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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HSD17B7 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
54.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
52.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
46.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
45.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
43.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
41.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
37.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
37.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
36.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
36.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
35.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
34.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
33.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
32.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
31.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
31.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
31.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
30.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
30.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
30.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
29.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
29.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
29.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
28.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
28.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
28.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
27.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
27.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
27.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
26.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
26.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
25.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
25.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
25.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
24.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
23.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
23.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
23.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
23.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
22.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
22.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
22.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
21.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
21.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
21.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
21.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
20.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
20.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
20.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
20.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
20.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
20.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
19.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
19.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
19.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
19.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
19.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
18.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
18.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
18.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
18.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
18.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
18.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
18.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
18.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
18.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
18.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
18.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
18.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
18.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
18.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
18.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
17.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
17.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
17.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
17.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
17.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
17.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
17.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
17.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
17.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
16.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
16.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
16.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
16.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
16.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
16.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
16.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
16.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
16.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
15.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
15.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
15.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
15.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
15.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
15.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
15.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
15.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
15.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
15.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
15.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
14.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
14.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
14.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
14.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
14.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
14.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
14.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
14.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
14.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
13.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
13.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
13.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
13.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
13.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
13.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
13.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
13.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
13.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
13.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
13.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
13.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
13.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
13.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
12.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
12.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
12.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
12.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
12.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
12.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
12.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
12.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
12.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
12.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
12.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
12.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
12.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
12.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
11.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
11.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
11.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
11.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
11.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
11.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
11.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
11.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
11.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
11.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
11.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
11.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
11.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
10.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
10.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
10.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
10.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
10.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
10.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
10.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
10.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
10.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
10.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
10.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
10.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
9.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
9.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
9.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
9.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
9.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
9.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
9.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
9.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
9.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
9.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
9.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
9.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
9.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
9.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
8.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
8.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
8.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
8.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
8.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
8.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
7.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
7.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
7.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
7.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
7.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
7.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
7.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
7.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
6.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
6.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
5.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
5.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
5.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
5.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
5.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
5.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
5.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
4.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
4.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
4.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
4.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
4.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
3.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
3.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
3.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
3.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
3.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
2.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
2.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
2.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
2.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
2.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
2.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HSD17B7 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.9
Number of samples
231
Samples
Sample
Description
TPM
DO50815
0 years, male, NA, stage:3, alive, 150 days
108.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
55.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
51.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
50.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
49.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
48.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
48.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
46.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
46.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
45.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
43.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
43.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
43.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
42.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
42.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
38.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
37.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
36.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
35.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
35.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
35.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
35.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
35.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
34.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
33.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
33.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
32.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
32.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
32.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
31.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
31.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
31.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
30.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
30.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
29.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
29.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
29.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
29.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
28.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
27.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
27.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
26.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
26.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
26.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
26.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
25.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
25.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
25.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
25.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
25.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
25.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
25.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
24.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
23.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
23.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
23.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
23.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
23.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
23.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
23.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
23.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
22.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
22.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
22.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
22.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
22.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
22.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
21.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
21.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
21.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
20.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
20.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
20.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
20.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
20.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
19.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
19.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
19.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
19.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
19.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
19.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
19.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
19.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
19.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
18.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
18.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
18.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
18.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
18.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
17.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
17.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
17.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
17.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
17.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
17.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
17.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
17.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
16.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
16.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
16.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
16.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
16.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
16.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
16.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
16.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
16.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
16.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
16.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
15.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
15.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
15.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
15.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
15.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
15.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
14.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
14.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
14.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
14.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
14.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
14.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
14.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
14.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
13.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
13.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
13.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
13.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
13.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
13.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
13.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
13.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
13.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
12.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
12.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
12.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
12.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
12.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
12.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
12.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
12.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
12.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
12.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
12.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
12.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
11.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
11.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
11.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
11.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
11.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
11.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
11.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
10.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
10.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
10.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
9.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
9.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
8.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
8.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
8.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
8.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
8.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
8.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
8.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
8.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
8.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
7.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
7.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
7.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
7.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
7.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
7.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
6.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
6.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
6.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
6.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
6.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
6.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
5.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
5.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
5.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
5.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
4.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
4.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
4.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
4.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
4.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
3.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
3.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
2.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
435
Tumor
1.2
363
Tumor
1.1
361
Tumor
1.1
1043
Tumor
1.1
227
Tumor
1.0
477
Tumor
1.0
123
Tumor
1.0
445
Tumor
0.9
462
Normal
0.9
147
Tumor
0.8
1027
Tumor
0.7
967
Tumor
0.6
924
Normal
0.6
745
Tumor
0.6
714
Normal
0.6
746
Normal
0.6
436
Normal
0.6
517
Tumor
0.5
413
Tumor
0.5
724
Normal
0.5
465
Tumor
0.5
342
Normal
0.5
738
Normal
0.5
423
Tumor
0.5
231
Tumor
0.4
1022
Normal
0.4
921
Tumor
0.4
743
Tumor
0.4
648
Normal
0.4
466
Normal
0.4
298
Normal
0.4
391
Tumor
0.3
127
Tumor
0.3
882
Normal
0.3
715
Tumor
0.3
132
Normal
0.3
1031
Tumor
0.3
742
Normal
0.3
481
Tumor
0.3
857
Tumor
0.3
1044
Normal
0.3
938
Normal
0.3
1032
Normal
0.3
1046
Normal
0.3
366
Normal
0.3
411
Tumor
0.3
513
Tumor
0.3
228
Normal
0.3
647
Tumor
0.3
756
Normal
0.3
698
Normal
0.3
954
Normal
0.3
1021
Tumor
0.3
722
Normal
0.3
356
Normal
0.2
864
Normal
0.2
357
Tumor
0.2
778
Normal
0.2
414
Normal
0.2
863
Tumor
0.2
877
Tumor
0.2
314
Normal
0.2
862
Normal
0.2
1028
Normal
0.2
568
Normal
0.2
271
Tumor
0.2
332
Normal
0.2
616
Normal
0.2
642
Normal
0.2
641
Tumor
0.2
744
Normal
0.2
488
Normal
0.2
482
Normal
0.2
171
Tumor
0.2
172
Normal
0.2
866
Normal
0.2
286
Normal
0.2
816
Normal
0.2
518
Normal
0.2
1026
Normal
0.2
191
Tumor
0.2
557
Tumor
0.2
424
Normal
0.2
452
Normal
0.2
723
Tumor
0.2
824
Normal
0.2
232
Normal
0.2
977
Tumor
0.2
422
Normal
0.2
472
Normal
0.2
142
Normal
0.2
944
Normal
0.2
468
Normal
0.2
222
Normal
0.1
728
Normal
0.1
285
Tumor
0.1
696
Normal
0.1
443
Tumor
0.1
964
Normal
0.1
915
Tumor
0.1
432
Normal
0.1
851
Tumor
0.1
258
Normal
0.1
953
Tumor
0.1
426
Normal
0.1
861
Tumor
0.1
196
Normal
0.1
526
Normal
0.1
186
Normal
0.1
376
Normal
0.1
128
Normal
0.1
471
Tumor
0.1
464
Normal
0.1
448
Normal
0.1
965
Tumor
0.1
1014
Normal
0.1
686
Normal
0.1
564
Normal
0.1
867
Tumor
0.1
571
Tumor
0.1
456
Normal
0.1
113
Tumor
0.1
114
Normal
0.1
963
Tumor
0.1
956
Normal
0.1
618
Normal
0.1
671
Tumor
0.0
131
Tumor
0.0
818
Normal
0.0
554
Normal
0.0
912
Normal
0.0
331
Tumor
0.0
922
Normal
0.0
412
Normal
0.0
786
Normal
0.0
817
Tumor
0.0
572
Normal
0.0
628
Normal
0.0
976
Normal
0.0
878
Normal
0.0
262
Normal
0.0
218
Normal
0.0
474
Normal
0.0
284
Normal
0.0
975
Tumor
0.0
212
Normal
0.0
868
Normal
0.0
267
Tumor
0.0
968
Normal
0.0
112
Tumor
0.0
136
Normal
0.0
272
Normal
0.0
982
Normal
0.0
461
Tumor
0.0
162
Normal
0.0
148
Normal
0.0
858
Normal
0.0
983
Tumor
0.0
257
Tumor
0.0
365
Tumor
0.0
716
Normal
0.0
463
Tumor
0.0
567
Tumor
0.0
387
Tumor
0.0
214
Normal
0.0
328
Normal
0.0
354
Normal
0.0
558
Normal
-0.1
741
Tumor
-0.1
145
Tumor
-0.1
852
Normal
-0.1
514
Normal
-0.1
358
Normal
-0.1
785
Tumor
-0.1
627
Tumor
-0.1
883
Tumor
-0.1
664
Normal
-0.1
138
Normal
-0.1
428
Normal
-0.1
187
Tumor
-0.1
217
Tumor
-0.1
1016
Normal
-0.1
528
Normal
-0.1
261
Tumor
-0.1
394
Normal
-0.1
433
Tumor
-0.1
446
Normal
-0.1
484
Normal
-0.1
224
Normal
-0.1
695
Tumor
-0.1
1015
Tumor
-0.1
966
Normal
-0.1
388
Normal
-0.1
278
Normal
-0.1
957
Tumor
-0.1
874
Normal
-0.1
926
Normal
-0.1
1042
Normal
-0.1
1025
Tumor
-0.1
494
Normal
-0.1
884
Normal
-0.1
615
Tumor
-0.1
434
Normal
-0.1
384
Normal
-0.1
665
Tumor
-0.1
111
Normal
-0.2
666
Normal
-0.2
546
Normal
-0.2
161
Tumor
-0.2
1013
Tumor
-0.2
914
Normal
-0.2
574
Normal
-0.2
918
Normal
-0.2
362
Normal
-0.2
563
Tumor
-0.2
188
Normal
-0.2
534
Normal
-0.2
662
Normal
-0.2
135
Tumor
-0.2
392
Normal
-0.2
277
Tumor
-0.2
141
Tumor
-0.2
952
Normal
-0.2
865
Tumor
-0.2
537
Tumor
-0.2
1041
Tumor
-0.2
385
Tumor
-0.2
416
Normal
-0.2
223
Tumor
-0.2
755
Tumor
-0.2
341
Tumor
-0.2
352
Normal
-0.2
327
Tumor
-0.2
636
Normal
-0.2
923
Tumor
-0.2
978
Normal
-0.2
713
Tumor
-0.3
312
Normal
-0.3
221
Tumor
-0.3
124
Normal
-0.3
516
Normal
-0.3
873
Tumor
-0.3
955
Tumor
-0.3
483
Tumor
-0.3
515
Tumor
-0.3
386
Normal
-0.3
126
Normal
-0.3
421
Tumor
-0.3
553
Tumor
-0.3
523
Tumor
-0.3
344
Normal
-0.3
451
Tumor
-0.4
492
Normal
-0.4
663
Tumor
-0.4
478
Normal
-0.4
958
Normal
-0.4
573
Tumor
-0.4
427
Tumor
-0.4
146
Normal
-0.4
984
Normal
-0.4
727
Tumor
-0.4
185
Tumor
-0.4
364
Normal
-0.4
355
Tumor
-0.4
368
Normal
-0.4
911
Tumor
-0.4
881
Tumor
-0.5
527
Tumor
-0.5
473
Tumor
-0.5
396
Normal
-0.5
213
Tumor
-0.5
916
Normal
-0.5
137
Tumor
-0.5
672
Normal
-0.5
777
Tumor
-0.5
313
Tumor
-0.6
351
Tumor
-0.6
455
Tumor
-0.6
444
Normal
-0.6
415
Tumor
-0.6
635
Tumor
-0.6
951
Tumor
-0.6
425
Tumor
-0.6
617
Tumor
-0.6
823
Tumor
-0.6
661
Tumor
-0.6
813
Tumor
-0.6
525
Tumor
-0.6
487
Tumor
-0.6
431
Tumor
-0.7
491
Tumor
-0.7
538
Normal
-0.7
353
Tumor
-0.7
447
Tumor
-0.7
533
Tumor
-0.7
498
Normal
-0.7
268
Normal
-0.7
192
Normal
-0.7
815
Tumor
-0.7
721
Tumor
-0.8
524
Normal
-0.8
814
Normal
-0.8
375
Tumor
-0.8
981
Tumor
-0.8
535
Tumor
-0.8
497
Tumor
-0.8
685
Tumor
-0.8
195
Tumor
-0.9
393
Tumor
-0.9
467
Tumor
-0.9
343
Tumor
-0.9
697
Tumor
-0.9
913
Tumor
-0.9
737
Tumor
-0.9
493
Tumor
-0.9
125
Tumor
-0.9
297
Tumor
-1.0
367
Tumor
-1.0
1045
Tumor
-1.0
536
Normal
-1.0
937
Tumor
-1.0
283
Tumor
-1.1
545
Tumor
-1.2
943
Tumor
-1.2
383
Tumor
-1.2
211
Tumor
-1.2
311
Tumor
-1.4
395
Tumor
-1.5
917
Tumor
-1.5
925
Tumor
-1.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
