MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.4 nTPM
HPA Brain:14.0 nTPM
GTEx:20.4 nTPM
FANTOM5:39.4 Scaled Tags Per Million
Pig:19.7 nTPM
Mouse:39.0 nTPM
Allen mouse:1.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 14.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.8
2586 Male, age 75, left hemisphere 15.6
1870 Female, age 42, unknown 14.9
2666 Male, age 74, left hemisphere 14.3
2411 Female, age 72, unknown 14.2
1827 Male, age 72, unknown 13.8
2019 Male, age 18, unknown 13.6
1830 Male, age 51, unknown 13.1
2828 Female, age 72, unknown 13.1
1833 Male, age 53, unknown 12.9
2219 Male, age 76, both hemispheres 12.1
Dorsal raphe nucleus
nTPM: 12.2
2750 Male, age 76, both hemispheres 14.0
2047 Male, age 72, unknown 12.5
2298 Female, age 72, unknown 12.5
1828 Male, age 53, unknown 11.7
2016 Female, age 72, unknown 10.3
Inferior colliculus
nTPM: 12.2
2849 Male, age 72, unknown 13.9
1848 Female, age 42, unknown 12.7
1890 Male, age 53, unknown 11.4
2097 Female, age 72, unknown 10.9
Median raphe nucleus
nTPM: 14.0
2220 Male, age 76, midline 14.0
Periaquaductal grey, anterior
nTPM: 13.6
2502 Female, age 75, unknown 14.5
1947 Male, age 18, unknown 13.2
1795 Male, age 51, unknown 13.1
Periaquaductal grey, dorsal
nTPM: 11.8
1840 Male, age 53, unknown 14.3
2464 Female, age 72, unknown 11.3
1831 Male, age 72, unknown 11.2
2850 Male, age 76, both hemispheres 10.5
Periaquaductal grey, lateral
nTPM: 12.3
2140 Male, age 76, both hemispheres 13.1
2053 Male, age 18, unknown 12.3
2272 Male, age 74, both hemispheres 11.5
Pretectal area
nTPM: 11.9
2407 Male, age 75, both hemispheres 13.2
2825 Male, age 18, unknown 13.0
2007 Male, age 72, unknown 12.8
1817 Female, age 42, unknown 12.7
1816 Male, age 51, unknown 12.6
2273 Male, age 74, both hemispheres 12.2
1815 Male, age 53, unknown 12.0
2316 Male, age 76, right hemisphere 11.6
1944 Female, age 72, unknown 10.8
2224 Female, age 72, unknown 10.6
2667 Female, age 75, unknown 9.3
Red nucleus
nTPM: 13.8
2503 Female, age 72, unknown 15.8
1865 Male, age 51, unknown 15.5
1904 Male, age 53, unknown 15.0
1821 Female, age 72, unknown 14.6
1954 Female, age 42, unknown 14.3
2588 Male, age 74, left hemisphere 14.2
2227 Male, age 72, unknown 13.7
2769 Male, age 72, unknown 13.3
2725 Female, age 75, unknown 13.2
2584 Male, age 75, left hemisphere 12.4
2823 Male, age 76, right hemisphere 12.1
2785 Male, age 18, unknown 11.8
Substantia nigra
nTPM: 12.8
1916 Female, age 42, unknown 15.1
1851 Male, age 51, unknown 14.2
1889 Female, age 72, unknown 14.0
2583 Male, age 75, right hemisphere 13.7
2590 Female, age 75, unknown 13.2
2699 Male, age 18, unknown 12.8
1941 Male, age 53, unknown 11.4
2665 Male, age 74, both hemispheres 11.4
2409 Female, age 72, unknown 11.3
2241 Male, age 72, unknown 10.6
Superior colliculus
nTPM: 12.7
2668 Female, age 75, unknown 15.1
2587 Male, age 74, left hemisphere 14.0
2261 Male, age 18, unknown 13.9
1895 Male, age 76, right hemisphere 13.0
1995 Male, age 72, unknown 13.0
2664 Male, age 75, both hemispheres 12.4
1913 Female, age 42, unknown 12.0
1796 Male, age 53, unknown 11.9
1839 Male, age 51, unknown 11.0
2087 Female, age 72, unknown 10.9
Ventral tegmental area
nTPM: 12.3
1915 Female, age 42, unknown 14.0
2410 Female, age 72, unknown 12.7
2021 Male, age 53, unknown 12.6
2223 Female, age 72, unknown 11.7
1942 Male, age 51, unknown 11.5
2218 Male, age 76, both hemispheres 11.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 20.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.4
Samples: 139

Max nTPM: 37.3
Min nTPM: 13.0
Std nTPM: 4.3
Median nTPM: 19.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 37.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 36.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 36.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 32.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 31.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 31.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 30.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 29.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 28.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 27.1
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 26.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 39.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 39.4
FF:10158-103A5 76 years, female 39.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 19.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 19.1
Samples: 4

Max nTPM: 21.3
Min nTPM: 17.0
Sample A Female 19.4
Sample B Female 18.7
Sample C Male 17.0
Sample D Male 21.3
Midbrain
nTPM: 19.4
Samples: 4

Max nTPM: 20.6
Min nTPM: 17.3
Sample A Female 20.3
Sample B Female 19.3
Sample C Male 17.3
Sample D Male 20.6
Periaqueductal gray
nTPM: 17.3
Samples: 3

Max nTPM: 17.9
Min nTPM: 17.0
Sample B Female 17.9
Sample C Male 17.1
Sample D Male 17.0
Superior colliculi
nTPM: 19.7
Samples: 4

Max nTPM: 21.3
Min nTPM: 18.7
Sample A Female 19.8
Sample B Female 21.3
Sample C Male 18.7
Sample D Male 18.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 39.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 39.0
Samples: 4

Max nTPM: 40.0
Min nTPM: 38.3
Sample A Male 40.0
Sample B Male 38.3
Sample C Female 38.6
Sample D Female 39.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
67815550 Antisense, RP_040920_01_H10, Mouse strain C57BL/6J (56 days, male) 1.2

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