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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TRIM21 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
43.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
35.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
32.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
30.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
29.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
27.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
26.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
25.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
25.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
24.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
23.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
23.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
23.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
22.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
22.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
22.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
22.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
22.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
21.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
21.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
20.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
20.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
20.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
20.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
20.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
20.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
19.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
19.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
19.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
19.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
19.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
19.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
19.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
18.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
18.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
18.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
18.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
18.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
18.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
18.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
18.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
18.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
17.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
17.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
17.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
17.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
17.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
17.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
17.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
17.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
17.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
17.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
17.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
16.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
16.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
16.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
16.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
16.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
16.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
16.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
16.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
16.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
16.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
15.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
15.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
15.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
15.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
15.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
15.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
15.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
15.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
15.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
15.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
15.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
15.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
15.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
15.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
15.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
15.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
15.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
15.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
15.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
15.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
15.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
14.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
14.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
14.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
14.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
14.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
14.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
14.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
14.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
14.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
14.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
14.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
14.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
14.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
14.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
14.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
14.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
14.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
14.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
14.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
14.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
14.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
14.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
14.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
13.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
13.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
13.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
13.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
13.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
13.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
13.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
13.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
13.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
13.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
13.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
13.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
13.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
12.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
12.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
12.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
12.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
12.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
12.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
12.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
12.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
12.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
12.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
12.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
12.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
12.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
12.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
12.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
12.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
12.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
12.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
11.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
11.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
11.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
11.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
11.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
11.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
11.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
11.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
11.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
11.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
11.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
11.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
11.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
11.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
11.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
11.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
11.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
11.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
11.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
11.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
11.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
11.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
11.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
11.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
11.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
10.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
10.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
10.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
10.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
10.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
10.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
10.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
10.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
10.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
10.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
9.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
9.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
9.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
9.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
9.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
9.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
9.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
9.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
9.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
8.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
8.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
8.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
8.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
8.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
8.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
8.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
8.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
8.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
8.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
8.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
8.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
7.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
7.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
7.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
7.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
7.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
7.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
7.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
6.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
6.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
6.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
6.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
6.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
6.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
5.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
5.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
5.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
5.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
5.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
5.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
4.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
4.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
4.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
4.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
4.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
3.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
2.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
2.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TRIM21 is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.3
Number of samples
231
Samples
Sample
Description
TPM
DO23512
0 years, male, NA, stage:1, alive, 1260 days
31.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
28.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
26.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
24.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
23.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
22.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
21.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
20.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
20.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
20.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
19.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
19.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
18.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
17.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
17.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
17.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
17.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
17.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
17.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
16.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
16.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
16.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
16.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
16.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
16.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
16.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
16.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
15.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
15.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
15.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
15.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
15.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
15.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
15.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
15.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
15.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
14.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
14.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
14.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
14.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
14.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
14.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
14.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
14.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
14.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
13.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
13.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
13.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
13.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
13.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
13.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
13.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
13.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
13.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
13.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
13.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
13.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
12.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
12.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
12.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
12.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
12.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
12.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
12.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
12.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
12.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
12.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
12.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
12.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
11.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
11.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
11.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
11.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
11.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
11.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
11.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
11.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
11.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
11.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
11.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
11.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
10.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
10.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
10.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
10.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
10.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
9.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
9.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
9.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
9.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
9.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
9.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
9.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
9.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
9.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
9.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
9.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
8.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
8.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
8.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
8.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
8.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
8.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
8.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
8.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
8.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
8.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
8.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
8.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
7.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
7.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
7.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
7.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
7.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
7.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
7.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
6.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
6.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
6.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
6.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
6.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
6.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
6.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
6.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
5.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
5.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
5.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
5.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
5.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
5.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
5.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
5.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
4.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
4.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
4.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
4.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
4.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
4.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
4.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
4.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
3.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
3.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
3.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
3.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
3.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
3.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
2.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
2.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
2.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
2.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
2.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
1.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
777
Tumor
1.1
737
Tumor
1.1
857
Tumor
1.0
533
Tumor
1.0
113
Tumor
0.9
913
Tumor
0.8
262
Normal
0.8
434
Normal
0.7
141
Tumor
0.7
861
Tumor
0.7
873
Tumor
0.7
188
Normal
0.7
1015
Tumor
0.7
455
Tumor
0.6
978
Normal
0.6
863
Tumor
0.6
883
Tumor
0.6
966
Normal
0.6
937
Tumor
0.6
627
Tumor
0.6
955
Tumor
0.6
515
Tumor
0.6
393
Tumor
0.5
755
Tumor
0.5
195
Tumor
0.5
327
Tumor
0.5
126
Normal
0.5
267
Tumor
0.5
513
Tumor
0.5
851
Tumor
0.5
343
Tumor
0.5
917
Tumor
0.5
536
Normal
0.5
663
Tumor
0.5
884
Normal
0.5
147
Tumor
0.5
814
Normal
0.4
647
Tumor
0.4
268
Normal
0.4
212
Normal
0.4
451
Tumor
0.4
953
Tumor
0.4
213
Tumor
0.4
416
Normal
0.4
257
Tumor
0.4
527
Tumor
0.4
557
Tumor
0.4
362
Normal
0.4
528
Normal
0.4
461
Tumor
0.4
272
Normal
0.4
467
Tumor
0.4
341
Tumor
0.4
956
Normal
0.4
211
Tumor
0.4
432
Normal
0.4
1031
Tumor
0.4
558
Normal
0.3
952
Normal
0.3
137
Tumor
0.3
666
Normal
0.3
492
Normal
0.3
563
Tumor
0.3
635
Tumor
0.3
311
Tumor
0.3
146
Normal
0.3
411
Tumor
0.3
286
Normal
0.3
516
Normal
0.3
1013
Tumor
0.3
1043
Tumor
0.3
222
Normal
0.3
136
Normal
0.3
922
Normal
0.3
976
Normal
0.3
224
Normal
0.3
125
Tumor
0.3
524
Normal
0.3
514
Normal
0.3
187
Tumor
0.3
218
Normal
0.3
914
Normal
0.3
386
Normal
0.3
916
Normal
0.3
628
Normal
0.3
138
Normal
0.3
926
Normal
0.3
383
Tumor
0.3
617
Tumor
0.3
874
Normal
0.3
1028
Normal
0.3
724
Normal
0.2
423
Tumor
0.2
957
Tumor
0.2
415
Tumor
0.2
943
Tumor
0.2
443
Tumor
0.2
344
Normal
0.2
478
Normal
0.2
414
Normal
0.2
728
Normal
0.2
756
Normal
0.2
366
Normal
0.2
1032
Normal
0.2
493
Tumor
0.2
114
Normal
0.2
721
Tumor
0.2
258
Normal
0.2
392
Normal
0.2
284
Normal
0.2
662
Normal
0.2
1022
Normal
0.2
865
Tumor
0.2
396
Normal
0.2
745
Tumor
0.2
192
Normal
0.2
283
Tumor
0.2
384
Normal
0.2
722
Normal
0.2
191
Tumor
0.2
214
Normal
0.2
217
Tumor
0.2
523
Tumor
0.2
312
Normal
0.2
223
Tumor
0.2
365
Tumor
0.2
446
Normal
0.2
664
Normal
0.2
982
Normal
0.2
128
Normal
0.2
518
Normal
0.1
538
Normal
0.1
672
Normal
0.1
554
Normal
0.1
1045
Tumor
0.1
456
Normal
0.1
228
Normal
0.1
428
Normal
0.1
185
Tumor
0.1
918
Normal
0.1
925
Tumor
0.1
135
Tumor
0.1
535
Tumor
0.1
525
Tumor
0.1
162
Normal
0.1
232
Normal
0.1
482
Normal
0.1
394
Normal
0.1
111
Normal
0.1
954
Normal
0.1
462
Normal
0.1
813
Tumor
0.1
498
Normal
0.1
938
Normal
0.1
422
Normal
0.1
145
Tumor
0.1
444
Normal
0.1
161
Tumor
0.1
297
Tumor
0.1
1016
Normal
0.1
468
Normal
0.1
142
Normal
0.1
564
Normal
0.1
472
Normal
0.1
852
Normal
0.1
574
Normal
0.1
526
Normal
0.1
361
Tumor
0.1
882
Normal
0.1
716
Normal
0.1
738
Normal
0.1
951
Tumor
0.1
958
Normal
0.1
132
Normal
0.1
448
Normal
0.1
196
Normal
0.1
964
Normal
0.1
474
Normal
0.1
376
Normal
0.1
436
Normal
0.1
357
Tumor
0.1
412
Normal
0.1
616
Normal
0.1
698
Normal
0.1
816
Normal
0.1
358
Normal
0.1
696
Normal
0.0
984
Normal
0.0
433
Tumor
0.0
464
Normal
0.0
452
Normal
0.0
975
Tumor
0.0
148
Normal
0.0
648
Normal
0.0
466
Normal
0.0
572
Normal
0.0
778
Normal
0.0
1014
Normal
0.0
944
Normal
0.0
1044
Normal
0.0
421
Tumor
0.0
546
Normal
0.0
862
Normal
0.0
427
Tumor
0.0
494
Normal
0.0
388
Normal
0.0
124
Normal
0.0
278
Normal
0.0
686
Normal
0.0
714
Normal
0.0
1021
Tumor
0.0
352
Normal
0.0
642
Normal
0.0
568
Normal
0.0
368
Normal
0.0
864
Normal
0.0
471
Tumor
0.0
786
Normal
0.0
534
Normal
0.0
858
Normal
0.0
868
Normal
0.0
963
Tumor
0.0
277
Tumor
0.0
186
Normal
0.0
824
Normal
0.0
867
Tumor
0.0
823
Tumor
0.0
878
Normal
0.0
713
Tumor
0.0
744
Normal
0.0
465
Tumor
0.0
742
Normal
0.0
723
Tumor
0.0
364
Normal
-0.1
328
Normal
-0.1
332
Normal
-0.1
391
Tumor
-0.1
356
Normal
-0.1
1027
Tumor
-0.1
481
Tumor
-0.1
314
Normal
-0.1
924
Normal
-0.1
424
Normal
-0.1
1046
Normal
-0.1
912
Normal
-0.1
618
Normal
-0.1
298
Normal
-0.1
172
Normal
-0.1
915
Tumor
-0.1
695
Tumor
-0.1
261
Tumor
-0.1
426
Normal
-0.1
385
Tumor
-0.1
1042
Normal
-0.1
484
Normal
-0.1
866
Normal
-0.1
487
Tumor
-0.1
488
Normal
-0.1
968
Normal
-0.1
661
Tumor
-0.1
1026
Normal
-0.2
981
Tumor
-0.2
881
Tumor
-0.2
818
Normal
-0.2
746
Normal
-0.2
375
Tumor
-0.2
636
Normal
-0.2
697
Tumor
-0.2
342
Normal
-0.2
491
Tumor
-0.2
447
Tumor
-0.2
641
Tumor
-0.2
353
Tumor
-0.2
355
Tumor
-0.2
473
Tumor
-0.2
413
Tumor
-0.3
665
Tumor
-0.3
497
Tumor
-0.3
435
Tumor
-0.3
615
Tumor
-0.3
573
Tumor
-0.3
553
Tumor
-0.3
127
Tumor
-0.3
271
Tumor
-0.3
545
Tumor
-0.3
977
Tumor
-0.3
445
Tumor
-0.4
431
Tumor
-0.4
221
Tumor
-0.4
715
Tumor
-0.4
395
Tumor
-0.4
923
Tumor
-0.4
477
Tumor
-0.4
817
Tumor
-0.4
815
Tumor
-0.4
911
Tumor
-0.4
785
Tumor
-0.4
727
Tumor
-0.5
123
Tumor
-0.5
685
Tumor
-0.5
463
Tumor
-0.5
285
Tumor
-0.5
313
Tumor
-0.5
367
Tumor
-0.5
231
Tumor
-0.6
363
Tumor
-0.6
354
Normal
-0.6
387
Tumor
-0.6
567
Tumor
-0.6
921
Tumor
-0.6
1041
Tumor
-0.6
983
Tumor
-0.6
425
Tumor
-0.6
483
Tumor
-0.6
112
Tumor
-0.6
741
Tumor
-0.7
967
Tumor
-0.7
671
Tumor
-0.7
965
Tumor
-0.7
1025
Tumor
-0.9
227
Tumor
-0.9
537
Tumor
-0.9
877
Tumor
-0.9
331
Tumor
-0.9
517
Tumor
-1.0
571
Tumor
-1.0
171
Tumor
-1.0
351
Tumor
-1.2
131
Tumor
-1.5
743
Tumor
-1.9
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
