MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2.8 nTPM
HPA Brain:17.3 nTPM
GTEx:2.8 nTPM
FANTOM5:11.8 Scaled Tags Per Million
Pig:5.9 nTPM
Mouse:6.0 nTPM
Allen mouse:1.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 17.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.6
2586 Male, age 75, left hemisphere 26.7
2019 Male, age 18, unknown 14.3
2828 Female, age 72, unknown 13.2
1830 Male, age 51, unknown 12.9
1833 Male, age 53, unknown 12.7
1827 Male, age 72, unknown 12.4
1870 Female, age 42, unknown 12.4
2666 Male, age 74, left hemisphere 11.4
2411 Female, age 72, unknown 10.2
2219 Male, age 76, both hemispheres 9.7
Dorsal raphe nucleus
nTPM: 13.9
2016 Female, age 72, unknown 18.0
1828 Male, age 53, unknown 13.6
2298 Female, age 72, unknown 13.2
2750 Male, age 76, both hemispheres 12.4
2047 Male, age 72, unknown 12.2
Inferior colliculus
nTPM: 14.6
2849 Male, age 72, unknown 16.8
1848 Female, age 42, unknown 14.8
1890 Male, age 53, unknown 14.3
2097 Female, age 72, unknown 12.5
Median raphe nucleus
nTPM: 16.0
2220 Male, age 76, midline 16.0
Periaquaductal grey, anterior
nTPM: 13.8
1795 Male, age 51, unknown 15.2
2502 Female, age 75, unknown 13.9
1947 Male, age 18, unknown 12.4
Periaquaductal grey, dorsal
nTPM: 16.3
2850 Male, age 76, both hemispheres 21.4
1840 Male, age 53, unknown 16.8
1831 Male, age 72, unknown 14.9
2464 Female, age 72, unknown 12.2
Periaquaductal grey, lateral
nTPM: 17.3
2140 Male, age 76, both hemispheres 21.3
2272 Male, age 74, both hemispheres 15.8
2053 Male, age 18, unknown 14.9
Pretectal area
nTPM: 13.9
2407 Male, age 75, both hemispheres 18.3
2273 Male, age 74, both hemispheres 17.7
2316 Male, age 76, right hemisphere 15.8
2825 Male, age 18, unknown 14.1
1817 Female, age 42, unknown 13.5
2007 Male, age 72, unknown 12.6
1815 Male, age 53, unknown 12.5
2667 Female, age 75, unknown 12.5
1816 Male, age 51, unknown 12.4
2224 Female, age 72, unknown 12.2
1944 Female, age 72, unknown 11.2
Red nucleus
nTPM: 13.6
2584 Male, age 75, left hemisphere 16.6
2769 Male, age 72, unknown 15.4
2227 Male, age 72, unknown 14.9
1954 Female, age 42, unknown 14.1
2823 Male, age 76, right hemisphere 14.0
1904 Male, age 53, unknown 13.5
2785 Male, age 18, unknown 13.2
1865 Male, age 51, unknown 13.0
2725 Female, age 75, unknown 12.8
2588 Male, age 74, left hemisphere 12.3
1821 Female, age 72, unknown 11.9
2503 Female, age 72, unknown 11.0
Substantia nigra
nTPM: 12.4
2590 Female, age 75, unknown 17.1
2583 Male, age 75, right hemisphere 16.6
2665 Male, age 74, both hemispheres 13.0
2699 Male, age 18, unknown 13.0
1941 Male, age 53, unknown 11.4
1851 Male, age 51, unknown 11.2
1889 Female, age 72, unknown 10.9
1916 Female, age 42, unknown 10.3
2241 Male, age 72, unknown 10.3
2409 Female, age 72, unknown 9.9
Superior colliculus
nTPM: 13.2
2664 Male, age 75, both hemispheres 18.8
1995 Male, age 72, unknown 14.6
2261 Male, age 18, unknown 14.2
1839 Male, age 51, unknown 13.4
1796 Male, age 53, unknown 12.5
2587 Male, age 74, left hemisphere 12.2
1895 Male, age 76, right hemisphere 12.0
2087 Female, age 72, unknown 11.9
1913 Female, age 42, unknown 11.5
2668 Female, age 75, unknown 10.6
Ventral tegmental area
nTPM: 12.2
2021 Male, age 53, unknown 14.7
2223 Female, age 72, unknown 13.4
1942 Male, age 51, unknown 13.3
2218 Male, age 76, both hemispheres 12.1
1915 Female, age 42, unknown 10.9
2410 Female, age 72, unknown 8.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 2.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2.8
Samples: 139

Max nTPM: 5.8
Min nTPM: 1.0
Std nTPM: 0.9
Median nTPM: 2.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 5.8
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 5.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 5.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 5.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 5.0
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 4.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 4.6
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 4.5
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 4.3
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 4.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 4.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 11.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 11.8
FF:10158-103A5 76 years, female 11.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 5.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 4.8
Samples: 4

Max nTPM: 6.2
Min nTPM: 3.9
Sample A Female 3.9
Sample B Female 4.1
Sample C Male 5.1
Sample D Male 6.2
Midbrain
nTPM: 5.4
Samples: 4

Max nTPM: 6.5
Min nTPM: 3.9
Sample A Female 4.6
Sample B Female 3.9
Sample C Male 6.5
Sample D Male 6.4
Periaqueductal gray
nTPM: 5.0
Samples: 3

Max nTPM: 6.2
Min nTPM: 3.8
Sample B Female 3.8
Sample C Male 6.2
Sample D Male 5.0
Superior colliculi
nTPM: 5.9
Samples: 4

Max nTPM: 6.7
Min nTPM: 4.2
Sample A Female 6.3
Sample B Female 4.2
Sample C Male 6.4
Sample D Male 6.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 6.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.0
Samples: 4

Max nTPM: 6.8
Min nTPM: 5.4
Sample A Male 5.8
Sample B Male 5.4
Sample C Female 6.8
Sample D Female 5.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.7
793 Antisense, RP_Baylor_102956, Mouse strain C57BL/6J (56 days, male) 3.0
100145388 Antisense, RP_110519_03_B08, Mouse strain C57BL/6J (56 days, male) 0.4

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