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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
XAF1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
87.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
77.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
66.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
58.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
50.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
42.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
38.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
36.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
33.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
33.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
31.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
29.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
28.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
28.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
28.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
27.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
27.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
27.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
26.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
26.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
25.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
25.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
25.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
23.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
23.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
22.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
22.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
22.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
22.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
21.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
21.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
21.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
20.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
20.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
20.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
19.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
19.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
19.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
19.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
18.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
18.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
18.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
18.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
17.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
17.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
17.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
17.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
16.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
16.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
16.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
16.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
16.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
16.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
16.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
16.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
15.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
15.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
15.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
15.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
15.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
15.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
15.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
14.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
14.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
14.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
14.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
14.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
14.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
14.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
14.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
14.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
14.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
14.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
13.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
13.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
13.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
13.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
13.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
12.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
12.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
12.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
12.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
12.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
12.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
12.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
12.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
12.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
12.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
12.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
12.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
11.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
11.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
11.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
11.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
11.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
11.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
11.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
11.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
11.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
11.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
11.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
10.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
10.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
10.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
10.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
10.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
10.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
10.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
10.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
10.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
10.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
10.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
10.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
10.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
10.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
10.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
10.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
9.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
9.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
9.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
9.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
9.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
9.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
8.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
8.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
8.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
8.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
8.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
8.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
8.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
8.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
7.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
7.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
7.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
7.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
7.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
7.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
7.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
7.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
6.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
6.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
6.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
6.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
5.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
5.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
5.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
5.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
5.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
5.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
5.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
5.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
5.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
4.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
4.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
4.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
4.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
4.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
4.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
4.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
4.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
4.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
3.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
3.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
3.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
3.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
3.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
3.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
3.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
3.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
3.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
2.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
2.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
2.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
2.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
2.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
2.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
2.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
2.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
2.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
1.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
1.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
1.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
1.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
1.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
1.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
1.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
XAF1 is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
41.4
Number of samples
231
Samples
Sample
Description
TPM
DO45301
0 years, male, NA, stage:2, dead, 1440 days
365.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
350.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
226.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
218.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
217.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
214.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
211.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
191.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
186.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
176.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
137.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
132.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
127.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
123.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
116.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
116.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
115.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
110.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
104.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
99.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
95.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
95.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
91.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
91.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
84.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
82.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
79.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
77.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
73.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
72.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
71.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
70.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
70.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
70.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
69.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
69.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
68.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
66.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
63.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
63.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
63.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
62.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
62.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
59.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
57.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
55.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
54.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
54.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
54.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
54.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
53.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
53.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
52.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
51.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
50.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
50.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
49.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
48.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
48.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
48.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
45.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
43.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
43.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
43.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
41.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
40.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
40.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
40.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
40.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
39.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
39.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
38.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
38.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
38.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
38.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
37.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
37.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
37.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
36.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
36.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
35.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
35.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
35.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
34.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
34.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
33.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
32.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
32.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
31.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
31.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
30.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
30.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
30.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
30.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
29.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
29.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
29.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
28.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
28.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
28.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
27.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
27.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
27.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
27.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
26.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
26.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
26.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
25.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
25.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
25.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
25.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
25.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
25.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
25.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
25.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
24.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
24.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
24.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
24.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
24.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
24.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
24.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
23.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
23.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
22.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
22.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
22.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
22.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
22.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
22.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
22.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
22.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
22.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
21.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
21.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
20.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
20.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
19.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
19.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
19.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
18.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
18.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
18.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
18.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
18.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
18.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
17.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
17.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
17.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
17.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
16.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
16.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
16.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
16.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
16.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
16.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
16.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
16.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
15.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
15.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
15.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
15.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
15.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
15.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
15.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
14.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
14.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
14.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
14.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
13.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
13.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
13.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
13.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
13.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
13.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
13.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
13.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
12.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
12.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
12.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
12.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
11.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
11.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
11.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
11.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
11.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
11.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
10.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
10.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
10.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
10.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
10.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
9.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
9.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
9.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
8.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
8.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
8.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
8.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
7.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
7.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
7.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
6.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
5.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
4.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
4.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
3.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
3.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
3.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
2.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
2.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
1.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
1.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
955
Tumor
2.2
327
Tumor
1.8
1043
Tumor
1.7
113
Tumor
1.7
536
Normal
1.5
261
Tumor
1.5
1015
Tumor
1.3
416
Normal
1.3
262
Normal
1.3
554
Normal
1.2
524
Normal
1.2
415
Tumor
1.1
218
Normal
1.1
915
Tumor
1.1
977
Tumor
1.1
523
Tumor
1.0
451
Tumor
1.0
926
Normal
1.0
553
Tumor
1.0
851
Tumor
1.0
937
Tumor
0.9
956
Normal
0.9
966
Normal
0.9
964
Normal
0.9
916
Normal
0.9
921
Tumor
0.9
224
Normal
0.8
217
Tumor
0.8
344
Normal
0.8
865
Tumor
0.8
557
Tumor
0.8
558
Normal
0.8
1028
Normal
0.7
696
Normal
0.7
311
Tumor
0.7
364
Normal
0.7
1027
Tumor
0.7
492
Normal
0.7
814
Normal
0.7
448
Normal
0.7
873
Tumor
0.7
816
Normal
0.7
515
Tumor
0.7
721
Tumor
0.7
925
Tumor
0.6
357
Tumor
0.6
716
Normal
0.6
866
Normal
0.6
434
Normal
0.6
368
Normal
0.6
358
Normal
0.6
1044
Normal
0.6
858
Normal
0.6
862
Normal
0.6
957
Tumor
0.6
978
Normal
0.6
498
Normal
0.6
211
Tumor
0.6
488
Normal
0.6
778
Normal
0.6
518
Normal
0.5
467
Tumor
0.5
755
Tumor
0.5
352
Normal
0.5
952
Normal
0.5
958
Normal
0.5
924
Normal
0.5
538
Normal
0.5
984
Normal
0.5
343
Tumor
0.5
857
Tumor
0.5
737
Tumor
0.5
861
Tumor
0.4
142
Normal
0.4
213
Tumor
0.4
286
Normal
0.4
981
Tumor
0.4
852
Normal
0.4
715
Tumor
0.4
574
Normal
0.4
883
Tumor
0.4
396
Normal
0.4
214
Normal
0.4
722
Normal
0.4
494
Normal
0.4
918
Normal
0.4
221
Tumor
0.4
662
Normal
0.4
447
Tumor
0.3
484
Normal
0.3
628
Normal
0.3
124
Normal
0.3
355
Tumor
0.3
284
Normal
0.3
268
Normal
0.3
126
Normal
0.3
568
Normal
0.3
1026
Normal
0.3
953
Tumor
0.3
627
Tumor
0.3
728
Normal
0.3
878
Normal
0.3
356
Normal
0.3
874
Normal
0.3
982
Normal
0.2
664
Normal
0.2
954
Normal
0.2
146
Normal
0.2
695
Tumor
0.2
412
Normal
0.2
824
Normal
0.2
145
Tumor
0.2
535
Tumor
0.2
452
Normal
0.2
1046
Normal
0.2
136
Normal
0.2
968
Normal
0.2
376
Normal
0.2
1016
Normal
0.2
258
Normal
0.2
823
Tumor
0.2
386
Normal
0.2
944
Normal
0.2
525
Tumor
0.2
228
Normal
0.2
666
Normal
0.2
546
Normal
0.2
196
Normal
0.2
813
Tumor
0.2
914
Normal
0.2
328
Normal
0.2
922
Normal
0.2
436
Normal
0.2
383
Tumor
0.2
864
Normal
0.2
1014
Normal
0.2
112
Tumor
0.1
943
Tumor
0.1
1041
Tumor
0.1
332
Normal
0.1
138
Normal
0.1
491
Tumor
0.1
483
Tumor
0.1
714
Normal
0.1
723
Tumor
0.1
815
Tumor
0.1
884
Normal
0.1
516
Normal
0.1
446
Normal
0.1
414
Normal
0.1
963
Tumor
0.1
128
Normal
0.1
487
Tumor
0.1
353
Tumor
0.1
1022
Normal
0.1
738
Normal
0.1
466
Normal
0.1
526
Normal
0.1
272
Normal
0.1
868
Normal
0.1
222
Normal
0.1
744
Normal
0.1
456
Normal
0.1
111
Normal
0.1
455
Tumor
0.0
384
Normal
0.0
461
Tumor
0.0
648
Normal
0.0
724
Normal
0.0
478
Normal
0.0
863
Tumor
0.0
572
Normal
0.0
534
Normal
0.0
433
Tumor
0.0
212
Normal
0.0
411
Tumor
0.0
1013
Tumor
0.0
917
Tumor
0.0
465
Tumor
0.0
976
Normal
0.0
493
Tumor
0.0
283
Tumor
0.0
192
Normal
0.0
938
Normal
0.0
698
Normal
0.0
911
Tumor
0.0
514
Normal
0.0
422
Normal
-0.1
746
Normal
-0.1
223
Tumor
-0.1
742
Normal
-0.1
354
Normal
-0.1
366
Normal
-0.1
983
Tumor
-0.1
424
Normal
-0.1
428
Normal
-0.1
387
Tumor
-0.1
482
Normal
-0.1
923
Tumor
-0.1
132
Normal
-0.1
661
Tumor
-0.1
672
Normal
-0.1
312
Normal
-0.1
314
Normal
-0.1
278
Normal
-0.1
481
Tumor
-0.1
341
Tumor
-0.1
195
Tumor
-0.1
462
Normal
-0.1
951
Tumor
-0.1
444
Normal
-0.1
232
Normal
-0.1
468
Normal
-0.1
421
Tumor
-0.1
685
Tumor
-0.2
564
Normal
-0.2
756
Normal
-0.2
362
Normal
-0.2
616
Normal
-0.2
426
Normal
-0.2
528
Normal
-0.2
363
Tumor
-0.2
385
Tumor
-0.2
647
Tumor
-0.2
642
Normal
-0.2
1042
Normal
-0.2
1045
Tumor
-0.2
563
Tumor
-0.2
392
Normal
-0.2
191
Tumor
-0.2
818
Normal
-0.2
533
Tumor
-0.2
351
Tumor
-0.2
477
Tumor
-0.2
267
Tumor
-0.2
745
Tumor
-0.2
786
Normal
-0.2
663
Tumor
-0.2
1025
Tumor
-0.3
741
Tumor
-0.3
423
Tumor
-0.3
913
Tumor
-0.3
114
Normal
-0.3
727
Tumor
-0.3
393
Tumor
-0.3
141
Tumor
-0.3
474
Normal
-0.3
513
Tumor
-0.3
342
Normal
-0.3
882
Normal
-0.3
313
Tumor
-0.3
427
Tumor
-0.3
713
Tumor
-0.3
697
Tumor
-0.4
391
Tumor
-0.4
471
Tumor
-0.4
231
Tumor
-0.4
298
Normal
-0.4
365
Tumor
-0.4
388
Normal
-0.4
497
Tumor
-0.4
277
Tumor
-0.4
271
Tumor
-0.4
472
Normal
-0.4
445
Tumor
-0.4
361
Tumor
-0.4
1031
Tumor
-0.5
413
Tumor
-0.5
975
Tumor
-0.5
297
Tumor
-0.5
636
Normal
-0.5
867
Tumor
-0.5
1021
Tumor
-0.5
464
Normal
-0.5
912
Normal
-0.5
615
Tumor
-0.5
443
Tumor
-0.5
285
Tumor
-0.5
527
Tumor
-0.5
375
Tumor
-0.6
137
Tumor
-0.6
686
Normal
-0.6
125
Tumor
-0.6
257
Tumor
-0.6
881
Tumor
-0.6
573
Tumor
-0.6
135
Tumor
-0.6
618
Normal
-0.6
877
Tumor
-0.6
1032
Normal
-0.6
227
Tumor
-0.6
641
Tumor
-0.6
617
Tumor
-0.7
395
Tumor
-0.7
367
Tumor
-0.7
123
Tumor
-0.7
394
Normal
-0.7
785
Tumor
-0.7
127
Tumor
-0.7
545
Tumor
-0.7
777
Tumor
-0.7
567
Tumor
-0.8
965
Tumor
-0.8
817
Tumor
-0.8
425
Tumor
-0.8
537
Tumor
-0.9
331
Tumor
-0.9
431
Tumor
-0.9
517
Tumor
-0.9
571
Tumor
-0.9
473
Tumor
-1.0
665
Tumor
-1.0
463
Tumor
-1.0
967
Tumor
-1.1
435
Tumor
-1.2
432
Normal
-1.2
743
Tumor
-1.3
635
Tumor
-1.3
671
Tumor
-1.4
131
Tumor
-1.6
147
Tumor
N/A
148
Normal
N/A
161
Tumor
N/A
162
Normal
N/A
171
Tumor
N/A
172
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
