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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DNAJB1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
57.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
574.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
346.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
298.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
296.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
276.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
251.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
242.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
217.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
208.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
197.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
178.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
178.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
164.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
160.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
160.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
147.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
132.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
120.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
118.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
116.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
114.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
113.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
111.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
109.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
108.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
102.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
101.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
100.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
100.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
100.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
99.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
98.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
98.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
96.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
96.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
95.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
95.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
92.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
91.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
91.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
90.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
90.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
89.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
89.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
89.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
88.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
86.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
83.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
82.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
81.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
80.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
80.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
80.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
80.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
79.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
78.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
78.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
77.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
76.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
76.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
76.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
75.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
74.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
73.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
73.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
71.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
71.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
71.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
70.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
69.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
69.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
68.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
68.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
67.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
67.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
67.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
67.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
66.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
66.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
66.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
66.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
66.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
66.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
65.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
64.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
64.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
63.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
63.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
63.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
63.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
62.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
62.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
62.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
62.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
62.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
61.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
61.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
61.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
60.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
60.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
60.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
60.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
59.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
59.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
59.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
59.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
58.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
58.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
58.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
58.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
57.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
57.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
57.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
57.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
57.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
57.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
57.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
56.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
56.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
56.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
56.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
56.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
55.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
55.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
55.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
55.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
55.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
54.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
54.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
54.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
53.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
53.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
53.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
53.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
53.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
52.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
52.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
52.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
52.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
52.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
52.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
51.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
51.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
51.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
51.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
51.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
51.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
51.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
50.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
50.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
49.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
49.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
49.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
48.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
48.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
48.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
48.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
48.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
48.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
48.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
47.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
47.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
47.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
47.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
47.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
47.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
47.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
47.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
47.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
47.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
47.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
46.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
46.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
46.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
46.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
46.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
46.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
45.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
45.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
45.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
45.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
45.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
45.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
45.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
44.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
44.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
44.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
43.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
43.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
43.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
43.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
43.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
43.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
43.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
42.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
42.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
42.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
42.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
42.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
42.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
42.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
42.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
42.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
42.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
41.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
41.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
41.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
41.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
41.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
41.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
41.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
41.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
41.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
40.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
40.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
40.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
40.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
40.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
39.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
39.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
39.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
39.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
39.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
39.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
38.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
38.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
38.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
38.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
38.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
38.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
38.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
37.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
37.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
37.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
37.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
37.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
37.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
37.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
37.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
37.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
36.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
36.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
36.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
36.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
36.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
36.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
36.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
36.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
36.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
36.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
36.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
35.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
35.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
35.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
35.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
35.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
35.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
35.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
35.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
34.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
34.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
34.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
34.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
34.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
34.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
34.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
34.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
34.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
34.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
33.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
33.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
33.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
33.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
33.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
33.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
33.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
33.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
33.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
32.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
32.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
32.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
32.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
32.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
32.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
31.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
31.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
31.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
31.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
31.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
31.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
31.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
31.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
31.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
31.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
30.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
30.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
30.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
30.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
30.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
29.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
29.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
29.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
29.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
29.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
29.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
29.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
29.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
28.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
28.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
28.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
27.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
27.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
27.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
27.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
27.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
27.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
27.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
27.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
26.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
26.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
26.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
26.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
26.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
26.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
26.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
26.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
26.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
25.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
25.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
25.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
25.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
25.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
24.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
24.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
24.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
24.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
24.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
24.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
23.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
23.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
23.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
23.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
23.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
23.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
22.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
21.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
20.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
20.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
20.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
19.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
19.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
19.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
18.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
18.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
17.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
17.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
17.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
16.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
16.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
16.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
15.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DNAJB1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
176.1
Number of samples
231
Samples
Sample
Description
TPM
DO48733
0 years, male, NA, stage:2, alive, 600 days
2777.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
1901.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
1444.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
1290.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
1248.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
1007.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
981.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
969.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
861.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
856.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
759.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
666.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
665.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
627.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
509.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
466.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
463.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
462.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
462.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
415.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
361.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
352.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
351.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
348.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
339.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
325.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
313.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
300.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
291.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
287.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
273.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
273.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
268.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
266.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
260.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
256.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
243.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
237.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
230.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
227.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
226.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
218.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
217.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
212.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
208.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
208.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
208.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
204.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
196.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
188.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
186.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
185.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
182.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
181.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
178.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
177.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
176.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
170.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
168.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
167.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
166.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
153.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
152.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
151.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
150.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
147.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
147.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
146.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
143.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
143.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
139.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
139.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
138.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
136.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
128.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
127.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
124.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
122.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
122.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
122.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
119.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
119.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
117.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
113.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
111.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
111.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
111.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
109.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
105.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
103.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
102.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
101.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
100.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
99.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
99.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
98.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
95.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
95.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
95.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
94.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
94.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
93.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
90.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
89.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
87.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
87.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
86.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
85.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
84.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
83.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
82.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
81.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
80.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
80.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
79.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
79.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
78.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
78.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
77.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
77.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
76.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
74.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
74.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
74.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
73.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
73.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
72.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
71.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
71.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
71.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
71.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
70.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
70.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
70.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
69.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
69.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
69.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
69.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
69.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
68.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
68.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
67.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
66.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
66.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
65.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
64.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
64.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
62.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
62.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
62.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
61.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
61.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
59.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
59.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
58.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
58.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
57.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
57.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
57.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
56.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
56.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
56.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
55.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
53.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
53.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
52.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
52.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
52.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
52.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
52.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
51.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
51.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
50.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
49.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
49.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
48.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
47.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
47.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
46.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
46.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
45.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
45.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
45.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
44.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
44.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
43.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
43.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
43.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
43.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
42.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
42.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
42.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
42.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
42.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
41.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
41.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
41.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
41.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
40.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
40.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
40.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
39.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
39.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
39.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
39.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
38.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
38.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
37.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
37.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
37.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
36.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
36.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
35.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
34.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
34.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
34.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
34.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
34.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
34.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
32.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
31.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
30.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
30.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
30.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
29.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
29.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
24.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
24.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
21.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
19.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
17.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
967
Tumor
1.8
865
Tumor
1.0
571
Tumor
1.0
395
Tumor
0.9
557
Tumor
0.8
567
Tumor
0.8
965
Tumor
0.8
267
Tumor
0.6
537
Tumor
0.6
285
Tumor
0.6
743
Tumor
0.6
525
Tumor
0.5
331
Tumor
0.5
913
Tumor
0.5
445
Tumor
0.5
473
Tumor
0.5
147
Tumor
0.5
513
Tumor
0.5
977
Tumor
0.4
355
Tumor
0.4
981
Tumor
0.4
1041
Tumor
0.4
724
Normal
0.4
923
Tumor
0.4
223
Tumor
0.4
493
Tumor
0.4
361
Tumor
0.4
851
Tumor
0.4
953
Tumor
0.4
727
Tumor
0.4
523
Tumor
0.4
327
Tumor
0.4
873
Tumor
0.4
915
Tumor
0.4
311
Tumor
0.3
221
Tumor
0.3
1013
Tumor
0.3
484
Normal
0.3
483
Tumor
0.3
481
Tumor
0.3
785
Tumor
0.3
755
Tumor
0.3
685
Tumor
0.3
863
Tumor
0.3
817
Tumor
0.3
516
Normal
0.3
435
Tumor
0.3
911
Tumor
0.3
641
Tumor
0.3
663
Tumor
0.2
527
Tumor
0.2
125
Tumor
0.2
877
Tumor
0.2
963
Tumor
0.2
385
Tumor
0.2
1015
Tumor
0.2
515
Tumor
0.2
786
Normal
0.2
227
Tumor
0.2
211
Tumor
0.2
391
Tumor
0.2
884
Normal
0.2
944
Normal
0.2
558
Normal
0.2
955
Tumor
0.2
697
Tumor
0.2
113
Tumor
0.2
883
Tumor
0.2
375
Tumor
0.2
698
Normal
0.2
131
Tumor
0.2
777
Tumor
0.2
491
Tumor
0.2
514
Normal
0.2
715
Tumor
0.2
665
Tumor
0.2
572
Normal
0.2
482
Normal
0.1
172
Normal
0.1
526
Normal
0.1
984
Normal
0.1
123
Tumor
0.1
171
Tumor
0.1
824
Normal
0.1
1014
Normal
0.1
943
Tumor
0.1
696
Normal
0.1
1027
Tumor
0.1
462
Normal
0.1
554
Normal
0.1
1043
Tumor
0.1
376
Normal
0.1
716
Normal
0.1
488
Normal
0.1
518
Normal
0.1
528
Normal
0.1
141
Tumor
0.1
723
Tumor
0.1
937
Tumor
0.1
816
Normal
0.1
1045
Tumor
0.1
447
Tumor
0.1
616
Normal
0.1
261
Tumor
0.1
756
Normal
0.1
313
Tumor
0.1
534
Normal
0.1
353
Tumor
0.1
978
Normal
0.1
492
Normal
0.1
721
Tumor
0.1
952
Normal
0.1
546
Normal
0.1
983
Tumor
0.1
1022
Normal
0.1
448
Normal
0.1
818
Normal
0.1
778
Normal
0.1
394
Normal
0.1
328
Normal
0.1
228
Normal
0.1
742
Normal
0.1
297
Tumor
0.1
954
Normal
0.1
568
Normal
0.1
918
Normal
0.1
866
Normal
0.1
356
Normal
0.1
413
Tumor
0.1
1028
Normal
0.1
862
Normal
0.1
966
Normal
0.1
858
Normal
0.0
461
Tumor
0.0
474
Normal
0.0
1046
Normal
0.0
212
Normal
0.0
344
Normal
0.0
912
Normal
0.0
956
Normal
0.0
497
Tumor
0.0
746
Normal
0.0
714
Normal
0.0
1016
Normal
0.0
472
Normal
0.0
976
Normal
0.0
524
Normal
0.0
145
Tumor
0.0
494
Normal
0.0
351
Tumor
0.0
427
Tumor
0.0
364
Normal
0.0
564
Normal
0.0
958
Normal
0.0
357
Tumor
0.0
722
Normal
0.0
882
Normal
0.0
218
Normal
0.0
498
Normal
0.0
286
Normal
0.0
196
Normal
0.0
217
Tumor
0.0
924
Normal
0.0
982
Normal
0.0
342
Normal
0.0
392
Normal
0.0
191
Tumor
0.0
222
Normal
0.0
463
Tumor
0.0
867
Tumor
0.0
744
Normal
0.0
917
Tumor
0.0
813
Tumor
0.0
861
Tumor
0.0
857
Tumor
0.0
298
Normal
0.0
284
Normal
0.0
436
Normal
0.0
478
Normal
0.0
922
Normal
0.0
864
Normal
0.0
393
Tumor
0.0
926
Normal
0.0
964
Normal
0.0
728
Normal
0.0
545
Tumor
0.0
431
Tumor
0.0
365
Tumor
0.0
187
Tumor
0.0
686
Normal
0.0
428
Normal
0.0
636
Normal
0.0
466
Normal
0.0
968
Normal
0.0
738
Normal
0.0
1044
Normal
0.0
517
Tumor
0.0
648
Normal
0.0
642
Normal
0.0
938
Normal
0.0
627
Tumor
0.0
878
Normal
-0.1
137
Tumor
-0.1
451
Tumor
-0.1
573
Tumor
-0.1
363
Tumor
-0.1
745
Tumor
-0.1
615
Tumor
-0.1
538
Normal
-0.1
1026
Normal
-0.1
362
Normal
-0.1
868
Normal
-0.1
352
Normal
-0.1
467
Tumor
-0.1
852
Normal
-0.1
737
Tumor
-0.1
224
Normal
-0.1
142
Normal
-0.1
416
Normal
-0.1
114
Normal
-0.1
1032
Normal
-0.1
396
Normal
-0.1
423
Tumor
-0.1
916
Normal
-0.1
232
Normal
-0.1
186
Normal
-0.1
412
Normal
-0.1
368
Normal
-0.1
618
Normal
-0.1
672
Normal
-0.1
195
Tumor
-0.1
664
Normal
-0.1
314
Normal
-0.1
384
Normal
-0.1
647
Tumor
-0.1
414
Normal
-0.1
415
Tumor
-0.1
358
Normal
-0.1
388
Normal
-0.1
278
Normal
-0.1
128
Normal
-0.1
914
Normal
-0.1
277
Tumor
-0.1
444
Normal
-0.1
666
Normal
-0.1
332
Normal
-0.1
162
Normal
-0.1
426
Normal
-0.1
283
Tumor
-0.1
258
Normal
-0.1
422
Normal
-0.1
386
Normal
-0.1
312
Normal
-0.1
468
Normal
-0.1
815
Tumor
-0.1
487
Tumor
-0.2
411
Tumor
-0.2
446
Normal
-0.2
628
Normal
-0.2
464
Normal
-0.2
111
Normal
-0.2
148
Normal
-0.2
874
Normal
-0.2
574
Normal
-0.2
695
Tumor
-0.2
138
Normal
-0.2
553
Tumor
-0.2
272
Normal
-0.2
354
Normal
-0.2
366
Normal
-0.2
671
Tumor
-0.2
465
Tumor
-0.2
188
Normal
-0.2
383
Tumor
-0.2
126
Normal
-0.2
1031
Tumor
-0.2
1042
Normal
-0.2
951
Tumor
-0.2
192
Normal
-0.2
477
Tumor
-0.2
214
Normal
-0.2
536
Normal
-0.2
132
Normal
-0.2
432
Normal
-0.2
662
Normal
-0.2
124
Normal
-0.2
533
Tumor
-0.2
262
Normal
-0.2
136
Normal
-0.2
434
Normal
-0.2
713
Tumor
-0.2
925
Tumor
-0.2
271
Tumor
-0.2
425
Tumor
-0.2
146
Normal
-0.2
814
Normal
-0.3
424
Normal
-0.3
257
Tumor
-0.3
617
Tumor
-0.3
213
Tumor
-0.3
563
Tumor
-0.3
635
Tumor
-0.3
957
Tumor
-0.3
112
Tumor
-0.3
452
Normal
-0.3
443
Tumor
-0.3
456
Normal
-0.3
471
Tumor
-0.3
343
Tumor
-0.3
268
Normal
-0.3
161
Tumor
-0.3
741
Tumor
-0.4
823
Tumor
-0.4
881
Tumor
-0.4
1025
Tumor
-0.4
661
Tumor
-0.4
185
Tumor
-0.4
455
Tumor
-0.4
367
Tumor
-0.4
433
Tumor
-0.4
975
Tumor
-0.4
231
Tumor
-0.4
135
Tumor
-0.4
341
Tumor
-0.5
1021
Tumor
-0.5
127
Tumor
-0.5
535
Tumor
-0.5
421
Tumor
-0.6
387
Tumor
-0.6
921
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
