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LGALS3
HPA
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  • TISSUE

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  • LGALS3
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: Medium
Enterocytes: Medium
Enterocytes - Microvilli: Not detected
Goblet cells: Medium
Paneth cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:803.5 nTPM
HPA:803.5 nTPM
GTEx:499.0 nTPM
FANTOM5:1669.0 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA003162Antibody CAB005191
Endocrine cells Medium-
Enterocytes Medium-
Enterocytes - Microvilli Not detected-
Glandular cells -High
Goblet cells Medium-
Paneth cells Medium-





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

803.5
overview
Male, age 65
Small intestine sample 232
nTPM: 754.4
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 1121.2
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 589
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 749.3

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

499.0
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 499.0
Samples: 207

Max nTPM: 2223.4
Min nTPM: 59.8
Std nTPM: 408.4
Median nTPM: 367.6
GTEX-111YS-1426-SM-5GID8 60-69 years, male 2223.4
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 1978.7
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 1688.3
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 1606.9
GTEX-YFCO-1326-SM-664NV 40-49 years, male 1585.4
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 1570.8
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 1510.1
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 1396.2
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 1335.2
GTEX-1122O-1326-SM-5H11F 60-69 years, female 1328.1
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 1309.2
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 1303.9
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1278.0
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 1206.2
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 1179.4
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 1173.8
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 1146.5
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 1100.6
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 1099.4
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 1064.5
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 1053.8
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 1039.9
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 1019.0
GTEX-ZTSS-0926-SM-59865 40-49 years, male 1007.6
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 1004.2
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 982.1
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 981.4
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 975.4
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 960.8
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 958.3
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 953.8
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 940.8
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 931.9
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 927.9
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 927.1
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 922.3
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 894.6
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 893.2
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 877.0
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 872.3
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 870.6
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 863.7
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 850.0
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 823.1
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 819.4
GTEX-13113-1226-SM-5EGHT 60-69 years, female 786.9
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 781.6
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 780.3
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 779.4
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 753.9
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 741.1
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 738.0
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 719.8
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 707.3
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 699.7
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 699.4
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 696.3
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 669.1
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 666.7
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 644.5
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 643.2
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 632.8
GTEX-14PKU-1626-SM-6871C 40-49 years, female 623.3
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 620.3
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 598.7
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 596.5
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 593.9
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 593.2
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 575.6
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 562.2
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 558.6
GTEX-14PN3-2026-SM-68729 60-69 years, female 552.5
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 547.0
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 537.0
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 531.5
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 522.7
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 516.4
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 514.7
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 508.4
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 484.3
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 483.0
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 468.1
GTEX-14PK6-1626-SM-6871I 70-79 years, female 467.1
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 463.5
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 463.1
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 461.5
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 460.6
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 458.5
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 456.7
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 445.7
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 445.7
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 427.5
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 426.7
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 418.5
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 412.3
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 404.0
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 393.3
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 384.0
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 382.5
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 376.7
GTEX-13O61-1326-SM-5KM31 60-69 years, male 373.5
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 372.7
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 368.6
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 367.6
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 364.8
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 358.3
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 356.0
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 342.9
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 333.3
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 333.3
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 330.9
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 323.6
GTEX-1C475-1426-SM-793CH 40-49 years, female 323.3
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 318.8
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 313.5
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 300.7
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 295.5
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 294.4
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 292.8
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 278.8
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 277.3
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 275.8
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 272.9
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 260.8
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 257.6
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 255.0
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 251.7
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 248.0
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 247.8
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 245.6
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 241.5
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 239.5
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 235.5
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 234.8
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 232.4
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 230.9
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 226.5
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 226.2
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 218.8
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 218.3
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 216.2
GTEX-1192X-2526-SM-59868 50-59 years, male 216.0
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 209.5
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 207.9
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 201.8
GTEX-13111-1426-SM-5DUW3 50-59 years, male 200.1
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 191.5
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 189.1
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 186.2
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 184.7
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 175.0
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 174.1
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 167.7
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 166.2
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 164.7
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 162.8
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 162.3
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 161.6
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 160.5
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 159.7
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 157.8
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 153.4
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 152.6
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 150.9
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 147.8
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 145.4
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 144.5
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 142.7
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 142.5
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 141.2
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 140.1
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 139.6
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 138.2
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 138.1
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 137.3
GTEX-117YX-0326-SM-5GICL 50-59 years, male 136.7
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 136.4
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 134.4
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 134.0
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 132.0
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 131.7
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 131.1
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 130.9
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 124.5
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 123.0
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 122.6
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 120.7
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 118.4
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 116.1
GTEX-183FY-1626-SM-793D8 20-29 years, male 115.0
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 113.8
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 113.7
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 109.0
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 108.0
GTEX-178AV-1226-SM-GOR11 40-49 years, male 106.7
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 106.0
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 104.7
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 104.7
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 103.6
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 103.4
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 101.9
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 101.7
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 100.5
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 96.1
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 88.4
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 83.2
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 59.8
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1669.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 1669.0
FF:10024-101D6 15,40,85 years, mixed 1669.0

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