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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ERAL1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
33.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
132.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
105.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
99.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
82.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
74.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
73.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
71.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
64.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
63.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
63.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
63.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
62.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
62.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
62.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
60.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
59.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
58.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
57.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
57.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
57.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
57.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
57.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
56.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
55.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
54.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
54.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
54.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
53.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
53.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
52.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
52.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
52.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
52.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
51.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
51.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
51.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
51.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
50.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
50.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
50.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
50.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
49.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
49.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
49.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
49.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
48.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
48.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
48.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
48.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
48.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
48.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
48.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
48.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
48.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
47.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
47.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
46.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
46.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
46.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
46.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
46.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
45.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
45.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
45.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
45.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
44.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
44.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
44.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
44.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
44.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
43.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
43.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
43.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
43.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
43.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
42.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
42.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
42.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
42.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
42.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
42.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
42.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
41.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
41.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
41.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
41.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
40.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
40.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
40.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
40.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
40.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
40.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
39.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
39.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
39.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
39.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
39.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
39.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
39.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
38.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
38.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
38.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
38.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
38.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
38.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
38.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
37.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
37.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
37.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
37.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
37.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
37.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
37.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
37.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
37.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
37.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
37.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
36.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
36.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
36.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
36.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
36.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
35.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
35.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
35.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
35.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
35.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
35.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
34.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
34.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
34.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
34.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
34.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
34.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
34.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
34.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
34.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
34.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
34.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
34.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
34.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
33.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
33.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
33.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
33.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
33.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
33.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
33.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
33.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
33.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
33.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
33.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
33.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
33.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
33.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
33.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
32.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
32.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
32.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
32.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
32.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
32.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
32.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
32.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
32.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
31.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
31.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
31.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
31.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
31.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
31.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
31.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
31.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
31.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
31.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
31.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
31.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
31.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
31.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
31.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
30.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
30.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
30.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
30.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
30.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
30.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
30.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
30.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
30.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
30.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
30.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
29.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
29.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
29.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
29.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
29.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
29.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
29.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
29.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
29.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
29.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
29.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
29.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
29.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
28.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
28.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
28.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
28.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
28.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
28.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
28.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
27.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
27.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
27.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
27.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
27.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
27.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
27.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
27.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
27.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
27.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
27.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
27.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
27.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
27.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
27.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
27.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
26.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
26.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
26.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
26.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
26.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
26.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
26.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
26.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
26.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
26.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
26.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
26.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
26.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
26.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
26.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
26.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
26.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
26.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
25.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
25.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
25.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
25.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
25.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
25.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
25.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
25.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
25.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
25.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
25.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
25.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
25.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
25.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
25.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
25.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
24.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
24.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
24.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
24.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
24.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
24.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
24.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
24.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
24.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
24.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
24.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
24.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
24.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
24.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
24.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
24.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
24.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
23.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
23.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
23.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
23.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
23.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
23.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
23.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
23.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
23.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
23.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
23.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
23.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
22.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
22.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
22.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
22.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
22.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
22.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
22.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
22.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
22.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
22.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
22.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
22.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
21.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
21.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
21.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
21.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
21.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
21.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
21.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
21.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
21.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
21.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
21.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
21.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
21.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
21.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
21.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
21.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
20.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
20.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
20.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
20.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
20.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
20.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
20.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
20.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
20.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
20.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
20.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
20.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
20.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
20.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
20.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
20.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
19.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
19.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
19.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
19.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
19.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
19.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
19.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
18.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
18.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
18.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
18.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
18.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
18.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
18.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
18.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
18.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
17.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
17.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
17.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
16.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
16.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
15.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
15.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
14.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
14.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
14.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
12.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ERAL1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
27.5
Number of samples
231
Samples
Sample
Description
TPM
DO50791
0 years, female, NA, stage:1, dead, 480 days
111.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
62.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
59.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
59.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
58.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
57.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
55.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
54.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
54.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
54.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
52.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
51.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
51.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
50.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
49.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
48.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
48.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
47.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
46.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
44.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
43.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
42.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
42.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
42.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
41.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
40.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
40.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
40.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
40.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
40.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
39.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
39.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
39.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
39.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
38.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
38.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
38.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
37.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
37.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
37.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
37.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
37.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
36.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
36.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
35.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
35.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
35.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
34.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
34.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
34.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
34.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
34.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
34.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
33.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
33.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
32.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
32.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
32.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
32.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
31.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
31.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
31.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
31.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
31.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
31.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
31.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
30.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
30.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
30.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
30.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
30.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
30.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
30.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
29.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
29.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
29.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
29.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
29.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
29.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
29.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
29.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
29.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
29.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
28.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
28.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
28.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
28.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
28.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
27.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
27.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
27.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
27.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
27.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
27.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
27.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
27.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
27.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
27.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
27.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
27.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
26.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
26.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
26.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
26.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
26.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
26.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
25.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
25.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
25.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
25.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
25.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
25.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
25.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
25.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
25.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
24.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
24.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
24.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
24.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
24.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
24.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
24.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
24.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
24.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
24.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
24.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
24.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
24.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
23.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
23.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
23.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
23.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
23.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
22.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
22.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
22.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
22.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
21.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
21.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
21.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
21.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
21.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
21.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
21.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
21.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
21.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
21.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
21.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
20.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
20.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
20.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
20.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
20.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
20.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
20.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
20.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
20.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
20.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
20.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
20.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
20.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
20.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
20.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
20.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
20.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
20.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
19.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
19.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
19.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
19.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
19.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
19.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
19.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
19.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
19.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
19.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
19.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
18.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
18.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
18.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
18.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
18.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
18.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
18.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
18.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
17.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
17.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
17.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
17.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
17.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
17.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
17.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
17.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
17.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
17.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
17.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
17.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
17.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
17.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
17.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
16.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
16.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
16.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
16.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
16.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
16.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
16.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
16.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
15.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
15.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
15.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
15.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
15.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
15.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
15.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
14.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
14.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
14.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
14.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
14.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
14.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
14.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
14.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
13.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
12.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
12.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
11.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
11.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
11.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
10.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
231
Tumor
1.7
533
Tumor
1.6
435
Tumor
1.4
925
Tumor
1.3
537
Tumor
1.3
865
Tumor
1.1
525
Tumor
1.1
967
Tumor
1.0
571
Tumor
1.0
351
Tumor
1.0
953
Tumor
0.9
497
Tumor
0.8
171
Tumor
0.8
391
Tumor
0.8
423
Tumor
0.7
965
Tumor
0.7
473
Tumor
0.7
491
Tumor
0.7
477
Tumor
0.7
353
Tumor
0.7
671
Tumor
0.7
127
Tumor
0.7
1013
Tumor
0.7
743
Tumor
0.7
367
Tumor
0.6
573
Tumor
0.6
355
Tumor
0.6
724
Normal
0.6
663
Tumor
0.6
411
Tumor
0.6
741
Tumor
0.6
535
Tumor
0.6
427
Tumor
0.6
1041
Tumor
0.6
883
Tumor
0.6
387
Tumor
0.5
361
Tumor
0.5
665
Tumor
0.5
357
Tumor
0.5
517
Tumor
0.4
433
Tumor
0.4
465
Tumor
0.4
187
Tumor
0.4
267
Tumor
0.4
685
Tumor
0.4
1021
Tumor
0.4
745
Tumor
0.4
363
Tumor
0.3
977
Tumor
0.3
483
Tumor
0.3
722
Normal
0.3
227
Tumor
0.3
557
Tumor
0.3
451
Tumor
0.3
161
Tumor
0.3
147
Tumor
0.3
923
Tumor
0.3
983
Tumor
0.3
185
Tumor
0.3
957
Tumor
0.2
123
Tumor
0.2
385
Tumor
0.2
713
Tumor
0.2
331
Tumor
0.2
861
Tumor
0.2
356
Normal
0.2
431
Tumor
0.2
467
Tumor
0.2
195
Tumor
0.2
393
Tumor
0.2
964
Normal
0.2
257
Tumor
0.2
714
Normal
0.2
567
Tumor
0.2
661
Tumor
0.2
137
Tumor
0.2
635
Tumor
0.2
213
Tumor
0.2
981
Tumor
0.2
696
Normal
0.2
493
Tumor
0.1
627
Tumor
0.1
364
Normal
0.1
375
Tumor
0.1
343
Tumor
0.1
413
Tumor
0.1
191
Tumor
0.1
145
Tumor
0.1
383
Tumor
0.1
695
Tumor
0.1
715
Tumor
0.1
568
Normal
0.1
721
Tumor
0.1
395
Tumor
0.1
617
Tumor
0.1
716
Normal
0.1
341
Tumor
0.0
642
Normal
0.0
352
Normal
0.0
937
Tumor
0.0
135
Tumor
0.0
755
Tumor
0.0
463
Tumor
0.0
416
Normal
0.0
697
Tumor
0.0
277
Tumor
0.0
877
Tumor
0.0
471
Tumor
0.0
368
Normal
0.0
982
Normal
0.0
1025
Tumor
0.0
647
Tumor
0.0
911
Tumor
0.0
641
Tumor
0.0
432
Normal
0.0
221
Tumor
0.0
527
Tumor
0.0
444
Normal
0.0
412
Normal
-0.1
963
Tumor
-0.1
131
Tumor
-0.1
426
Normal
-0.1
777
Tumor
-0.1
112
Tumor
-0.1
1032
Normal
-0.1
211
Tumor
-0.1
328
Normal
-0.1
217
Tumor
-0.1
553
Tumor
-0.1
951
Tumor
-0.1
956
Normal
-0.1
615
Tumor
-0.1
851
Tumor
-0.1
424
Normal
-0.1
954
Normal
-0.1
232
Normal
-0.1
1042
Normal
-0.1
968
Normal
-0.2
428
Normal
-0.2
415
Tumor
-0.2
944
Normal
-0.2
344
Normal
-0.2
443
Tumor
-0.2
952
Normal
-0.2
285
Tumor
-0.2
142
Normal
-0.2
514
Normal
-0.2
446
Normal
-0.2
628
Normal
-0.2
132
Normal
-0.2
1016
Normal
-0.2
857
Tumor
-0.2
1015
Tumor
-0.2
867
Tumor
-0.2
421
Tumor
-0.2
113
Tumor
-0.2
447
Tumor
-0.2
978
Normal
-0.2
228
Normal
-0.2
616
Normal
-0.2
436
Normal
-0.2
192
Normal
-0.2
1014
Normal
-0.2
482
Normal
-0.2
312
Normal
-0.2
278
Normal
-0.2
146
Normal
-0.2
984
Normal
-0.2
914
Normal
-0.2
468
Normal
-0.2
314
Normal
-0.2
618
Normal
-0.2
487
Tumor
-0.2
1031
Tumor
-0.2
813
Tumor
-0.2
466
Normal
-0.2
864
Normal
-0.2
943
Tumor
-0.2
445
Tumor
-0.2
666
Normal
-0.2
422
Normal
-0.3
414
Normal
-0.3
1045
Tumor
-0.3
478
Normal
-0.3
297
Tumor
-0.3
261
Tumor
-0.3
558
Normal
-0.3
452
Normal
-0.3
523
Tumor
-0.3
128
Normal
-0.3
913
Tumor
-0.3
332
Normal
-0.3
513
Tumor
-0.3
528
Normal
-0.3
388
Normal
-0.3
534
Normal
-0.3
858
Normal
-0.3
365
Tumor
-0.3
384
Normal
-0.3
327
Tumor
-0.3
186
Normal
-0.3
196
Normal
-0.3
462
Normal
-0.3
785
Tumor
-0.3
464
Normal
-0.3
472
Normal
-0.3
823
Tumor
-0.3
1022
Normal
-0.3
686
Normal
-0.3
354
Normal
-0.3
394
Normal
-0.3
224
Normal
-0.3
222
Normal
-0.3
636
Normal
-0.3
915
Tumor
-0.3
1028
Normal
-0.3
572
Normal
-0.3
141
Tumor
-0.3
434
Normal
-0.3
136
Normal
-0.3
574
Normal
-0.4
546
Normal
-0.4
218
Normal
-0.4
456
Normal
-0.4
738
Normal
-0.4
1044
Normal
-0.4
884
Normal
-0.4
938
Normal
-0.4
976
Normal
-0.4
376
Normal
-0.4
746
Normal
-0.4
214
Normal
-0.4
1027
Tumor
-0.4
284
Normal
-0.4
138
Normal
-0.4
223
Tumor
-0.4
358
Normal
-0.4
1046
Normal
-0.4
272
Normal
-0.4
912
Normal
-0.4
498
Normal
-0.4
518
Normal
-0.4
311
Tumor
-0.4
554
Normal
-0.4
342
Normal
-0.4
162
Normal
-0.4
396
Normal
-0.4
386
Normal
-0.4
484
Normal
-0.4
148
Normal
-0.4
756
Normal
-0.4
488
Normal
-0.4
188
Normal
-0.4
815
Tumor
-0.4
481
Tumor
-0.4
298
Normal
-0.4
286
Normal
-0.4
698
Normal
-0.4
727
Tumor
-0.4
958
Normal
-0.4
817
Tumor
-0.4
313
Tumor
-0.4
1043
Tumor
-0.4
723
Tumor
-0.4
114
Normal
-0.4
392
Normal
-0.4
366
Normal
-0.4
526
Normal
-0.4
126
Normal
-0.4
742
Normal
-0.4
778
Normal
-0.5
564
Normal
-0.5
125
Tumor
-0.5
474
Normal
-0.5
1026
Normal
-0.5
881
Tumor
-0.5
362
Normal
-0.5
816
Normal
-0.5
494
Normal
-0.5
455
Tumor
-0.5
172
Normal
-0.5
268
Normal
-0.5
425
Tumor
-0.5
824
Normal
-0.5
874
Normal
-0.5
814
Normal
-0.5
212
Normal
-0.5
516
Normal
-0.5
818
Normal
-0.5
124
Normal
-0.5
866
Normal
-0.5
111
Normal
-0.5
448
Normal
-0.6
258
Normal
-0.6
524
Normal
-0.6
662
Normal
-0.6
672
Normal
-0.6
536
Normal
-0.6
271
Tumor
-0.6
926
Normal
-0.6
283
Tumor
-0.6
461
Tumor
-0.6
852
Normal
-0.6
882
Normal
-0.6
262
Normal
-0.6
728
Normal
-0.6
492
Normal
-0.6
868
Normal
-0.6
862
Normal
-0.6
515
Tumor
-0.6
538
Normal
-0.6
786
Normal
-0.6
878
Normal
-0.7
863
Tumor
-0.7
545
Tumor
-0.7
924
Normal
-0.7
737
Tumor
-0.7
563
Tumor
-0.7
916
Normal
-0.7
975
Tumor
-0.7
664
Normal
-0.8
955
Tumor
-0.8
922
Normal
-0.8
648
Normal
-0.8
917
Tumor
-0.9
966
Normal
-0.9
873
Tumor
-0.9
744
Normal
-0.9
918
Normal
-1.0
921
Tumor
-1.1
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
