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
1.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
1.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
1.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
1.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
1.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
0.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
0.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
0.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
0.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
0.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
0.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
0.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
0.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
0.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
0.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
0.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
0.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
0.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
0.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
0.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
0.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
0.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
0.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
0.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
0.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
0.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
0.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
545
Tumor
2.4
671
Tumor
2.2
131
Tumor
2.1
211
Tumor
2.0
743
Tumor
1.9
737
Tumor
1.6
965
Tumor
1.6
463
Tumor
1.5
881
Tumor
1.5
951
Tumor
1.3
967
Tumor
1.3
455
Tumor
1.2
113
Tumor
1.1
665
Tumor
0.9
672
Normal
0.9
523
Tumor
0.8
517
Tumor
0.8
283
Tumor
0.8
878
Normal
0.8
963
Tumor
0.8
535
Tumor
0.8
727
Tumor
0.7
867
Tumor
0.6
943
Tumor
0.6
877
Tumor
0.6
286
Normal
0.6
192
Normal
0.5
212
Normal
0.5
125
Tumor
0.5
958
Normal
0.4
518
Normal
0.4
464
Normal
0.4
515
Tumor
0.4
416
Normal
0.4
425
Tumor
0.4
912
Normal
0.4
195
Tumor
0.4
187
Tumor
0.4
214
Normal
0.4
148
Normal
0.3
873
Tumor
0.3
883
Tumor
0.3
964
Normal
0.3
421
Tumor
0.3
285
Tumor
0.3
1043
Tumor
0.3
1042
Normal
0.3
527
Tumor
0.3
874
Normal
0.2
514
Normal
0.2
355
Tumor
0.2
132
Normal
0.2
884
Normal
0.2
126
Normal
0.2
744
Normal
0.2
976
Normal
0.2
224
Normal
0.2
1044
Normal
0.2
364
Normal
0.2
1032
Normal
0.2
196
Normal
0.2
697
Tumor
0.2
415
Tumor
0.2
524
Normal
0.1
447
Tumor
0.1
228
Normal
0.1
956
Normal
0.1
536
Normal
0.1
516
Normal
0.1
968
Normal
0.1
664
Normal
0.1
728
Normal
0.0
954
Normal
0.0
218
Normal
0.0
111
Normal
0.0
456
Normal
0.0
944
Normal
0.0
284
Normal
0.0
868
Normal
0.0
412
Normal
0.0
1046
Normal
0.0
136
Normal
0.0
526
Normal
0.0
914
Normal
0.0
422
Normal
0.0
698
Normal
0.0
146
Normal
0.0
424
Normal
-0.1
666
Normal
-0.1
662
Normal
-0.1
966
Normal
-0.1
428
Normal
-0.1
546
Normal
-0.1
882
Normal
-0.1
188
Normal
-0.1
738
Normal
-0.1
162
Normal
-0.1
356
Normal
-0.1
1045
Tumor
-0.1
938
Normal
-0.1
742
Normal
-0.1
1026
Normal
-0.2
413
Tumor
-0.2
466
Normal
-0.2
123
Tumor
-0.2
213
Tumor
-0.2
138
Normal
-0.2
866
Normal
-0.2
124
Normal
-0.2
1022
Normal
-0.2
448
Normal
-0.2
554
Normal
-0.2
452
Normal
-0.2
952
Normal
-0.2
191
Tumor
-0.3
426
Normal
-0.3
538
Normal
-0.3
953
Tumor
-0.3
112
Tumor
-0.3
185
Tumor
-0.3
513
Tumor
-0.3
328
Normal
-0.3
414
Normal
-0.3
862
Normal
-0.3
1028
Normal
-0.3
222
Normal
-0.4
114
Normal
-0.4
723
Tumor
-0.4
217
Tumor
-0.4
864
Normal
-0.4
468
Normal
-0.4
142
Normal
-0.4
1021
Tumor
-0.4
648
Normal
-0.4
186
Normal
-0.4
171
Tumor
-0.4
127
Tumor
-0.4
172
Normal
-0.4
145
Tumor
-0.5
467
Tumor
-0.5
937
Tumor
-0.5
135
Tumor
-0.5
647
Tumor
-0.5
975
Tumor
-0.6
525
Tumor
-0.6
411
Tumor
-0.6
955
Tumor
-0.6
1025
Tumor
-0.6
957
Tumor
-0.6
863
Tumor
-0.6
1031
Tumor
-0.7
221
Tumor
-0.7
528
Normal
-0.7
724
Normal
-0.7
534
Normal
-0.8
128
Normal
-0.8
141
Tumor
-0.8
913
Tumor
-0.8
147
Tumor
-0.9
327
Tumor
-0.9
861
Tumor
-0.9
137
Tumor
-0.9
465
Tumor
-0.9
911
Tumor
-0.9
161
Tumor
-1.0
227
Tumor
-1.0
537
Tumor
-1.0
451
Tumor
-1.0
423
Tumor
-1.0
427
Tumor
-1.0
1027
Tumor
-1.0
661
Tumor
-1.1
363
Tumor
-1.1
741
Tumor
-1.1
865
Tumor
-1.1
663
Tumor
-1.3
223
Tumor
-1.6
553
Tumor
-1.7
1041
Tumor
-1.9
533
Tumor
-2.1
471
Tumor
N/A
351
Tumor
N/A
472
Normal
N/A
231
Tumor
N/A
352
Normal
N/A
473
Tumor
N/A
232
Normal
N/A
353
Tumor
N/A
474
Normal
N/A
354
Normal
N/A
477
Tumor
N/A
357
Tumor
N/A
478
Normal
N/A
358
Normal
N/A
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
481
Tumor
N/A
361
Tumor
N/A
482
Normal
N/A
362
Normal
N/A
483
Tumor
N/A
484
Normal
N/A
365
Tumor
N/A
366
Normal
N/A
487
Tumor
N/A
367
Tumor
N/A
488
Normal
N/A
368
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
491
Tumor
N/A
492
Normal
N/A
493
Tumor
N/A
494
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
497
Tumor
N/A
498
Normal
N/A
257
Tumor
N/A
258
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
817
Tumor
N/A
818
Normal
N/A
261
Tumor
N/A
262
Normal
N/A
383
Tumor
N/A
384
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
387
Tumor
N/A
267
Tumor
N/A
388
Normal
N/A
268
Normal
N/A
823
Tumor
N/A
824
Normal
N/A
391
Tumor
N/A
271
Tumor
N/A
392
Normal
N/A
272
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
277
Tumor
N/A
1016
Normal
N/A
278
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
1013
Tumor
N/A
713
Tumor
N/A
714
Normal
N/A
715
Tumor
N/A
716
Normal
N/A
721
Tumor
N/A
722
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
851
Tumor
N/A
852
Normal
N/A
977
Tumor
N/A
615
Tumor
N/A
857
Tumor
N/A
978
Normal
N/A
616
Normal
N/A
858
Normal
N/A
617
Tumor
N/A
618
Normal
N/A
981
Tumor
N/A
982
Normal
N/A
983
Tumor
N/A
984
Normal
N/A
745
Tumor
N/A
746
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
755
Tumor
N/A
635
Tumor
N/A
756
Normal
N/A
636
Normal
N/A
641
Tumor
N/A
642
Normal
N/A
777
Tumor
N/A
778
Normal
N/A
785
Tumor
N/A
786
Normal
N/A
431
Tumor
N/A
311
Tumor
N/A
432
Normal
N/A
312
Normal
N/A
433
Tumor
N/A
313
Tumor
N/A
434
Normal
N/A
314
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
443
Tumor
N/A
564
Normal
N/A
685
Tumor
N/A
444
Normal
N/A
686
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
567
Tumor
N/A
568
Normal
N/A
571
Tumor
N/A
572
Normal
N/A
331
Tumor
N/A
573
Tumor
N/A
332
Normal
N/A
574
Normal
N/A
695
Tumor
N/A
696
Normal
N/A
461
Tumor
N/A
341
Tumor
N/A
462
Normal
N/A
342
Normal
N/A
343
Tumor
N/A
344
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
