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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LGALS3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
79.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
921.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
556.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
544.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
473.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
467.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
462.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
462.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
460.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
428.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
400.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
384.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
365.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
361.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
347.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
341.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
336.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
335.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
325.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
302.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
297.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
284.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
284.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
276.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
271.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
269.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
267.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
254.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
236.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
231.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
219.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
214.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
210.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
208.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
206.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
201.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
199.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
193.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
186.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
184.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
178.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
174.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
173.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
172.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
166.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
166.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
166.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
165.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
165.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
162.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
161.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
160.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
159.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
153.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
153.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
150.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
149.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
149.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
149.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
147.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
146.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
146.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
141.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
137.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
136.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
133.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
131.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
130.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
130.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
125.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
125.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
122.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
119.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
117.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
117.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
114.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
110.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
109.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
107.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
107.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
105.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
105.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
104.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
103.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
103.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
102.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
101.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
100.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
99.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
99.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
97.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
97.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
96.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
95.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
94.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
94.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
93.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
93.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
92.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
91.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
89.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
87.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
86.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
86.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
84.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
84.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
83.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
82.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
82.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
81.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
81.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
80.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
80.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
79.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
78.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
77.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
77.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
77.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
76.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
74.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
74.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
73.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
72.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
71.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
71.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
68.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
67.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
67.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
66.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
65.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
63.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
62.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
62.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
62.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
62.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
61.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
61.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
61.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
60.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
60.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
57.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
57.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
57.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
55.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
54.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
53.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
53.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
52.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
52.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
52.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
52.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
51.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
51.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
50.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
50.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
50.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
49.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
49.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
49.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
46.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
45.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
44.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
44.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
44.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
44.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
43.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
43.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
43.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
43.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
42.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
42.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
42.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
40.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
39.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
39.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
38.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
38.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
37.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
37.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
36.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
36.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
36.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
36.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
35.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
34.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
34.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
34.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
34.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
33.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
33.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
32.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
32.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
31.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
31.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
31.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
31.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
30.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
30.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
30.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
29.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
29.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
29.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
29.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
29.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
28.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
28.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
28.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
27.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
27.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
27.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
27.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
27.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
27.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
26.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
26.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
26.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
26.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
26.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
26.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
25.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
25.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
25.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
25.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
25.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
24.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
24.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
24.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
24.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
23.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
23.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
23.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
22.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
22.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
22.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
22.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
21.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
21.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
21.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
21.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
20.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
20.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
20.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
20.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
20.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
20.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
20.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
20.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
20.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
19.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
19.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
19.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
19.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
19.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
19.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
18.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
18.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
18.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
18.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
18.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
18.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
17.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
17.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
17.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
17.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
16.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
16.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
16.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
16.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
16.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
15.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
15.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
15.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
15.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
15.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
15.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
15.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
15.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
15.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
15.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
14.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
14.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
14.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
14.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
14.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
14.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
14.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
14.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
14.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
13.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
13.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
13.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
12.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
12.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
12.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
12.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
12.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
11.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
11.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
11.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
11.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
10.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
10.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
10.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
10.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
10.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
10.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
10.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
10.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
10.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
10.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
9.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
9.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
9.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
9.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
9.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
9.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
8.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
8.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
8.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
8.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
7.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
7.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
7.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
7.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
7.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
6.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
5.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LGALS3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
95.9
Number of samples
231
Samples
Sample
Description
TPM
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1943.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
1446.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
578.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
524.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
499.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
491.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
461.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
454.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
440.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
380.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
380.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
378.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
351.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
347.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
307.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
289.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
284.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
277.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
251.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
243.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
241.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
240.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
238.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
219.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
218.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
217.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
194.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
191.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
188.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
182.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
176.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
172.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
165.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
163.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
156.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
153.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
153.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
151.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
151.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
150.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
144.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
141.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
140.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
137.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
134.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
134.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
133.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
128.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
122.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
121.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
119.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
119.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
117.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
112.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
109.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
107.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
106.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
106.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
105.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
102.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
102.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
100.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
99.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
95.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
94.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
92.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
91.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
88.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
86.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
83.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
80.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
80.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
78.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
77.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
76.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
75.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
74.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
74.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
71.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
71.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
70.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
68.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
66.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
65.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
64.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
64.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
62.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
62.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
62.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
62.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
61.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
61.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
61.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
60.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
59.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
56.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
56.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
56.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
56.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
55.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
54.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
53.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
52.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
52.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
51.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
51.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
50.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
49.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
48.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
47.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
47.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
47.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
45.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
44.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
44.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
44.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
43.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
43.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
42.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
42.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
41.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
40.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
39.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
38.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
37.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
36.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
34.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
33.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
31.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
29.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
28.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
27.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
27.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
27.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
27.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
26.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
26.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
25.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
25.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
25.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
25.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
24.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
24.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
24.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
24.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
23.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
23.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
22.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
22.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
22.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
22.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
21.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
20.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
20.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
20.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
20.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
20.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
19.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
18.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
18.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
18.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
17.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
17.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
17.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
17.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
16.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
16.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
16.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
16.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
15.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
15.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
15.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
14.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
14.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
14.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
14.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
13.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
13.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
13.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
13.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
13.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
12.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
12.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
12.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
12.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
11.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
11.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
11.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
11.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
10.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
10.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
9.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
8.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
8.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
8.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
7.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
6.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
6.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
5.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
5.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
4.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
3.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
3.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
3.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
3.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
3.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
3.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
3.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
2.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
2.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
2.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
863
Tumor
2.5
813
Tumor
2.3
737
Tumor
2.3
135
Tumor
2.2
857
Tumor
2.0
817
Tumor
1.7
745
Tumor
1.6
957
Tumor
1.6
491
Tumor
1.6
814
Normal
1.6
313
Tumor
1.4
497
Tumor
1.4
641
Tumor
1.4
427
Tumor
1.4
283
Tumor
1.4
661
Tumor
1.3
395
Tumor
1.3
363
Tumor
1.3
921
Tumor
1.2
383
Tumor
1.2
983
Tumor
1.2
211
Tumor
1.1
823
Tumor
1.1
191
Tumor
1.1
917
Tumor
1.0
343
Tumor
1.0
421
Tumor
1.0
563
Tumor
1.0
975
Tumor
0.9
311
Tumor
0.9
535
Tumor
0.9
951
Tumor
0.8
213
Tumor
0.8
447
Tumor
0.8
943
Tumor
0.8
467
Tumor
0.8
525
Tumor
0.8
1043
Tumor
0.7
415
Tumor
0.7
385
Tumor
0.7
455
Tumor
0.7
545
Tumor
0.7
715
Tumor
0.7
953
Tumor
0.7
478
Normal
0.6
524
Normal
0.6
492
Normal
0.6
567
Tumor
0.6
444
Normal
0.6
1031
Tumor
0.6
977
Tumor
0.6
515
Tumor
0.6
697
Tumor
0.6
865
Tumor
0.6
538
Normal
0.6
445
Tumor
0.6
145
Tumor
0.5
713
Tumor
0.5
553
Tumor
0.5
223
Tumor
0.5
471
Tumor
0.5
384
Normal
0.5
192
Normal
0.4
536
Normal
0.4
721
Tumor
0.4
195
Tumor
0.4
365
Tumor
0.4
434
Normal
0.4
285
Tumor
0.4
873
Tumor
0.4
978
Normal
0.4
498
Normal
0.4
297
Tumor
0.4
727
Tumor
0.4
527
Tumor
0.3
851
Tumor
0.3
916
Normal
0.3
463
Tumor
0.3
187
Tumor
0.3
881
Tumor
0.3
268
Normal
0.3
221
Tumor
0.3
141
Tumor
0.3
461
Tumor
0.3
557
Tumor
0.3
355
Tumor
0.3
883
Tumor
0.2
852
Normal
0.2
724
Normal
0.2
224
Normal
0.2
416
Normal
0.2
188
Normal
0.2
391
Tumor
0.2
147
Tumor
0.1
913
Tumor
0.1
815
Tumor
0.1
262
Normal
0.1
423
Tumor
0.1
112
Tumor
0.1
963
Tumor
0.1
967
Tumor
0.1
267
Tumor
0.1
516
Normal
0.1
185
Tumor
0.1
161
Tumor
0.1
375
Tumor
0.1
695
Tumor
0.1
966
Normal
0.1
573
Tumor
0.0
284
Normal
0.0
386
Normal
0.0
874
Normal
0.0
443
Tumor
0.0
1028
Normal
0.0
537
Tumor
0.0
958
Normal
0.0
493
Tumor
0.0
1042
Normal
0.0
367
Tumor
0.0
312
Normal
0.0
331
Tumor
0.0
277
Tumor
-0.1
217
Tumor
-0.1
146
Normal
-0.1
413
Tumor
-0.1
868
Normal
-0.1
984
Normal
-0.1
483
Tumor
-0.1
523
Tumor
-0.1
956
Normal
-0.1
212
Normal
-0.1
1044
Normal
-0.1
425
Tumor
-0.1
925
Tumor
-0.1
662
Normal
-0.1
918
Normal
-0.1
976
Normal
-0.1
138
Normal
-0.1
558
Normal
-0.1
923
Tumor
-0.1
716
Normal
-0.1
672
Normal
-0.1
1045
Tumor
-0.2
954
Normal
-0.2
228
Normal
-0.2
671
Tumor
-0.2
366
Normal
-0.2
344
Normal
-0.2
816
Normal
-0.2
468
Normal
-0.2
271
Tumor
-0.2
332
Normal
-0.2
126
Normal
-0.2
955
Tumor
-0.2
214
Normal
-0.2
744
Normal
-0.2
272
Normal
-0.2
914
Normal
-0.3
533
Tumor
-0.3
218
Normal
-0.3
364
Normal
-0.3
362
Normal
-0.3
314
Normal
-0.3
861
Tumor
-0.3
422
Normal
-0.3
396
Normal
-0.3
1025
Tumor
-0.3
982
Normal
-0.3
136
Normal
-0.3
884
Normal
-0.3
1015
Tumor
-0.3
574
Normal
-0.3
642
Normal
-0.3
965
Tumor
-0.3
142
Normal
-0.3
663
Tumor
-0.3
258
Normal
-0.4
858
Normal
-0.4
137
Tumor
-0.4
728
Normal
-0.4
738
Normal
-0.4
617
Tumor
-0.4
924
Normal
-0.4
1041
Tumor
-0.4
494
Normal
-0.4
278
Normal
-0.4
232
Normal
-0.4
392
Normal
-0.4
368
Normal
-0.4
387
Tumor
-0.4
922
Normal
-0.4
474
Normal
-0.4
778
Normal
-0.4
686
Normal
-0.4
666
Normal
-0.4
433
Tumor
-0.4
124
Normal
-0.4
361
Tumor
-0.4
1021
Tumor
-0.4
464
Normal
-0.5
456
Normal
-0.5
968
Normal
-0.5
786
Normal
-0.5
132
Normal
-0.5
1032
Normal
-0.5
388
Normal
-0.5
227
Tumor
-0.5
818
Normal
-0.5
514
Normal
-0.5
352
Normal
-0.5
394
Normal
-0.5
664
Normal
-0.5
952
Normal
-0.5
878
Normal
-0.5
448
Normal
-0.5
432
Normal
-0.5
864
Normal
-0.5
756
Normal
-0.5
488
Normal
-0.5
867
Tumor
-0.5
428
Normal
-0.5
298
Normal
-0.5
785
Tumor
-0.5
426
Normal
-0.5
472
Normal
-0.5
125
Tumor
-0.5
665
Tumor
-0.5
424
Normal
-0.5
824
Normal
-0.5
696
Normal
-0.5
393
Tumor
-0.5
528
Normal
-0.5
742
Normal
-0.6
357
Tumor
-0.6
446
Normal
-0.6
162
Normal
-0.6
412
Normal
-0.6
354
Normal
-0.6
628
Normal
-0.6
926
Normal
-0.6
414
Normal
-0.6
546
Normal
-0.6
571
Tumor
-0.6
755
Tumor
-0.6
172
Normal
-0.6
564
Normal
-0.6
912
Normal
-0.6
286
Normal
-0.6
328
Normal
-0.6
882
Normal
-0.6
353
Tumor
-0.6
723
Tumor
-0.6
746
Normal
-0.6
148
Normal
-0.6
196
Normal
-0.6
1014
Normal
-0.6
944
Normal
-0.6
452
Normal
-0.6
572
Normal
-0.7
647
Tumor
-0.7
866
Normal
-0.7
964
Normal
-0.7
466
Normal
-0.7
451
Tumor
-0.7
114
Normal
-0.7
1022
Normal
-0.7
1026
Normal
-0.7
722
Normal
-0.7
518
Normal
-0.7
635
Tumor
-0.7
1016
Normal
-0.7
341
Tumor
-0.7
615
Tumor
-0.7
261
Tumor
-0.7
1027
Tumor
-0.8
938
Normal
-0.8
231
Tumor
-0.8
186
Normal
-0.8
526
Normal
-0.8
648
Normal
-0.8
513
Tumor
-0.8
484
Normal
-0.8
714
Normal
-0.8
911
Tumor
-0.8
462
Normal
-0.8
937
Tumor
-0.8
487
Tumor
-0.8
568
Normal
-0.8
111
Normal
-0.8
554
Normal
-0.8
862
Normal
-0.8
636
Normal
-0.8
534
Normal
-0.8
358
Normal
-0.8
376
Normal
-0.8
482
Normal
-0.8
685
Tumor
-0.8
127
Tumor
-0.8
356
Normal
-0.9
222
Normal
-0.9
618
Normal
-0.9
1046
Normal
-0.9
698
Normal
-0.9
477
Tumor
-0.9
131
Tumor
-0.9
743
Tumor
-0.9
877
Tumor
-0.9
481
Tumor
-0.9
627
Tumor
-0.9
517
Tumor
-0.9
616
Normal
-0.9
473
Tumor
-0.9
351
Tumor
-1.0
411
Tumor
-1.0
128
Normal
-1.0
257
Tumor
-1.0
431
Tumor
-1.0
915
Tumor
-1.0
327
Tumor
-1.0
342
Normal
-1.0
777
Tumor
-1.1
436
Normal
-1.1
465
Tumor
-1.1
171
Tumor
-1.1
113
Tumor
-1.2
981
Tumor
-1.2
741
Tumor
-1.4
1013
Tumor
-1.5
435
Tumor
-1.5
123
Tumor
-1.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.