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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
948.1
nTPM
HPA Brain:
1293.7
nTPM
GTEx:
948.1
nTPM
FANTOM5:
1703.8
Scaled Tags Per Million
Pig:
1484.6
nTPM
Mouse:
2198.6
nTPM
Allen mouse:
30.5
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1293.7
Sample id
Sample description
nTPM
Hippocampus nTPM: 844.0
1898
Male, age 80, left hemisphere
1286.3
2621
Female, age 67, right hemisphere
1077.3
2148
Female, age 91, left hemisphere
845.1
1855
Male, age 76, left hemisphere
814.4
1911
Female, age 85, right hemisphere
649.3
2529
Female, age 94, left hemisphere
391.8
Dentate gyrus nTPM: 967.9
1927
Female, age 91, both hemispheres
1590.4
2246
Female, age 85, both hemispheres
902.4
2010
Male, age 76, both hemispheres
868.3
2530
Female, age 94, left hemisphere
868.1
2531
Female, age 67, both hemispheres
829.5
2528
Male, age 74, both hemispheres
748.9
Entorhinal gyrus nTPM: 829.1
2613
Female, age 94, left hemisphere
1116.3
1938
Female, age 85, left hemisphere
1103.1
2764
Male, age 80, right hemisphere
929.3
1787
Male, age 76, left hemisphere
756.2
2686
Male, age 75, right hemisphere
657.9
2117
Female, age 91, right hemisphere
412.0
Hippocampus, CA1 nTPM: 1152.6
2749
Male, age 80, left hemisphere
2039.4
1873
Female, age 85, both hemispheres
1090.5
2527
Male, age 74, both hemispheres
1056.0
2082
Female, age 91, right hemisphere
812.9
2045
Male, age 76, both hemispheres
764.0
Hippocampus, CA2 nTPM: 983.9
1892
Male, age 76, both hemispheres
1479.9
1963
Male, age 80, left hemisphere
1349.4
2249
Male, age 74, both hemispheres
827.2
1940
Female, age 85, left hemisphere
778.9
2113
Female, age 91, right hemisphere
744.8
2437
Female, age 94, left hemisphere
723.3
Hippocampus, CA3 nTPM: 1005.4
2137
Male, age 80, left hemisphere
1557.4
1867
Male, age 76, both hemispheres
1041.0
2436
Male, age 74, both hemispheres
978.0
2620
Female, age 94, left hemisphere
976.0
2861
Female, age 67, both hemispheres
759.4
1891
Female, age 85, both hemispheres
720.5
Parahippocampal cortex nTPM: 960.3
1990
Female, age 91, right hemisphere
1275.9
1850
Male, age 80, both hemispheres
1230.0
2245
Female, age 91, both hemispheres
1229.9
2693
Female, age 94, both hemispheres
996.4
2250
Female, age 67, right hemisphere
993.0
1933
Female, age 85, both hemispheres
955.1
2532
Female, age 72, left hemisphere
865.4
2622
Female, age 67, right hemisphere
820.3
2018
Male, age 76, both hemispheres
672.5
2692
Male, age 74, both hemispheres
564.4
Perirhinal gyrus nTPM: 1293.7
1847
Female, age 91, left hemisphere
1867.3
2521
Female, age 94, right hemisphere
1483.0
1794
Male, age 80, right hemisphere
1212.1
1841
Female, age 85, right hemisphere
1169.5
2848
Male, age 76, right hemisphere
736.4
Subiculum nTPM: 723.7
1977
Female, age 85, both hemispheres
969.0
1901
Male, age 80, both hemispheres
961.3
2438
Female, age 94, left hemisphere
813.9
2619
Male, age 74, both hemispheres
622.3
2042
Male, age 76, both hemispheres
509.8
2729
Female, age 91, right hemisphere
465.9
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
948.1
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 948.1
Samples: 197
Max nTPM: 3054.8
Min nTPM: 42.8
Std nTPM: 680.1
Median nTPM: 865.8
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
3054.8
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
2992.1
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
2793.6
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
2478.5
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
2466.7
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
2302.4
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
2215.8
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
2211.4
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
2195.5
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
2155.6
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
2154.8
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
2108.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
2105.3
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
2100.4
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
2017.8
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
2006.5
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
1990.2
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
1978.6
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
1941.6
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
1938.1
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
1930.0
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
1905.3
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
1865.5
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
1847.7
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
1813.2
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
1774.7
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
1769.1
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
1758.0
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
1741.5
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
1738.8
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
1727.7
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
1723.1
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
1707.1
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
1705.7
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
1647.4
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
1616.8
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
1599.5
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
1594.3
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
1539.0
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
1529.9
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
1523.5
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
1518.6
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
1476.7
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
1475.9
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
1467.0
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
1457.7
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
1423.6
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
1421.8
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
1408.7
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
1399.5
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
1393.3
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
1388.2
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
1387.9
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
1358.6
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
1342.7
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
1337.8
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
1313.4
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
1312.9
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
1294.1
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
1280.6
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
1257.1
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
1255.8
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
1236.4
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
1235.9
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
1189.1
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
1187.8
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
1187.1
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
1181.8
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
1155.5
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
1152.5
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
1129.4
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
1126.0
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
1124.0
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
1123.5
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
1119.8
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
1111.1
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
1106.7
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
1077.4
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
1073.1
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
1072.6
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
1069.7
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
1053.7
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
1032.4
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
1025.3
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
1013.6
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
993.7
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
986.0
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
978.2
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
972.2
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
968.6
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
960.5
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
958.5
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
944.3
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
938.4
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
938.0
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
903.5
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
885.5
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
883.4
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
865.8
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
862.4
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
854.2
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
838.8
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
832.2
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
828.3
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
824.4
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
817.8
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
792.0
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
791.7
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
767.2
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
766.9
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
760.1
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
748.9
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
725.2
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
712.6
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
702.0
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
691.7
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
681.7
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
659.1
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
631.2
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
628.7
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
600.0
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
571.1
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
569.2
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
560.4
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
555.6
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
551.8
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
532.6
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
524.7
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
502.0
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
499.3
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
493.9
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
491.1
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
482.6
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
467.8
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
452.5
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
448.4
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
440.0
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
427.4
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
425.2
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
424.2
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
418.7
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
418.1
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
380.2
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
361.9
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
347.5
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
329.4
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
324.9
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
321.9
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
316.1
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
316.0
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
307.1
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
301.7
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
300.3
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
297.4
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
296.4
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
284.3
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
282.9
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
278.6
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
267.0
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
265.5
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
263.7
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
263.1
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
262.5
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
237.5
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
229.0
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
198.6
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
195.9
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
192.3
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
181.2
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
169.5
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
165.5
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
160.9
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
155.5
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
150.7
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
148.2
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
147.7
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
145.2
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
144.5
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
140.8
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
129.4
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
125.3
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
115.4
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
114.4
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
113.5
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
106.5
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
103.3
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
100.7
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
100.0
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
93.9
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
93.3
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
92.4
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
90.4
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
89.7
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
60.6
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
55.7
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
48.0
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
42.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
2198.6
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 2198.6
Samples: 4
Max nTPM: 2589.9
Min nTPM: 1978.9
Sample A
Male
2244.4
Sample B
Male
2589.9
Sample C
Female
1981.2
Sample D
Female
1978.9
Hippocampal formation nTPM: 2031.1
Samples: 4
Max nTPM: 2238.1
Min nTPM: 1823.5
Sample A
Male
2238.1
Sample B
Male
1991.3
Sample C
Female
2071.3
Sample D
Female
1823.5
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.