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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UTP3 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
29.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
27.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
27.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
25.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
24.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
24.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
23.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
23.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
23.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
23.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
23.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
23.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
22.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
22.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
22.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
22.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
21.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
21.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
21.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
21.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
20.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
20.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
20.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
20.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
19.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
19.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
19.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
19.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
19.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
18.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
18.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
18.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
18.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
18.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
17.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
17.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
17.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
17.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
17.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
16.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
16.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
16.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
16.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
16.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
16.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
16.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
16.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
16.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
16.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
16.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
15.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
15.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
15.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
15.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
15.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
15.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
15.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
15.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
15.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
15.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
15.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
15.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
15.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
15.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
15.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
15.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
15.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
15.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
15.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
15.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
15.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
14.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
14.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
14.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
14.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
14.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
14.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
14.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
14.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
14.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
14.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
14.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
14.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
14.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
13.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
13.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
13.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
13.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
13.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
13.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
13.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
13.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
13.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
13.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
13.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
13.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
13.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
12.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
12.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
12.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
12.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
12.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
12.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
12.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
12.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
12.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
12.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
12.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
12.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
12.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
12.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
12.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
12.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
12.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
12.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
12.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
12.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
12.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
12.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
12.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
12.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
12.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
12.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
12.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
12.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
12.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
11.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
11.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
11.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
11.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
11.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
11.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
11.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
11.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
11.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
11.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
11.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
11.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
11.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
11.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
11.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
11.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
11.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
11.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
11.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
11.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
11.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
11.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
11.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
11.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
11.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
11.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
11.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
10.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
10.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
10.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
10.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
10.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
10.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
10.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
10.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
10.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
10.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
10.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
10.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
10.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
10.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
10.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
10.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
10.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
10.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
10.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
10.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
10.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
10.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
10.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
10.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
10.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
9.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
9.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
9.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
9.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
9.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
9.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
9.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
9.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
9.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
9.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
8.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
8.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
8.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
8.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
8.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
8.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
8.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
8.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
8.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
7.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
7.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
7.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
7.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
7.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
7.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
6.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
6.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
5.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
5.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UTP3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.9
Number of samples
231
Samples
Sample
Description
TPM
DO23544
0 years, male, NA, stage:2, alive, 960 days
38.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
31.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
30.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
28.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
27.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
27.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
27.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
26.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
22.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
22.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
22.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
22.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
22.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
21.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
21.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
20.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
20.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
20.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
20.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
19.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
19.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
19.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
18.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
18.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
18.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
18.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
18.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
18.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
18.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
18.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
17.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
17.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
17.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
17.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
17.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
17.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
17.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
17.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
17.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
17.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
16.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
16.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
16.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
16.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
16.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
16.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
16.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
16.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
16.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
16.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
16.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
16.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
16.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
15.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
15.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
15.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
15.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
15.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
15.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
15.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
15.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
15.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
15.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
15.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
15.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
14.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
14.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
14.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
14.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
14.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
14.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
14.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
14.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
14.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
14.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
14.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
14.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
14.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
14.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
13.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
13.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
13.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
13.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
13.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
13.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
13.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
13.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
13.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
13.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
13.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
13.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
13.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
13.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
13.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
12.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
12.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
12.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
12.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
12.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
12.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
12.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
12.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
12.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
12.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
12.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
12.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
12.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
12.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
12.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
12.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
12.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
12.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
12.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
12.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
12.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
12.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
12.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
12.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
12.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
12.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
12.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
11.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
11.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
11.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
11.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
11.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
11.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
11.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
11.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
10.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
10.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
10.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
10.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
10.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
10.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
10.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
10.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
10.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
10.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
9.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
9.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
9.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
9.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
9.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
9.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
9.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
9.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
9.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
8.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
8.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
8.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
7.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
7.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
7.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
7.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
7.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
6.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
6.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
5.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
5.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
5.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
4.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
4.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
685
Tumor
1.2
351
Tumor
1.2
331
Tumor
1.2
965
Tumor
1.2
537
Tumor
1.0
567
Tumor
1.0
967
Tumor
0.9
951
Tumor
0.9
557
Tumor
0.8
227
Tumor
0.8
743
Tumor
0.8
285
Tumor
0.8
367
Tumor
0.7
483
Tumor
0.7
363
Tumor
0.6
671
Tumor
0.6
1041
Tumor
0.6
715
Tumor
0.6
327
Tumor
0.6
983
Tumor
0.6
817
Tumor
0.6
427
Tumor
0.6
925
Tumor
0.5
724
Normal
0.5
413
Tumor
0.5
665
Tumor
0.5
1021
Tumor
0.5
113
Tumor
0.5
815
Tumor
0.5
861
Tumor
0.5
535
Tumor
0.5
545
Tumor
0.5
493
Tumor
0.5
131
Tumor
0.5
395
Tumor
0.5
661
Tumor
0.5
447
Tumor
0.5
471
Tumor
0.5
267
Tumor
0.5
473
Tumor
0.5
1031
Tumor
0.5
123
Tumor
0.5
497
Tumor
0.5
517
Tumor
0.4
353
Tumor
0.4
487
Tumor
0.4
533
Tumor
0.4
867
Tumor
0.4
975
Tumor
0.4
883
Tumor
0.4
1025
Tumor
0.3
171
Tumor
0.3
385
Tumor
0.3
573
Tumor
0.3
387
Tumor
0.3
957
Tumor
0.3
525
Tumor
0.3
211
Tumor
0.3
391
Tumor
0.3
913
Tumor
0.3
1015
Tumor
0.3
355
Tumor
0.3
357
Tumor
0.3
963
Tumor
0.3
467
Tumor
0.2
127
Tumor
0.2
423
Tumor
0.2
873
Tumor
0.2
877
Tumor
0.2
727
Tumor
0.2
1027
Tumor
0.2
191
Tumor
0.2
261
Tumor
0.2
641
Tumor
0.2
213
Tumor
0.2
187
Tumor
0.2
361
Tumor
0.2
223
Tumor
0.2
755
Tumor
0.2
697
Tumor
0.2
375
Tumor
0.2
221
Tumor
0.2
536
Normal
0.2
513
Tumor
0.2
977
Tumor
0.2
721
Tumor
0.2
923
Tumor
0.2
527
Tumor
0.2
863
Tumor
0.2
881
Tumor
0.2
571
Tumor
0.2
1013
Tumor
0.2
112
Tumor
0.1
383
Tumor
0.1
981
Tumor
0.1
534
Normal
0.1
563
Tumor
0.1
917
Tumor
0.1
554
Normal
0.1
953
Tumor
0.1
283
Tumor
0.1
298
Normal
0.1
443
Tumor
0.1
943
Tumor
0.1
617
Tumor
0.1
523
Tumor
0.1
425
Tumor
0.1
663
Tumor
0.1
857
Tumor
0.1
911
Tumor
0.1
964
Normal
0.1
785
Tumor
0.1
433
Tumor
0.1
1014
Normal
0.1
916
Normal
0.1
271
Tumor
0.1
135
Tumor
0.1
713
Tumor
0.1
431
Tumor
0.1
415
Tumor
0.1
231
Tumor
0.1
813
Tumor
0.1
217
Tumor
0.1
741
Tumor
0.1
958
Normal
0.1
851
Tumor
0.1
937
Tumor
0.1
966
Normal
0.1
538
Normal
0.1
648
Normal
0.1
553
Tumor
0.1
955
Tumor
0.0
185
Tumor
0.0
714
Normal
0.0
455
Tumor
0.0
1045
Tumor
0.0
915
Tumor
0.0
635
Tumor
0.0
814
Normal
0.0
737
Tumor
0.0
477
Tumor
0.0
938
Normal
0.0
222
Normal
0.0
954
Normal
0.0
546
Normal
0.0
435
Tumor
0.0
491
Tumor
0.0
297
Tumor
0.0
461
Tumor
0.0
615
Tumor
0.0
515
Tumor
0.0
472
Normal
0.0
664
Normal
0.0
824
Normal
0.0
257
Tumor
0.0
196
Normal
0.0
341
Tumor
0.0
746
Normal
0.0
627
Tumor
0.0
311
Tumor
0.0
195
Tumor
-0.1
488
Normal
-0.1
968
Normal
-0.1
666
Normal
-0.1
858
Normal
-0.1
984
Normal
-0.1
451
Tumor
-0.1
368
Normal
-0.1
524
Normal
-0.1
976
Normal
-0.1
137
Tumor
-0.1
445
Tumor
-0.1
462
Normal
-0.1
777
Tumor
-0.1
161
Tumor
-0.1
444
Normal
-0.1
284
Normal
-0.1
956
Normal
-0.1
865
Tumor
-0.1
862
Normal
-0.1
366
Normal
-0.1
421
Tumor
-0.1
1016
Normal
-0.1
1032
Normal
-0.1
716
Normal
-0.1
484
Normal
-0.1
492
Normal
-0.1
745
Tumor
-0.1
696
Normal
-0.1
944
Normal
-0.1
922
Normal
-0.1
978
Normal
-0.1
465
Tumor
-0.1
212
Normal
-0.1
816
Normal
-0.1
478
Normal
-0.1
647
Tumor
-0.1
786
Normal
-0.1
224
Normal
-0.1
1022
Normal
-0.1
218
Normal
-0.1
823
Tumor
-0.1
912
Normal
-0.1
1042
Normal
-0.1
1028
Normal
-0.1
412
Normal
-0.2
482
Normal
-0.2
921
Tumor
-0.2
145
Tumor
-0.2
528
Normal
-0.2
672
Normal
-0.2
128
Normal
-0.2
852
Normal
-0.2
396
Normal
-0.2
214
Normal
-0.2
818
Normal
-0.2
756
Normal
-0.2
494
Normal
-0.2
866
Normal
-0.2
686
Normal
-0.2
125
Tumor
-0.2
952
Normal
-0.2
982
Normal
-0.2
376
Normal
-0.2
286
Normal
-0.2
868
Normal
-0.2
432
Normal
-0.2
558
Normal
-0.2
778
Normal
-0.2
312
Normal
-0.2
572
Normal
-0.2
918
Normal
-0.2
448
Normal
-0.2
411
Tumor
-0.2
882
Normal
-0.2
514
Normal
-0.2
344
Normal
-0.2
365
Tumor
-0.2
481
Tumor
-0.2
662
Normal
-0.2
328
Normal
-0.2
228
Normal
-0.2
636
Normal
-0.2
388
Normal
-0.2
141
Tumor
-0.2
332
Normal
-0.2
356
Normal
-0.3
314
Normal
-0.3
352
Normal
-0.3
1026
Normal
-0.3
424
Normal
-0.3
564
Normal
-0.3
864
Normal
-0.3
416
Normal
-0.3
1043
Tumor
-0.3
463
Tumor
-0.3
518
Normal
-0.3
111
Normal
-0.3
738
Normal
-0.3
192
Normal
-0.3
722
Normal
-0.3
422
Normal
-0.3
878
Normal
-0.3
874
Normal
-0.3
124
Normal
-0.3
446
Normal
-0.3
574
Normal
-0.3
926
Normal
-0.3
354
Normal
-0.3
343
Tumor
-0.3
526
Normal
-0.3
364
Normal
-0.3
498
Normal
-0.3
342
Normal
-0.3
436
Normal
-0.3
428
Normal
-0.3
516
Normal
-0.3
268
Normal
-0.3
142
Normal
-0.3
278
Normal
-0.3
393
Tumor
-0.3
394
Normal
-0.3
1044
Normal
-0.4
384
Normal
-0.4
414
Normal
-0.4
884
Normal
-0.4
1046
Normal
-0.4
148
Normal
-0.4
628
Normal
-0.4
616
Normal
-0.4
114
Normal
-0.4
262
Normal
-0.4
744
Normal
-0.4
723
Tumor
-0.4
392
Normal
-0.4
728
Normal
-0.4
147
Tumor
-0.4
914
Normal
-0.4
434
Normal
-0.4
172
Normal
-0.4
162
Normal
-0.4
126
Normal
-0.5
466
Normal
-0.5
924
Normal
-0.5
695
Tumor
-0.5
258
Normal
-0.5
232
Normal
-0.5
358
Normal
-0.5
136
Normal
-0.5
618
Normal
-0.5
362
Normal
-0.5
272
Normal
-0.5
146
Normal
-0.5
386
Normal
-0.5
188
Normal
-0.5
474
Normal
-0.5
426
Normal
-0.5
313
Tumor
-0.5
468
Normal
-0.5
568
Normal
-0.5
452
Normal
-0.6
186
Normal
-0.6
742
Normal
-0.6
642
Normal
-0.6
138
Normal
-0.6
132
Normal
-0.6
277
Tumor
-0.6
698
Normal
-0.6
456
Normal
-0.6
464
Normal
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
