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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
C19orf12 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
85.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
84.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
67.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
66.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
65.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
65.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
64.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
60.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
59.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
58.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
57.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
56.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
54.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
53.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
53.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
53.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
52.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
51.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
51.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
50.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
47.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
46.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
46.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
45.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
43.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
42.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
41.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
40.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
37.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
37.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
36.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
36.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
36.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
35.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
35.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
35.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
35.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
34.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
34.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
34.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
34.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
33.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
33.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
33.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
33.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
33.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
32.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
32.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
32.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
32.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
32.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
31.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
31.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
31.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
31.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
31.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
31.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
31.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
31.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
31.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
30.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
30.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
30.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
29.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
29.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
29.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
29.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
29.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
29.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
29.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
29.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
28.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
28.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
28.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
28.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
28.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
27.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
27.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
27.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
27.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
27.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
26.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
26.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
26.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
26.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
26.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
25.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
25.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
25.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
25.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
25.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
25.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
25.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
25.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
25.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
25.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
25.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
25.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
24.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
24.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
24.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
24.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
24.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
24.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
24.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
24.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
24.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
24.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
24.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
24.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
24.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
24.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
24.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
23.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
23.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
23.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
23.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
23.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
23.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
23.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
23.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
23.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
22.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
22.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
22.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
22.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
22.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
22.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
22.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
22.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
22.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
22.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
22.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
22.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
21.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
21.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
21.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
21.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
21.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
21.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
21.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
21.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
21.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
21.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
20.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
20.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
20.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
20.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
20.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
19.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
19.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
19.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
19.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
19.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
19.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
19.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
19.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
19.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
19.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
19.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
18.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
18.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
18.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
18.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
18.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
18.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
18.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
18.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
18.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
18.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
18.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
18.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
18.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
18.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
17.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
17.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
17.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
17.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
17.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
17.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
17.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
17.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
17.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
17.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
17.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
16.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
16.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
16.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
16.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
16.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
16.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
16.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
16.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
16.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
16.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
16.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
15.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
15.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
15.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
15.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
15.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
15.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
15.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
15.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
15.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
15.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
15.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
15.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
15.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
15.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
15.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
15.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
15.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
15.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
14.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
14.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
14.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
14.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
14.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
14.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
14.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
14.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
14.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
14.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
14.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
14.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
14.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
14.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
14.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
14.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
14.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
14.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
14.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
13.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
13.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
13.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
13.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
13.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
13.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
13.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
13.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
13.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
13.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
13.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
13.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
13.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
13.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
13.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
13.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
12.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
12.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
12.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
12.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
12.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
12.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
12.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
12.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
12.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
12.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
12.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
12.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
12.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
12.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
12.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
12.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
12.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
11.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
11.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
11.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
11.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
11.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
11.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
11.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
11.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
11.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
11.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
11.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
11.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
11.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
11.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
11.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
11.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
11.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
11.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
11.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
11.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
10.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
10.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
10.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
10.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
10.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
10.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
10.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
10.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
10.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
10.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
10.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
10.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
10.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
10.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
10.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
9.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
9.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
9.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
9.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
9.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
9.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
9.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
9.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
9.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
9.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
9.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
9.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
9.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
9.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
9.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
8.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
8.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
8.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
7.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
6.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
6.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
C19orf12 is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.0
Number of samples
231
Samples
Sample
Description
TPM
DO50807
0 years, male, NA, stage:1, alive, 540 days
76.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
35.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
29.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
28.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
26.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
26.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
25.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
23.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
22.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
21.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
21.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
20.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
20.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
20.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
18.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
18.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
18.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
18.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
18.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
18.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
17.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
17.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
17.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
16.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
16.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
16.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
16.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
16.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
16.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
16.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
15.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
15.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
15.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
15.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
15.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
15.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
15.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
15.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
15.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
14.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
14.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
14.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
14.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
14.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
14.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
14.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
14.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
14.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
14.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
14.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
14.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
13.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
13.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
13.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
13.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
13.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
13.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
13.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
13.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
13.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
13.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
12.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
12.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
12.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
12.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
12.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
12.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
12.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
12.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
12.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
12.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
12.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
12.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
12.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
12.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
12.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
12.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
11.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
11.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
11.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
11.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
11.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
11.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
11.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
10.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
10.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
10.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
10.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
10.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
10.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
10.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
10.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
10.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
10.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
10.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
9.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
9.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
9.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
9.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
9.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
9.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
9.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
9.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
9.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
8.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
8.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
8.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
8.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
8.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
8.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
8.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
8.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
8.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
8.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
8.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
7.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
7.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
7.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
7.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
7.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
7.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
7.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
7.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
7.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
7.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
7.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
7.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
7.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
7.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
7.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
6.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
6.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
6.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
6.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
6.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
6.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
6.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
6.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
6.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
6.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
6.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
6.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
6.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
6.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
6.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
5.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
5.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
5.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
5.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
5.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
5.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
5.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
4.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
4.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
4.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
4.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
4.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
4.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
4.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
4.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
4.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
4.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
3.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
3.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
3.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
466
Normal
0.9
1015
Tumor
0.8
426
Normal
0.8
915
Tumor
0.8
452
Normal
0.8
231
Tumor
0.8
1022
Normal
0.7
1032
Normal
0.7
468
Normal
0.7
944
Normal
0.7
642
Normal
0.7
286
Normal
0.7
867
Tumor
0.7
851
Tumor
0.7
862
Normal
0.6
745
Tumor
0.6
628
Normal
0.6
1046
Normal
0.6
272
Normal
0.6
567
Tumor
0.6
365
Tumor
0.6
968
Normal
0.6
615
Tumor
0.6
938
Normal
0.6
132
Normal
0.6
648
Normal
0.6
424
Normal
0.6
451
Tumor
0.6
572
Normal
0.6
422
Normal
0.5
564
Normal
0.5
1016
Normal
0.5
696
Normal
0.5
755
Tumor
0.5
918
Normal
0.5
922
Normal
0.5
878
Normal
0.5
1026
Normal
0.5
912
Normal
0.5
513
Tumor
0.5
952
Normal
0.5
662
Normal
0.5
664
Normal
0.5
262
Normal
0.5
627
Tumor
0.5
568
Normal
0.5
666
Normal
0.5
147
Tumor
0.5
465
Tumor
0.5
464
Normal
0.5
128
Normal
0.5
456
Normal
0.5
926
Normal
0.5
864
Normal
0.5
966
Normal
0.5
866
Normal
0.5
716
Normal
0.5
462
Normal
0.5
111
Normal
0.5
852
Normal
0.5
358
Normal
0.5
392
Normal
0.5
261
Tumor
0.5
1042
Normal
0.5
558
Normal
0.5
446
Normal
0.5
341
Tumor
0.4
137
Tumor
0.4
1028
Normal
0.4
978
Normal
0.4
574
Normal
0.4
636
Normal
0.4
124
Normal
0.4
528
Normal
0.4
387
Tumor
0.4
481
Tumor
0.4
364
Normal
0.4
924
Normal
0.4
414
Normal
0.4
228
Normal
0.4
484
Normal
0.4
423
Tumor
0.4
914
Normal
0.4
742
Normal
0.4
618
Normal
0.4
518
Normal
0.4
366
Normal
0.4
816
Normal
0.4
494
Normal
0.4
434
Normal
0.4
616
Normal
0.4
142
Normal
0.4
112
Tumor
0.4
882
Normal
0.4
196
Normal
0.4
955
Tumor
0.4
232
Normal
0.4
786
Normal
0.4
284
Normal
0.4
1044
Normal
0.4
785
Tumor
0.4
312
Normal
0.4
727
Tumor
0.3
298
Normal
0.3
868
Normal
0.3
1045
Tumor
0.3
824
Normal
0.3
258
Normal
0.3
698
Normal
0.3
448
Normal
0.3
526
Normal
0.3
376
Normal
0.3
516
Normal
0.3
488
Normal
0.3
388
Normal
0.3
958
Normal
0.3
858
Normal
0.3
145
Tumor
0.3
222
Normal
0.3
218
Normal
0.3
416
Normal
0.3
714
Normal
0.3
428
Normal
0.3
393
Tumor
0.3
396
Normal
0.3
342
Normal
0.3
723
Tumor
0.3
412
Normal
0.3
857
Tumor
0.3
136
Normal
0.3
686
Normal
0.3
356
Normal
0.3
874
Normal
0.3
514
Normal
0.3
445
Tumor
0.3
953
Tumor
0.3
436
Normal
0.3
534
Normal
0.3
884
Normal
0.3
113
Tumor
0.3
314
Normal
0.3
916
Normal
0.3
186
Normal
0.3
354
Normal
0.3
223
Tumor
0.3
126
Normal
0.3
212
Normal
0.3
267
Tumor
0.3
138
Normal
0.2
913
Tumor
0.2
954
Normal
0.2
278
Normal
0.2
114
Normal
0.2
546
Normal
0.2
746
Normal
0.2
982
Normal
0.2
756
Normal
0.2
362
Normal
0.2
695
Tumor
0.2
148
Normal
0.2
738
Normal
0.2
1013
Tumor
0.2
956
Normal
0.2
171
Tumor
0.2
524
Normal
0.2
474
Normal
0.2
328
Normal
0.2
523
Tumor
0.2
352
Normal
0.2
861
Tumor
0.2
685
Tumor
0.2
435
Tumor
0.2
1043
Tumor
0.2
477
Tumor
0.2
778
Normal
0.2
386
Normal
0.1
195
Tumor
0.1
498
Normal
0.1
214
Normal
0.1
332
Normal
0.1
976
Normal
0.1
172
Normal
0.1
472
Normal
0.1
1014
Normal
0.1
557
Tumor
0.1
394
Normal
0.1
728
Normal
0.1
911
Tumor
0.1
672
Normal
0.1
635
Tumor
0.1
146
Normal
0.1
344
Normal
0.1
162
Normal
0.1
224
Normal
0.1
492
Normal
0.1
217
Tumor
0.1
188
Normal
0.0
818
Normal
0.0
357
Tumor
0.0
123
Tumor
0.0
665
Tumor
0.0
213
Tumor
0.0
873
Tumor
0.0
487
Tumor
0.0
1027
Tumor
0.0
981
Tumor
0.0
722
Normal
0.0
421
Tumor
0.0
463
Tumor
0.0
963
Tumor
0.0
127
Tumor
0.0
536
Normal
0.0
187
Tumor
0.0
554
Normal
0.0
433
Tumor
0.0
538
Normal
0.0
432
Normal
0.0
455
Tumor
0.0
353
Tumor
0.0
563
Tumor
0.0
482
Normal
-0.1
517
Tumor
-0.1
285
Tumor
-0.1
525
Tumor
-0.1
964
Normal
-0.1
192
Normal
-0.1
493
Tumor
-0.1
491
Tumor
-0.1
467
Tumor
-0.1
921
Tumor
-0.1
943
Tumor
-0.2
444
Normal
-0.2
425
Tumor
-0.2
361
Tumor
-0.2
297
Tumor
-0.2
478
Normal
-0.2
161
Tumor
-0.2
415
Tumor
-0.2
391
Tumor
-0.2
461
Tumor
-0.2
984
Normal
-0.2
923
Tumor
-0.2
277
Tumor
-0.2
515
Tumor
-0.2
257
Tumor
-0.2
125
Tumor
-0.2
1025
Tumor
-0.2
268
Normal
-0.2
744
Normal
-0.2
368
Normal
-0.3
715
Tumor
-0.3
191
Tumor
-0.3
937
Tumor
-0.3
384
Normal
-0.3
447
Tumor
-0.3
483
Tumor
-0.3
975
Tumor
-0.3
647
Tumor
-0.3
814
Normal
-0.3
917
Tumor
-0.3
1021
Tumor
-0.3
413
Tumor
-0.3
141
Tumor
-0.3
967
Tumor
-0.3
185
Tumor
-0.3
741
Tumor
-0.4
537
Tumor
-0.4
427
Tumor
-0.4
211
Tumor
-0.4
977
Tumor
-0.4
865
Tumor
-0.4
131
Tumor
-0.4
617
Tumor
-0.4
545
Tumor
-0.4
863
Tumor
-0.4
1041
Tumor
-0.4
443
Tumor
-0.4
283
Tumor
-0.4
1031
Tumor
-0.5
313
Tumor
-0.5
823
Tumor
-0.5
527
Tumor
-0.5
671
Tumor
-0.5
965
Tumor
-0.5
375
Tumor
-0.5
327
Tumor
-0.5
883
Tumor
-0.5
815
Tumor
-0.5
497
Tumor
-0.5
721
Tumor
-0.6
777
Tumor
-0.6
663
Tumor
-0.6
571
Tumor
-0.6
351
Tumor
-0.6
881
Tumor
-0.6
271
Tumor
-0.6
661
Tumor
-0.6
533
Tumor
-0.6
227
Tumor
-0.6
737
Tumor
-0.7
641
Tumor
-0.7
355
Tumor
-0.7
925
Tumor
-0.7
431
Tumor
-0.7
363
Tumor
-0.7
135
Tumor
-0.7
311
Tumor
-0.7
221
Tumor
-0.7
331
Tumor
-0.8
697
Tumor
-0.8
817
Tumor
-0.8
395
Tumor
-0.8
877
Tumor
-0.8
573
Tumor
-0.8
473
Tumor
-0.8
411
Tumor
-0.8
813
Tumor
-0.8
471
Tumor
-0.8
983
Tumor
-0.8
957
Tumor
-1.0
385
Tumor
-1.0
724
Normal
-1.0
713
Tumor
-1.0
553
Tumor
-1.0
367
Tumor
-1.1
743
Tumor
-1.2
951
Tumor
-1.2
383
Tumor
-1.2
343
Tumor
-1.3
535
Tumor
-1.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
