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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RRP8 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
26.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
24.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
24.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
22.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
21.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
20.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
20.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
20.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
19.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
18.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
18.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
18.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
18.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
17.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
16.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
16.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
16.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
16.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
16.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
16.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
15.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
15.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
15.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
15.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
13.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
13.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
13.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
13.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
13.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
13.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
13.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
13.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
13.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
13.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
13.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
13.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
13.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
13.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
13.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
13.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
12.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
12.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
12.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
12.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
12.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
12.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
12.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
12.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
12.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
12.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
12.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
12.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
12.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
12.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
11.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
11.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
11.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
11.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
11.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
11.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
11.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
11.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
11.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
11.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
11.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
11.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
11.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
11.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
11.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
10.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
10.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
10.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
10.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
10.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
10.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
10.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
10.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
10.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
10.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
10.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
10.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
9.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
9.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
9.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
9.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
9.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
9.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
9.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
9.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
9.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
9.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
9.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
9.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
9.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
9.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
9.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
9.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
8.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
8.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
8.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
8.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
8.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
8.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
8.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
8.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
8.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
8.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
8.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
8.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
8.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
8.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
8.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
8.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
8.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
7.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
7.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
7.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
7.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
7.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
7.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
7.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
7.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
7.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
7.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
7.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
7.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
7.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
7.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
7.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
7.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
7.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
7.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
7.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
7.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
6.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
6.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
6.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
6.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
6.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
6.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
6.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
6.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
6.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
6.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
6.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
6.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
6.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
6.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
6.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
5.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
5.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
5.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
5.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
5.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
5.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
5.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
5.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
5.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
5.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
5.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
5.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
5.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
4.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
4.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
4.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
4.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
4.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
4.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
4.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
4.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
4.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
4.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
3.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
3.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
3.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
3.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
3.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
3.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
3.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
3.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
3.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
3.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
3.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
2.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
2.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RRP8 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.9
Number of samples
231
Samples
Sample
Description
TPM
DO45145
0 years, male, NA, stage:3, dead, 60 days
24.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
21.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
20.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
19.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
19.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
18.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
18.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
17.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
17.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
16.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
16.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
16.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
15.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
14.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
14.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
14.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
14.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
14.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
14.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
14.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
14.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
14.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
14.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
13.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
13.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
13.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
13.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
13.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
13.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
13.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
13.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
13.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
13.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
12.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
12.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
12.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
12.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
12.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
12.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
12.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
12.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
12.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
12.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
12.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
12.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
12.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
12.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
12.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
12.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
12.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
11.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
11.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
11.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
11.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
11.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
11.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
11.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
11.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
11.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
11.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
11.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
11.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
11.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
11.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
11.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
11.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
11.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
10.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
10.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
10.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
10.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
10.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
10.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
10.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
10.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
10.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
10.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
10.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
10.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
10.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
10.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
10.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
10.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
10.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
9.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
9.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
9.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
9.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
9.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
9.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
9.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
9.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
9.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
9.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
9.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
8.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
8.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
8.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
8.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
8.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
8.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
8.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
8.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
8.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
8.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
8.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
8.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
7.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
7.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
7.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
7.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
7.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
7.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
7.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
7.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
7.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
7.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
7.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
7.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
6.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
6.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
6.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
6.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
6.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
6.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
6.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
5.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
5.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
5.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
5.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
4.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
685
Tumor
1.1
665
Tumor
1.0
671
Tumor
1.0
557
Tumor
0.9
367
Tumor
0.9
391
Tumor
0.8
427
Tumor
0.8
123
Tumor
0.8
967
Tumor
0.8
331
Tumor
0.8
483
Tumor
0.7
113
Tumor
0.7
537
Tumor
0.7
1027
Tumor
0.7
285
Tumor
0.7
267
Tumor
0.7
171
Tumor
0.7
517
Tumor
0.6
353
Tumor
0.6
533
Tumor
0.5
865
Tumor
0.5
535
Tumor
0.5
227
Tumor
0.5
715
Tumor
0.5
545
Tumor
0.5
965
Tumor
0.5
221
Tumor
0.5
957
Tumor
0.5
635
Tumor
0.5
361
Tumor
0.5
395
Tumor
0.5
257
Tumor
0.4
387
Tumor
0.4
187
Tumor
0.4
1021
Tumor
0.4
351
Tumor
0.4
413
Tumor
0.4
573
Tumor
0.4
1041
Tumor
0.4
471
Tumor
0.4
477
Tumor
0.4
724
Normal
0.4
567
Tumor
0.4
617
Tumor
0.3
925
Tumor
0.3
851
Tumor
0.3
513
Tumor
0.3
355
Tumor
0.3
327
Tumor
0.3
877
Tumor
0.3
191
Tumor
0.3
125
Tumor
0.3
743
Tumor
0.3
497
Tumor
0.3
473
Tumor
0.3
145
Tumor
0.2
713
Tumor
0.2
873
Tumor
0.2
525
Tumor
0.2
953
Tumor
0.2
1025
Tumor
0.2
375
Tumor
0.2
815
Tumor
0.2
328
Normal
0.2
861
Tumor
0.2
883
Tumor
0.2
271
Tumor
0.2
297
Tumor
0.2
1031
Tumor
0.2
951
Tumor
0.2
127
Tumor
0.2
217
Tumor
0.2
923
Tumor
0.2
911
Tumor
0.2
385
Tumor
0.2
737
Tumor
0.2
223
Tumor
0.2
443
Tumor
0.2
493
Tumor
0.2
527
Tumor
0.2
461
Tumor
0.1
383
Tumor
0.1
313
Tumor
0.1
983
Tumor
0.1
112
Tumor
0.1
185
Tumor
0.1
467
Tumor
0.1
741
Tumor
0.1
431
Tumor
0.1
817
Tumor
0.1
341
Tumor
0.1
881
Tumor
0.1
1013
Tumor
0.1
363
Tumor
0.1
523
Tumor
0.1
482
Normal
0.1
616
Normal
0.1
661
Tumor
0.1
258
Normal
0.1
423
Tumor
0.1
132
Normal
0.1
867
Tumor
0.1
636
Normal
0.1
147
Tumor
0.1
136
Normal
0.1
484
Normal
0.1
356
Normal
0.0
515
Tumor
0.0
213
Tumor
0.0
131
Tumor
0.0
135
Tumor
0.0
232
Normal
0.0
727
Tumor
0.0
977
Tumor
0.0
514
Normal
0.0
456
Normal
0.0
455
Tumor
0.0
228
Normal
0.0
697
Tumor
0.0
695
Tumor
0.0
785
Tumor
0.0
516
Normal
0.0
446
Normal
0.0
981
Tumor
0.0
494
Normal
0.0
518
Normal
0.0
964
Normal
0.0
411
Tumor
0.0
534
Normal
0.0
488
Normal
0.0
161
Tumor
0.0
756
Normal
0.0
568
Normal
0.0
1014
Normal
0.0
723
Tumor
0.0
466
Normal
0.0
464
Normal
0.0
463
Tumor
0.0
524
Normal
0.0
628
Normal
0.0
272
Normal
0.0
412
Normal
0.0
913
Tumor
0.0
388
Normal
0.0
1032
Normal
0.0
138
Normal
0.0
963
Tumor
0.0
451
Tumor
0.0
195
Tumor
0.0
866
Normal
-0.1
146
Normal
-0.1
364
Normal
-0.1
472
Normal
-0.1
462
Normal
-0.1
1028
Normal
-0.1
863
Tumor
-0.1
465
Tumor
-0.1
481
Tumor
-0.1
421
Tumor
-0.1
498
Normal
-0.1
882
Normal
-0.1
142
Normal
-0.1
426
Normal
-0.1
615
Tumor
-0.1
286
Normal
-0.1
433
Tumor
-0.1
864
Normal
-0.1
912
Normal
-0.1
755
Tumor
-0.1
172
Normal
-0.1
432
Normal
-0.1
975
Tumor
-0.1
563
Tumor
-0.1
468
Normal
-0.1
342
Normal
-0.1
222
Normal
-0.1
1042
Normal
-0.1
268
Normal
-0.1
211
Tumor
-0.1
137
Tumor
-0.1
944
Normal
-0.1
823
Tumor
-0.1
777
Tumor
-0.1
212
Normal
-0.1
786
Normal
-0.1
284
Normal
-0.1
357
Tumor
-0.1
954
Normal
-0.1
526
Normal
-0.1
742
Normal
-0.1
436
Normal
-0.1
862
Normal
-0.1
283
Tumor
-0.1
188
Normal
-0.1
738
Normal
-0.1
224
Normal
-0.1
1026
Normal
-0.1
956
Normal
-0.1
414
Normal
-0.1
262
Normal
-0.1
968
Normal
-0.1
553
Tumor
-0.1
698
Normal
-0.1
393
Tumor
-0.1
162
Normal
-0.1
148
Normal
-0.1
857
Tumor
-0.1
824
Normal
-0.1
618
Normal
-0.1
424
Normal
-0.1
422
Normal
-0.1
474
Normal
-0.1
1015
Tumor
-0.1
1046
Normal
-0.1
428
Normal
-0.1
647
Tumor
-0.1
487
Tumor
-0.1
572
Normal
-0.1
884
Normal
-0.1
362
Normal
-0.1
1022
Normal
-0.1
641
Tumor
-0.1
571
Tumor
-0.2
376
Normal
-0.2
664
Normal
-0.2
858
Normal
-0.2
574
Normal
-0.2
1045
Tumor
-0.2
365
Tumor
-0.2
868
Normal
-0.2
926
Normal
-0.2
231
Tumor
-0.2
976
Normal
-0.2
396
Normal
-0.2
696
Normal
-0.2
744
Normal
-0.2
386
Normal
-0.2
958
Normal
-0.2
196
Normal
-0.2
358
Normal
-0.2
314
Normal
-0.2
648
Normal
-0.2
392
Normal
-0.2
448
Normal
-0.2
814
Normal
-0.2
114
Normal
-0.2
394
Normal
-0.2
491
Tumor
-0.2
938
Normal
-0.2
564
Normal
-0.2
662
Normal
-0.2
452
Normal
-0.2
435
Tumor
-0.2
722
Normal
-0.2
128
Normal
-0.2
642
Normal
-0.2
278
Normal
-0.2
918
Normal
-0.2
728
Normal
-0.2
111
Normal
-0.2
298
Normal
-0.2
478
Normal
-0.2
186
Normal
-0.2
416
Normal
-0.2
425
Tumor
-0.2
354
Normal
-0.2
528
Normal
-0.2
714
Normal
-0.2
554
Normal
-0.2
558
Normal
-0.2
352
Normal
-0.2
384
Normal
-0.2
1016
Normal
-0.2
126
Normal
-0.2
984
Normal
-0.2
778
Normal
-0.2
746
Normal
-0.2
878
Normal
-0.2
492
Normal
-0.2
943
Tumor
-0.2
447
Tumor
-0.3
978
Normal
-0.3
546
Normal
-0.3
672
Normal
-0.3
261
Tumor
-0.3
332
Normal
-0.3
124
Normal
-0.3
415
Tumor
-0.3
666
Normal
-0.3
366
Normal
-0.3
813
Tumor
-0.3
816
Normal
-0.3
874
Normal
-0.3
663
Tumor
-0.3
141
Tumor
-0.3
818
Normal
-0.3
434
Normal
-0.3
444
Normal
-0.3
915
Tumor
-0.3
721
Tumor
-0.3
982
Normal
-0.3
922
Normal
-0.3
311
Tumor
-0.3
966
Normal
-0.3
952
Normal
-0.3
924
Normal
-0.3
343
Tumor
-0.3
1044
Normal
-0.3
627
Tumor
-0.3
368
Normal
-0.3
218
Normal
-0.4
852
Normal
-0.4
921
Tumor
-0.4
344
Normal
-0.4
917
Tumor
-0.4
538
Normal
-0.4
192
Normal
-0.4
716
Normal
-0.4
955
Tumor
-0.4
214
Normal
-0.4
686
Normal
-0.4
445
Tumor
-0.4
916
Normal
-0.5
277
Tumor
-0.5
536
Normal
-0.5
914
Normal
-0.5
937
Tumor
-0.5
312
Normal
-0.6
1043
Tumor
-0.7
745
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
