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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
421.1
nTPM
HPA Brain:
402.2
nTPM
GTEx:
421.1
nTPM
FANTOM5:
37.3
Scaled Tags Per Million
Pig:
921.6
nTPM
Mouse:
2132.8
nTPM
Allen mouse:
26.4
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
402.2
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 302.6
2219
Male, age 76, both hemispheres
561.2
2019
Male, age 18, unknown
388.1
1827
Male, age 72, unknown
380.1
2411
Female, age 72, unknown
327.7
2828
Female, age 72, unknown
254.4
1833
Male, age 53, unknown
246.9
1830
Male, age 51, unknown
234.6
2666
Male, age 74, left hemisphere
220.8
1870
Female, age 42, unknown
217.4
2586
Male, age 75, left hemisphere
194.4
Dorsal raphe nucleus nTPM: 241.2
2298
Female, age 72, unknown
318.3
1828
Male, age 53, unknown
272.7
2750
Male, age 76, both hemispheres
243.6
2047
Male, age 72, unknown
200.7
2016
Female, age 72, unknown
170.5
Inferior colliculus nTPM: 391.1
2097
Female, age 72, unknown
545.4
1848
Female, age 42, unknown
398.2
1890
Male, age 53, unknown
313.4
2849
Male, age 72, unknown
307.2
Median raphe nucleus nTPM: 279.8
2220
Male, age 76, midline
279.8
Periaquaductal grey, anterior nTPM: 300.7
2502
Female, age 75, unknown
347.4
1947
Male, age 18, unknown
305.1
1795
Male, age 51, unknown
249.4
Periaquaductal grey, dorsal nTPM: 215.0
2464
Female, age 72, unknown
243.1
1831
Male, age 72, unknown
230.2
1840
Male, age 53, unknown
196.6
2850
Male, age 76, both hemispheres
190.1
Periaquaductal grey, lateral nTPM: 168.9
2140
Male, age 76, both hemispheres
171.9
2272
Male, age 74, both hemispheres
167.6
2053
Male, age 18, unknown
167.3
Pretectal area nTPM: 378.2
1817
Female, age 42, unknown
589.6
1944
Female, age 72, unknown
580.2
2007
Male, age 72, unknown
577.2
1816
Male, age 51, unknown
568.9
1815
Male, age 53, unknown
433.7
2667
Female, age 75, unknown
342.5
2224
Female, age 72, unknown
257.8
2316
Male, age 76, right hemisphere
238.1
2407
Male, age 75, both hemispheres
226.6
2825
Male, age 18, unknown
207.9
2273
Male, age 74, both hemispheres
137.7
Red nucleus nTPM: 269.3
1821
Female, age 72, unknown
413.1
2785
Male, age 18, unknown
380.2
1954
Female, age 42, unknown
321.3
2823
Male, age 76, right hemisphere
300.1
2584
Male, age 75, left hemisphere
282.4
1865
Male, age 51, unknown
255.0
2227
Male, age 72, unknown
246.3
2769
Male, age 72, unknown
244.2
2503
Female, age 72, unknown
227.0
1904
Male, age 53, unknown
212.6
2725
Female, age 75, unknown
203.9
2588
Male, age 74, left hemisphere
145.1
Substantia nigra nTPM: 402.2
1941
Male, age 53, unknown
788.4
1889
Female, age 72, unknown
566.0
1916
Female, age 42, unknown
527.7
2665
Male, age 74, both hemispheres
389.7
2409
Female, age 72, unknown
367.6
2241
Male, age 72, unknown
367.3
1851
Male, age 51, unknown
352.1
2699
Male, age 18, unknown
261.6
2590
Female, age 75, unknown
216.5
2583
Male, age 75, right hemisphere
185.2
Superior colliculus nTPM: 317.4
2668
Female, age 75, unknown
532.7
1895
Male, age 76, right hemisphere
482.4
2087
Female, age 72, unknown
477.1
2261
Male, age 18, unknown
331.2
1796
Male, age 53, unknown
322.5
1839
Male, age 51, unknown
285.4
1913
Female, age 42, unknown
223.1
1995
Male, age 72, unknown
194.5
2664
Male, age 75, both hemispheres
165.7
2587
Male, age 74, left hemisphere
159.3
Ventral tegmental area nTPM: 330.7
2218
Male, age 76, both hemispheres
495.7
2410
Female, age 72, unknown
433.1
1915
Female, age 42, unknown
349.2
1942
Male, age 51, unknown
292.4
2223
Female, age 72, unknown
249.5
2021
Male, age 53, unknown
164.6
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
421.1
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 421.1
Samples: 139
Max nTPM: 4530.6
Min nTPM: 10.2
Std nTPM: 561.1
Median nTPM: 237.4
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
4530.6
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
3032.9
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
2357.1
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
1498.4
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
1471.9
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
1374.3
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
1216.6
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
1183.2
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
1120.6
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
1064.1
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
1019.6
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
980.0
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
950.8
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
915.5
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
872.5
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
869.7
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
865.7
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
794.5
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
787.7
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
774.8
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
774.4
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
765.6
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
764.5
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
742.6
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
723.6
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
719.8
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
707.1
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
698.4
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
666.9
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
639.8
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
615.7
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
599.3
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
586.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
570.1
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
567.0
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
553.9
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
552.5
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
537.0
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
528.7
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
514.1
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
510.6
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
503.1
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
475.4
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
474.2
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
472.6
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
465.2
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
464.0
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
450.6
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
450.2
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
428.8
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
418.4
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
399.0
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
388.5
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
383.6
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
382.8
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
370.5
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
368.6
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
365.8
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
348.3
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
346.0
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
335.1
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
331.4
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
317.0
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
309.4
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
305.9
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
264.4
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
257.0
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
244.2
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
241.7
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
237.4
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
236.8
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
229.1
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
206.7
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
199.0
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
187.0
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
183.0
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
181.4
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
179.3
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
178.0
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
163.2
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
156.7
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
153.7
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
151.6
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
147.5
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
147.3
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
138.9
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
136.3
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
133.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
130.6
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
129.1
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
128.5
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
126.6
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
125.0
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
120.0
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
117.8
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
115.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
112.8
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
112.2
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
101.7
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
100.2
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
93.6
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
91.9
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
89.5
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
87.6
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
86.8
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
83.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
82.3
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
80.7
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
77.2
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
76.5
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
75.8
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
72.9
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
70.3
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
67.6
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
63.8
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
62.9
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
62.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
60.6
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
59.3
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
57.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
56.8
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
56.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
53.5
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
53.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
47.2
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
43.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
42.7
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
39.5
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
36.6
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
36.5
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
34.7
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
31.3
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
31.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
29.3
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
29.0
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
21.6
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
16.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
15.1
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
10.2
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
2132.8
Mouse sample
Sample description
nTPM
Midbrain nTPM: 2132.8
Samples: 4
Max nTPM: 2229.8
Min nTPM: 2040.9
Sample A
Male
2095.8
Sample B
Male
2229.8
Sample C
Female
2164.7
Sample D
Female
2040.9
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.