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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NUP210 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
50.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
41.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
37.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
31.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
30.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
28.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
27.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
27.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
27.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
27.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
26.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
26.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
25.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
25.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
24.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
24.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
23.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
22.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
22.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
22.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
22.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
22.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
22.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
21.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
21.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
21.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
20.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
20.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
20.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
20.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
19.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
19.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
19.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
19.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
19.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
18.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
18.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
17.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
17.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
17.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
16.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
16.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
15.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
15.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
15.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
15.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
14.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
14.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
14.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
14.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
14.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
13.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
13.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
13.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
13.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
13.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
13.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
13.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
13.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
13.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
13.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
13.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
13.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
12.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
12.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
12.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
12.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
12.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
12.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
12.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
12.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
12.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
12.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
12.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
12.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
12.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
12.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
11.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
11.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
11.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
11.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
11.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
11.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
11.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
11.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
11.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
11.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
10.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
10.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
10.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
9.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
9.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
9.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
9.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
9.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
9.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
9.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
9.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
9.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
8.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
8.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
8.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
8.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
8.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
8.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
8.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
8.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
8.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
8.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
8.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
8.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
8.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
8.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
7.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
7.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
7.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
7.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
7.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
7.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
7.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
6.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
6.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
6.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
6.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
6.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
6.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
6.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
5.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
5.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
5.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
5.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
5.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
5.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
5.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
5.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
5.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
5.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
4.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
4.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
4.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
4.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
4.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
4.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
4.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
4.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
4.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
3.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
3.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
3.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
3.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
2.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
2.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
2.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
2.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
1.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
1.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NUP210 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.8
Number of samples
231
Samples
Sample
Description
TPM
DO48720
0 years, female, NA, stage:2, alive, 570 days
102.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
55.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
47.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
45.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
43.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
33.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
32.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
28.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
28.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
27.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
26.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
26.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
25.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
23.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
23.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
23.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
22.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
22.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
22.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
22.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
22.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
22.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
21.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
21.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
21.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
20.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
20.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
20.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
20.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
20.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
20.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
19.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
19.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
19.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
18.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
18.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
18.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
18.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
17.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
17.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
17.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
17.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
17.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
16.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
16.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
16.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
16.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
15.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
15.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
14.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
14.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
14.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
14.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
14.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
14.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
13.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
13.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
13.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
13.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
13.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
13.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
13.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
12.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
12.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
12.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
12.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
12.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
12.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
12.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
11.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
11.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
11.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
11.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
11.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
11.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
11.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
11.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
11.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
11.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
11.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
11.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
10.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
10.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
10.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
10.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
10.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
10.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
10.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
10.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
10.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
10.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
10.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
10.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
10.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
9.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
9.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
9.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
9.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
9.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
9.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
9.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
8.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
8.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
8.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
8.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
8.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
7.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
7.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
7.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
7.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
7.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
7.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
7.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
7.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
6.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
6.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
6.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
6.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
6.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
6.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
6.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
6.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
6.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
5.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
5.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
5.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
5.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
5.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
5.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
5.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
5.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
4.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
4.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
4.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
4.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
4.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
4.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
4.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
4.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
4.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
3.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
3.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
3.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
3.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
3.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
3.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
2.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
1.3
351
Tumor
1.1
131
Tumor
1.0
473
Tumor
0.9
171
Tumor
0.8
877
Tumor
0.8
343
Tumor
0.8
411
Tumor
0.8
467
Tumor
0.8
491
Tumor
0.8
523
Tumor
0.7
231
Tumor
0.7
671
Tumor
0.7
1013
Tumor
0.7
425
Tumor
0.7
663
Tumor
0.7
267
Tumor
0.6
1041
Tumor
0.6
957
Tumor
0.6
125
Tumor
0.6
395
Tumor
0.6
463
Tumor
0.5
277
Tumor
0.5
965
Tumor
0.5
135
Tumor
0.5
363
Tumor
0.5
427
Tumor
0.5
953
Tumor
0.5
573
Tumor
0.5
647
Tumor
0.5
737
Tumor
0.5
227
Tumor
0.5
1021
Tumor
0.5
545
Tumor
0.5
331
Tumor
0.4
925
Tumor
0.4
367
Tumor
0.4
815
Tumor
0.4
497
Tumor
0.4
221
Tumor
0.4
685
Tumor
0.4
724
Normal
0.4
557
Tumor
0.4
715
Tumor
0.4
727
Tumor
0.4
921
Tumor
0.4
285
Tumor
0.4
963
Tumor
0.4
777
Tumor
0.3
641
Tumor
0.3
487
Tumor
0.3
385
Tumor
0.3
271
Tumor
0.3
443
Tumor
0.3
943
Tumor
0.3
567
Tumor
0.3
483
Tumor
0.3
313
Tumor
0.3
977
Tumor
0.3
785
Tumor
0.3
951
Tumor
0.3
533
Tumor
0.3
1043
Tumor
0.3
915
Tumor
0.3
863
Tumor
0.3
865
Tumor
0.3
123
Tumor
0.3
161
Tumor
0.2
983
Tumor
0.2
1025
Tumor
0.2
297
Tumor
0.2
195
Tumor
0.2
881
Tumor
0.2
665
Tumor
0.2
355
Tumor
0.2
861
Tumor
0.2
375
Tumor
0.2
393
Tumor
0.2
525
Tumor
0.2
937
Tumor
0.2
361
Tumor
0.1
187
Tumor
0.1
917
Tumor
0.1
455
Tumor
0.1
413
Tumor
0.1
515
Tumor
0.1
481
Tumor
0.1
471
Tumor
0.1
1031
Tumor
0.1
365
Tumor
0.1
517
Tumor
0.1
357
Tumor
0.1
421
Tumor
0.1
741
Tumor
0.1
477
Tumor
0.1
913
Tumor
0.1
923
Tumor
0.1
755
Tumor
0.1
112
Tumor
0.1
563
Tumor
0.1
185
Tumor
0.1
857
Tumor
0.0
535
Tumor
0.0
162
Normal
0.0
394
Normal
0.0
911
Tumor
0.0
261
Tumor
0.0
127
Tumor
0.0
257
Tumor
0.0
213
Tumor
0.0
172
Normal
0.0
431
Tumor
0.0
392
Normal
0.0
451
Tumor
0.0
661
Tumor
0.0
433
Tumor
0.0
615
Tumor
0.0
1014
Normal
0.0
465
Tumor
0.0
858
Normal
0.0
883
Tumor
0.0
376
Normal
0.0
113
Tumor
0.0
534
Normal
0.0
217
Tumor
0.0
756
Normal
0.0
721
Tumor
0.0
922
Normal
0.0
695
Tumor
0.0
984
Normal
0.0
524
Normal
0.0
435
Tumor
0.0
147
Tumor
0.0
814
Normal
0.0
342
Normal
-0.1
327
Tumor
-0.1
492
Normal
-0.1
414
Normal
-0.1
482
Normal
-0.1
466
Normal
-0.1
211
Tumor
-0.1
912
Normal
-0.1
314
Normal
-0.1
464
Normal
-0.1
926
Normal
-0.1
744
Normal
-0.1
186
Normal
-0.1
142
Normal
-0.1
462
Normal
-0.1
191
Tumor
-0.1
428
Normal
-0.1
352
Normal
-0.1
484
Normal
-0.1
356
Normal
-0.1
975
Tumor
-0.1
813
Tumor
-0.1
222
Normal
-0.1
426
Normal
-0.1
472
Normal
-0.1
358
Normal
-0.1
436
Normal
-0.1
954
Normal
-0.1
686
Normal
-0.1
513
Tumor
-0.1
452
Normal
-0.1
146
Normal
-0.1
353
Tumor
-0.1
964
Normal
-0.1
824
Normal
-0.1
148
Normal
-0.1
786
Normal
-0.1
461
Tumor
-0.1
446
Normal
-0.1
518
Normal
-0.1
538
Normal
-0.1
938
Normal
-0.1
432
Normal
-0.1
488
Normal
-0.1
423
Tumor
-0.1
364
Normal
-0.1
526
Normal
-0.1
272
Normal
-0.1
124
Normal
-0.2
196
Normal
-0.2
387
Tumor
-0.2
396
Normal
-0.2
1046
Normal
-0.2
132
Normal
-0.2
412
Normal
-0.2
136
Normal
-0.2
424
Normal
-0.2
1045
Tumor
-0.2
746
Normal
-0.2
742
Normal
-0.2
778
Normal
-0.2
636
Normal
-0.2
648
Normal
-0.2
128
Normal
-0.2
628
Normal
-0.2
664
Normal
-0.2
114
Normal
-0.2
388
Normal
-0.2
528
Normal
-0.2
258
Normal
-0.2
627
Tumor
-0.2
278
Normal
-0.2
553
Tumor
-0.2
867
Tumor
-0.2
341
Tumor
-0.2
126
Normal
-0.2
268
Normal
-0.2
223
Tumor
-0.2
1015
Tumor
-0.2
527
Tumor
-0.2
516
Normal
-0.2
456
Normal
-0.2
818
Normal
-0.2
478
Normal
-0.2
568
Normal
-0.2
138
Normal
-0.2
422
Normal
-0.2
546
Normal
-0.2
362
Normal
-0.2
332
Normal
-0.2
344
Normal
-0.2
434
Normal
-0.2
672
Normal
-0.2
1016
Normal
-0.2
368
Normal
-0.2
474
Normal
-0.2
192
Normal
-0.2
416
Normal
-0.2
728
Normal
-0.2
111
Normal
-0.2
968
Normal
-0.2
298
Normal
-0.2
514
Normal
-0.2
976
Normal
-0.2
823
Tumor
-0.2
262
Normal
-0.2
944
Normal
-0.2
1032
Normal
-0.2
978
Normal
-0.2
952
Normal
-0.2
354
Normal
-0.2
882
Normal
-0.2
571
Tumor
-0.2
868
Normal
-0.2
866
Normal
-0.2
444
Normal
-0.2
878
Normal
-0.2
386
Normal
-0.2
468
Normal
-0.2
616
Normal
-0.2
738
Normal
-0.2
918
Normal
-0.2
564
Normal
-0.3
328
Normal
-0.3
536
Normal
-0.3
498
Normal
-0.3
188
Normal
-0.3
618
Normal
-0.3
212
Normal
-0.3
662
Normal
-0.3
862
Normal
-0.3
574
Normal
-0.3
232
Normal
-0.3
666
Normal
-0.3
218
Normal
-0.3
415
Tumor
-0.3
384
Normal
-0.3
572
Normal
-0.3
916
Normal
-0.3
914
Normal
-0.3
696
Normal
-0.3
494
Normal
-0.3
448
Normal
-0.3
723
Tumor
-0.3
311
Tumor
-0.3
966
Normal
-0.3
884
Normal
-0.3
214
Normal
-0.3
286
Normal
-0.3
137
Tumor
-0.3
141
Tumor
-0.3
958
Normal
-0.3
714
Normal
-0.3
924
Normal
-0.3
1042
Normal
-0.3
228
Normal
-0.3
864
Normal
-0.3
558
Normal
-0.3
982
Normal
-0.3
447
Tumor
-0.3
1026
Normal
-0.3
956
Normal
-0.3
716
Normal
-0.3
366
Normal
-0.3
874
Normal
-0.3
224
Normal
-0.3
383
Tumor
-0.3
284
Normal
-0.3
955
Tumor
-0.3
873
Tumor
-0.3
312
Normal
-0.3
697
Tumor
-0.3
1028
Normal
-0.4
493
Tumor
-0.4
817
Tumor
-0.4
1022
Normal
-0.4
617
Tumor
-0.4
554
Normal
-0.4
145
Tumor
-0.4
698
Normal
-0.4
642
Normal
-0.4
851
Tumor
-0.4
445
Tumor
-0.4
981
Tumor
-0.4
391
Tumor
-0.4
713
Tumor
-0.4
722
Normal
-0.5
283
Tumor
-0.5
852
Normal
-0.5
1044
Normal
-0.5
816
Normal
-0.5
537
Tumor
-0.6
635
Tumor
-0.6
1027
Tumor
-0.6
967
Tumor
-0.8
745
Tumor
-0.9
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
