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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
WBP2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
96.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
294.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
263.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
247.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
242.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
239.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
222.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
219.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
213.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
213.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
209.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
203.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
200.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
197.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
194.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
186.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
185.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
185.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
183.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
180.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
180.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
180.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
177.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
171.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
167.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
167.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
164.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
163.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
162.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
161.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
160.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
160.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
158.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
157.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
154.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
152.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
149.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
149.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
147.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
146.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
145.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
143.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
142.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
141.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
141.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
141.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
140.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
140.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
140.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
140.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
139.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
138.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
137.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
137.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
135.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
134.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
132.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
130.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
130.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
129.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
129.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
128.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
128.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
127.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
124.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
123.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
123.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
123.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
123.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
121.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
121.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
120.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
120.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
119.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
119.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
119.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
118.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
118.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
118.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
118.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
118.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
117.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
116.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
115.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
115.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
115.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
115.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
114.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
114.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
114.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
112.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
112.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
112.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
112.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
111.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
111.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
110.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
110.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
110.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
110.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
109.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
109.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
109.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
108.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
108.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
108.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
108.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
108.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
107.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
106.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
106.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
106.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
105.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
105.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
104.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
103.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
103.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
103.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
102.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
102.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
102.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
102.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
102.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
101.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
101.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
101.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
101.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
100.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
100.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
100.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
99.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
98.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
98.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
98.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
98.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
97.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
97.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
97.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
96.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
96.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
96.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
96.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
96.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
96.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
96.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
95.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
95.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
95.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
95.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
94.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
94.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
94.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
93.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
93.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
93.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
93.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
92.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
92.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
92.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
92.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
92.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
91.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
91.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
91.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
91.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
91.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
90.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
90.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
90.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
90.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
90.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
90.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
90.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
89.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
89.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
89.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
88.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
88.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
87.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
87.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
87.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
87.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
87.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
87.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
86.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
86.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
86.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
85.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
85.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
85.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
85.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
85.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
85.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
85.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
84.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
84.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
84.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
84.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
83.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
83.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
83.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
82.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
82.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
82.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
82.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
81.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
81.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
81.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
81.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
81.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
81.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
81.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
81.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
81.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
80.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
80.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
80.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
80.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
80.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
80.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
79.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
79.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
78.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
78.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
78.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
78.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
78.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
78.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
78.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
78.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
78.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
77.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
77.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
77.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
76.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
76.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
76.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
76.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
76.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
76.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
75.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
74.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
74.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
74.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
74.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
73.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
73.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
73.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
73.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
73.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
72.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
72.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
72.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
72.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
72.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
72.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
71.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
71.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
70.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
70.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
70.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
70.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
70.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
70.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
70.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
70.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
69.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
69.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
69.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
69.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
69.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
68.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
68.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
68.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
68.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
68.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
67.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
67.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
67.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
67.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
67.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
66.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
66.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
66.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
66.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
66.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
66.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
65.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
65.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
65.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
65.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
63.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
63.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
63.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
62.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
62.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
62.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
62.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
62.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
61.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
61.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
61.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
61.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
61.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
60.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
60.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
60.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
59.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
59.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
59.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
58.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
58.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
58.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
58.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
57.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
56.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
56.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
56.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
56.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
56.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
55.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
55.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
55.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
55.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
54.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
54.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
54.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
54.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
54.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
54.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
53.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
53.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
52.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
50.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
49.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
49.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
48.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
48.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
48.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
47.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
47.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
46.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
45.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
45.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
45.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
44.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
44.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
44.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
44.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
44.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
44.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
42.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
41.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
41.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
40.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
40.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
38.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
38.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
38.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
33.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
33.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
29.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
WBP2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
70.2
Number of samples
231
Samples
Sample
Description
TPM
DO45163
0 years, male, NA, stage:2, alive, 960 days
194.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
183.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
166.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
161.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
160.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
154.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
152.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
148.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
147.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
128.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
125.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
122.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
121.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
119.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
119.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
119.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
118.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
117.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
116.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
113.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
110.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
108.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
106.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
104.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
104.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
103.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
101.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
100.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
97.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
97.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
96.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
95.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
95.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
95.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
94.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
94.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
92.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
92.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
92.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
92.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
92.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
91.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
90.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
90.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
89.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
89.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
88.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
87.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
87.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
86.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
86.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
86.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
85.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
85.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
85.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
85.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
85.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
84.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
84.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
84.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
84.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
82.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
82.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
81.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
80.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
80.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
79.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
79.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
79.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
79.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
78.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
78.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
76.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
76.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
75.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
75.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
75.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
75.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
75.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
74.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
74.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
74.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
73.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
73.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
73.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
72.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
72.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
71.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
71.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
70.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
70.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
70.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
69.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
69.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
69.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
69.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
69.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
69.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
69.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
69.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
69.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
67.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
67.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
67.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
67.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
66.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
66.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
65.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
65.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
65.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
65.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
64.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
64.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
63.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
63.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
63.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
63.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
63.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
63.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
63.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
63.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
63.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
62.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
62.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
61.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
61.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
61.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
61.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
61.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
60.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
60.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
60.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
60.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
59.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
59.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
59.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
59.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
58.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
58.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
58.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
58.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
57.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
57.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
57.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
57.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
57.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
56.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
56.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
56.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
55.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
55.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
55.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
55.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
55.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
54.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
54.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
54.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
54.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
54.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
53.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
53.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
53.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
53.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
52.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
52.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
52.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
51.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
51.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
51.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
51.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
51.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
50.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
50.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
50.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
50.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
49.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
49.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
48.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
48.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
48.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
47.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
47.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
47.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
47.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
46.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
46.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
46.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
45.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
45.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
45.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
45.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
44.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
44.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
44.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
43.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
43.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
43.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
43.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
43.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
43.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
43.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
42.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
42.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
41.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
41.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
41.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
40.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
40.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
40.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
40.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
40.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
39.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
39.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
39.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
39.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
39.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
39.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
38.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
38.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
37.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
37.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
35.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
34.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
34.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
34.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
33.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
31.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
30.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
29.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
26.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
24.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1027
Tumor
1.4
533
Tumor
1.3
741
Tumor
1.2
957
Tumor
1.2
953
Tumor
1.1
431
Tumor
1.1
123
Tumor
1.0
573
Tumor
0.9
981
Tumor
0.9
375
Tumor
0.9
231
Tumor
0.8
257
Tumor
0.8
355
Tumor
0.8
477
Tumor
0.8
327
Tumor
0.8
1013
Tumor
0.8
361
Tumor
0.8
525
Tumor
0.7
867
Tumor
0.7
491
Tumor
0.7
965
Tumor
0.7
861
Tumor
0.7
663
Tumor
0.6
745
Tumor
0.6
724
Normal
0.5
697
Tumor
0.5
125
Tumor
0.5
567
Tumor
0.5
435
Tumor
0.5
553
Tumor
0.4
311
Tumor
0.4
527
Tumor
0.4
127
Tumor
0.4
513
Tumor
0.4
488
Normal
0.4
915
Tumor
0.4
665
Tumor
0.4
924
Normal
0.4
492
Normal
0.4
443
Tumor
0.3
484
Normal
0.3
353
Tumor
0.3
818
Normal
0.3
395
Tumor
0.3
912
Normal
0.3
685
Tumor
0.3
423
Tumor
0.3
1026
Normal
0.3
447
Tumor
0.3
283
Tumor
0.3
536
Normal
0.3
342
Normal
0.3
537
Tumor
0.3
984
Normal
0.2
161
Tumor
0.2
978
Normal
0.2
524
Normal
0.2
554
Normal
0.2
538
Normal
0.2
224
Normal
0.2
368
Normal
0.2
851
Tumor
0.2
922
Normal
0.2
858
Normal
0.2
882
Normal
0.2
723
Tumor
0.2
498
Normal
0.2
982
Normal
0.2
228
Normal
0.2
271
Tumor
0.2
411
Tumor
0.2
744
Normal
0.2
1044
Normal
0.2
493
Tumor
0.2
451
Tumor
0.2
497
Tumor
0.2
1016
Normal
0.2
627
Tumor
0.2
954
Normal
0.2
823
Tumor
0.2
546
Normal
0.2
1014
Normal
0.2
354
Normal
0.2
383
Tumor
0.2
698
Normal
0.2
494
Normal
0.2
545
Tumor
0.2
471
Tumor
0.2
466
Normal
0.2
487
Tumor
0.1
696
Normal
0.1
186
Normal
0.1
392
Normal
0.1
478
Normal
0.1
1015
Tumor
0.1
358
Normal
0.1
572
Normal
0.1
715
Tumor
0.1
568
Normal
0.1
958
Normal
0.1
1025
Tumor
0.1
1046
Normal
0.1
473
Tumor
0.1
135
Tumor
0.1
722
Normal
0.1
983
Tumor
0.1
964
Normal
0.1
364
Normal
0.1
516
Normal
0.1
923
Tumor
0.1
142
Normal
0.1
574
Normal
0.1
328
Normal
0.1
966
Normal
0.1
448
Normal
0.1
938
Normal
0.1
394
Normal
0.1
284
Normal
0.1
526
Normal
0.1
482
Normal
0.0
211
Tumor
0.0
376
Normal
0.0
534
Normal
0.0
213
Tumor
0.0
926
Normal
0.0
944
Normal
0.0
636
Normal
0.0
344
Normal
0.0
756
Normal
0.0
564
Normal
0.0
968
Normal
0.0
286
Normal
0.0
367
Tumor
0.0
444
Normal
0.0
917
Tumor
0.0
956
Normal
0.0
514
Normal
0.0
112
Tumor
0.0
666
Normal
0.0
352
Normal
0.0
415
Tumor
0.0
916
Normal
0.0
432
Normal
0.0
911
Tumor
0.0
686
Normal
0.0
227
Tumor
0.0
695
Tumor
0.0
387
Tumor
0.0
816
Normal
0.0
977
Tumor
0.0
813
Tumor
0.0
298
Normal
0.0
1031
Tumor
0.0
468
Normal
0.0
1043
Tumor
0.0
884
Normal
0.0
1041
Tumor
-0.1
558
Normal
-0.1
462
Normal
-0.1
824
Normal
-0.1
425
Tumor
-0.1
332
Normal
-0.1
147
Tumor
-0.1
261
Tumor
-0.1
976
Normal
-0.1
672
Normal
-0.1
452
Normal
-0.1
878
Normal
-0.1
778
Normal
-0.1
212
Normal
-0.1
714
Normal
-0.1
351
Tumor
-0.1
864
Normal
-0.1
446
Normal
-0.1
472
Normal
-0.1
366
Normal
-0.1
852
Normal
-0.1
357
Tumor
-0.1
124
Normal
-0.1
883
Tumor
-0.1
192
Normal
-0.1
866
Normal
-0.1
393
Tumor
-0.1
137
Tumor
-0.1
433
Tumor
-0.1
862
Normal
-0.1
456
Normal
-0.1
384
Normal
-0.1
877
Tumor
-0.1
648
Normal
-0.1
356
Normal
-0.1
195
Tumor
-0.1
635
Tumor
-0.2
937
Tumor
-0.2
918
Normal
-0.2
557
Tumor
-0.2
664
Normal
-0.2
1021
Tumor
-0.2
171
Tumor
-0.2
914
Normal
-0.2
131
Tumor
-0.2
313
Tumor
-0.2
742
Normal
-0.2
162
Normal
-0.2
434
Normal
-0.2
535
Tumor
-0.2
571
Tumor
-0.2
865
Tumor
-0.2
857
Tumor
-0.2
483
Tumor
-0.2
146
Normal
-0.2
1022
Normal
-0.2
467
Tumor
-0.2
518
Normal
-0.2
223
Tumor
-0.2
528
Normal
-0.2
642
Normal
-0.2
185
Tumor
-0.2
148
Normal
-0.2
716
Normal
-0.2
815
Tumor
-0.2
217
Tumor
-0.2
786
Normal
-0.2
647
Tumor
-0.2
391
Tumor
-0.2
232
Normal
-0.2
661
Tumor
-0.3
481
Tumor
-0.3
1028
Normal
-0.3
412
Normal
-0.3
874
Normal
-0.3
297
Tumor
-0.3
436
Normal
-0.3
563
Tumor
-0.3
114
Normal
-0.3
975
Tumor
-0.3
755
Tumor
-0.3
963
Tumor
-0.3
746
Normal
-0.3
662
Normal
-0.3
517
Tumor
-0.3
464
Normal
-0.3
113
Tumor
-0.3
218
Normal
-0.3
187
Tumor
-0.3
343
Tumor
-0.3
426
Normal
-0.3
341
Tumor
-0.3
314
Normal
-0.3
126
Normal
-0.3
951
Tumor
-0.3
868
Normal
-0.3
427
Tumor
-0.4
515
Tumor
-0.4
414
Normal
-0.4
863
Tumor
-0.4
172
Normal
-0.4
386
Normal
-0.4
474
Normal
-0.4
196
Normal
-0.4
285
Tumor
-0.4
785
Tumor
-0.4
913
Tumor
-0.4
738
Normal
-0.4
396
Normal
-0.4
188
Normal
-0.4
465
Tumor
-0.4
814
Normal
-0.4
111
Normal
-0.4
416
Normal
-0.4
728
Normal
-0.4
873
Tumor
-0.4
421
Tumor
-0.4
138
Normal
-0.4
952
Normal
-0.4
1032
Normal
-0.4
628
Normal
-0.4
388
Normal
-0.4
413
Tumor
-0.4
523
Tumor
-0.4
268
Normal
-0.4
221
Tumor
-0.5
1042
Normal
-0.5
362
Normal
-0.5
365
Tumor
-0.5
743
Tumor
-0.5
278
Normal
-0.5
955
Tumor
-0.5
262
Normal
-0.5
713
Tumor
-0.5
214
Normal
-0.5
277
Tumor
-0.5
312
Normal
-0.5
424
Normal
-0.5
222
Normal
-0.5
428
Normal
-0.5
618
Normal
-0.5
925
Tumor
-0.5
881
Tumor
-0.6
727
Tumor
-0.6
671
Tumor
-0.6
455
Tumor
-0.6
136
Normal
-0.6
1045
Tumor
-0.6
132
Normal
-0.6
331
Tumor
-0.6
721
Tumor
-0.6
943
Tumor
-0.6
128
Normal
-0.7
641
Tumor
-0.7
258
Normal
-0.7
363
Tumor
-0.7
191
Tumor
-0.7
385
Tumor
-0.7
422
Normal
-0.7
461
Tumor
-0.7
615
Tumor
-0.7
272
Normal
-0.7
617
Tumor
-0.7
616
Normal
-0.7
145
Tumor
-0.8
921
Tumor
-0.8
967
Tumor
-0.8
737
Tumor
-0.8
777
Tumor
-0.8
817
Tumor
-0.8
445
Tumor
-0.9
267
Tumor
-0.9
463
Tumor
-0.9
141
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
