We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC6A11 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
2.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
63.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
52.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
35.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
34.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
31.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
25.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
25.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
24.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
21.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
20.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
20.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
18.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
18.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
18.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
17.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
17.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
17.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
16.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
16.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
16.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
15.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
14.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
14.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
13.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
13.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
12.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
12.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
12.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
11.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
11.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
10.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
9.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
9.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
8.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
8.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
7.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
6.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
5.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
5.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
5.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
5.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
4.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
4.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
3.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
3.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
3.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
3.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
3.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
3.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
2.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
2.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
2.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
2.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
2.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
2.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
2.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
2.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
1.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
1.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
1.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
1.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
1.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
1.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
1.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
1.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
1.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
1.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
1.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
1.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
0.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
0.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
0.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
0.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
0.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
0.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
0.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
0.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
0.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
0.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
0.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
0.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
0.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
0.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
0.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC6A11 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
1.7
Number of samples
231
Samples
Sample
Description
TPM
DO45193
0 years, female, NA, stage:4, dead, 120 days
51.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
31.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
17.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
17.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
17.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
15.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
14.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
9.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
9.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
6.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
6.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
5.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
5.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
5.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
5.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
4.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
4.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
4.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
4.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
4.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
4.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
3.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
3.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
3.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
3.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
3.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
3.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
3.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
3.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
2.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
2.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
2.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
2.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
2.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
2.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
2.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
2.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
2.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
2.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
2.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
2.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
2.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
2.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
2.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
1.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
1.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
1.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
1.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
1.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
1.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
1.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
1.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
1.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
1.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
1.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
1.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
1.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
1.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
1.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
1.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
1.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
1.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
1.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
0.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
0.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
0.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
0.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
0.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
0.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
0.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
0.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
0.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
0.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
0.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
0.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
0.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
0.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
0.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
0.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
0.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
0.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
0.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
0.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
0.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
0.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
0.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
0.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
0.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
0.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
0.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
0.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
0.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
0.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
0.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
0.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
0.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
0.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
0.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
0.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
0.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
0.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
0.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
0.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
0.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
0.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
0.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
0.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
0.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
0.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
0.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
0.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
0.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
0.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
227
Tumor
3.9
363
Tumor
3.2
713
Tumor
2.8
285
Tumor
2.5
533
Tumor
2.2
221
Tumor
2.1
387
Tumor
2.0
473
Tumor
1.8
471
Tumor
1.8
131
Tumor
1.8
975
Tumor
1.7
435
Tumor
1.7
1025
Tumor
1.5
1021
Tumor
1.5
271
Tumor
1.5
813
Tumor
1.4
967
Tumor
1.3
1031
Tumor
1.3
743
Tumor
1.2
1043
Tumor
1.2
351
Tumor
1.2
223
Tumor
1.1
483
Tumor
1.1
877
Tumor
1.0
331
Tumor
1.0
881
Tumor
1.0
745
Tumor
1.0
391
Tumor
1.0
867
Tumor
0.9
727
Tumor
0.9
228
Normal
0.9
721
Tumor
0.9
571
Tumor
0.9
445
Tumor
0.9
956
Normal
0.8
697
Tumor
0.7
814
Normal
0.7
488
Normal
0.7
362
Normal
0.7
492
Normal
0.7
864
Normal
0.6
413
Tumor
0.6
722
Normal
0.6
866
Normal
0.6
874
Normal
0.6
963
Tumor
0.6
128
Normal
0.6
685
Tumor
0.5
498
Normal
0.5
557
Tumor
0.5
494
Normal
0.4
526
Normal
0.4
424
Normal
0.4
212
Normal
0.4
951
Tumor
0.4
342
Normal
0.4
516
Normal
0.4
852
Normal
0.4
1044
Normal
0.4
231
Tumor
0.4
862
Normal
0.4
416
Normal
0.4
361
Tumor
0.4
393
Tumor
0.4
497
Tumor
0.4
126
Normal
0.3
777
Tumor
0.3
944
Normal
0.3
546
Normal
0.3
883
Tumor
0.3
568
Normal
0.3
1042
Normal
0.3
958
Normal
0.3
412
Normal
0.2
272
Normal
0.2
284
Normal
0.2
364
Normal
0.2
915
Tumor
0.2
354
Normal
0.2
388
Normal
0.2
332
Normal
0.2
938
Normal
0.2
452
Normal
0.2
357
Tumor
0.2
224
Normal
0.2
366
Normal
0.2
493
Tumor
0.2
518
Normal
0.2
924
Normal
0.2
451
Tumor
0.2
921
Tumor
0.1
574
Normal
0.1
428
Normal
0.1
431
Tumor
0.1
756
Normal
0.1
698
Normal
0.1
422
Normal
0.1
262
Normal
0.1
484
Normal
0.1
448
Normal
0.1
425
Tumor
0.1
918
Normal
0.1
353
Tumor
0.1
737
Tumor
0.1
114
Normal
0.1
567
Tumor
0.1
861
Tumor
0.1
297
Tumor
0.0
358
Normal
0.0
124
Normal
0.0
214
Normal
0.0
525
Tumor
0.0
468
Normal
0.0
344
Normal
0.0
976
Normal
0.0
816
Normal
0.0
312
Normal
-0.1
426
Normal
-0.1
352
Normal
-0.1
851
Tumor
-0.1
111
Normal
-0.1
916
Normal
-0.1
385
Tumor
-0.1
414
Normal
-0.1
443
Tumor
-0.1
558
Normal
-0.1
127
Tumor
-0.1
268
Normal
-0.1
434
Normal
-0.1
415
Tumor
-0.1
824
Normal
-0.1
277
Tumor
-0.1
716
Normal
-0.1
138
Normal
-0.1
466
Normal
-0.1
436
Normal
-0.1
878
Normal
-0.1
662
Normal
-0.1
823
Tumor
-0.1
815
Tumor
-0.2
447
Tumor
-0.2
341
Tumor
-0.2
966
Normal
-0.2
356
Normal
-0.2
386
Normal
-0.2
665
Tumor
-0.2
311
Tumor
-0.2
911
Tumor
-0.2
328
Normal
-0.2
278
Normal
-0.2
914
Normal
-0.2
123
Tumor
-0.2
648
Normal
-0.2
868
Normal
-0.2
514
Normal
-0.3
517
Tumor
-0.3
314
Normal
-0.3
421
Tumor
-0.3
286
Normal
-0.3
523
Tumor
-0.3
563
Tumor
-0.3
258
Normal
-0.3
195
Tumor
-0.3
433
Tumor
-0.3
1022
Normal
-0.3
545
Tumor
-0.3
137
Tumor
-0.3
313
Tumor
-0.3
478
Normal
-0.3
696
Normal
-0.3
446
Normal
-0.3
882
Normal
-0.4
112
Tumor
-0.4
232
Normal
-0.4
395
Tumor
-0.4
192
Normal
-0.4
671
Tumor
-0.4
817
Tumor
-0.4
355
Tumor
-0.4
298
Normal
-0.4
818
Normal
-0.4
456
Normal
-0.4
464
Normal
-0.4
524
Normal
-0.4
327
Tumor
-0.5
912
Normal
-0.5
572
Normal
-0.5
513
Tumor
-0.5
113
Tumor
-0.5
884
Normal
-0.5
714
Normal
-0.5
564
Normal
-0.5
444
Normal
-0.5
376
Normal
-0.5
686
Normal
-0.6
922
Normal
-0.6
873
Tumor
-0.6
968
Normal
-0.6
474
Normal
-0.6
1046
Normal
-0.6
534
Normal
-0.6
744
Normal
-0.6
746
Normal
-0.6
538
Normal
-0.6
217
Tumor
-0.6
343
Tumor
-0.6
367
Tumor
-0.6
432
Normal
-0.6
742
Normal
-0.7
146
Normal
-0.7
738
Normal
-0.7
964
Normal
-0.7
196
Normal
-0.7
427
Tumor
-0.7
487
Tumor
-0.7
384
Normal
-0.7
857
Tumor
-0.7
423
Tumor
-0.8
786
Normal
-0.8
926
Normal
-0.8
858
Normal
-0.8
647
Tumor
-0.8
394
Normal
-0.8
222
Normal
-0.8
368
Normal
-0.8
383
Tumor
-0.8
778
Normal
-0.8
537
Tumor
-0.8
536
Normal
-0.8
528
Normal
-0.8
396
Normal
-0.8
943
Tumor
-0.8
491
Tumor
-0.8
515
Tumor
-0.8
142
Normal
-0.8
191
Tumor
-0.8
1032
Normal
-0.9
463
Tumor
-0.9
1027
Tumor
-0.9
965
Tumor
-0.9
375
Tumor
-0.9
125
Tumor
-0.9
715
Tumor
-0.9
462
Normal
-0.9
664
Normal
-0.9
472
Normal
-1.0
755
Tumor
-1.0
467
Tumor
-1.0
917
Tumor
-1.0
1026
Normal
-1.0
411
Tumor
-1.0
666
Normal
-1.0
573
Tumor
-1.0
455
Tumor
-1.0
1045
Tumor
-1.0
261
Tumor
-1.0
957
Tumor
-1.1
211
Tumor
-1.1
672
Normal
-1.1
365
Tumor
-1.1
392
Normal
-1.1
741
Tumor
-1.1
145
Tumor
-1.1
136
Normal
-1.1
461
Tumor
-1.1
554
Normal
-1.1
1041
Tumor
-1.2
218
Normal
-1.2
132
Normal
-1.2
1028
Normal
-1.2
954
Normal
-1.2
527
Tumor
-1.2
952
Normal
-1.3
955
Tumor
-1.3
925
Tumor
-1.3
213
Tumor
-1.3
913
Tumor
-1.3
257
Tumor
-1.4
923
Tumor
-1.4
785
Tumor
-1.4
723
Tumor
-1.4
267
Tumor
-1.4
728
Normal
-1.4
695
Tumor
-1.4
535
Tumor
-1.5
863
Tumor
-1.5
724
Normal
-1.5
465
Tumor
-1.5
661
Tumor
-1.5
865
Tumor
-1.5
553
Tumor
-1.5
663
Tumor
-1.6
477
Tumor
-1.6
141
Tumor
-1.7
953
Tumor
-1.7
937
Tumor
-1.9
135
Tumor
-2.0
283
Tumor
-2.1
481
Tumor
-3.2
482
Normal
-4.1
147
Tumor
N/A
148
Normal
N/A
1016
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
1013
Tumor
N/A
161
Tumor
N/A
162
Normal
N/A
171
Tumor
N/A
172
Normal
N/A
977
Tumor
N/A
615
Tumor
N/A
978
Normal
N/A
616
Normal
N/A
617
Tumor
N/A
618
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
981
Tumor
N/A
982
Normal
N/A
983
Tumor
N/A
984
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
635
Tumor
N/A
636
Normal
N/A
641
Tumor
N/A
642
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
