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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SELENOS is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
56.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
373.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
215.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
206.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
180.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
174.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
172.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
153.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
141.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
140.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
139.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
132.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
130.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
128.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
125.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
119.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
118.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
113.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
109.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
108.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
107.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
104.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
102.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
100.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
100.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
98.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
97.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
97.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
96.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
96.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
95.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
94.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
94.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
93.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
92.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
91.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
91.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
90.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
89.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
88.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
88.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
87.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
86.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
86.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
83.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
83.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
82.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
81.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
80.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
80.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
80.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
79.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
79.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
78.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
78.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
77.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
77.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
77.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
76.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
76.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
75.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
74.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
74.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
74.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
74.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
73.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
71.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
71.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
71.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
70.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
70.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
70.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
70.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
70.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
69.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
69.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
69.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
68.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
68.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
68.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
68.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
68.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
67.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
67.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
67.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
67.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
67.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
66.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
66.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
65.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
65.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
65.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
65.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
65.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
64.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
64.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
64.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
64.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
64.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
63.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
62.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
62.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
62.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
62.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
62.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
62.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
62.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
62.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
61.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
61.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
61.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
60.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
60.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
60.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
60.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
60.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
60.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
59.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
59.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
59.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
59.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
59.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
59.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
59.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
58.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
58.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
57.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
57.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
57.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
57.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
57.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
56.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
56.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
56.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
56.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
56.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
56.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
56.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
55.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
55.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
55.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
55.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
55.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
55.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
54.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
54.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
53.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
53.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
53.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
53.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
53.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
53.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
53.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
52.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
52.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
52.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
52.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
51.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
51.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
51.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
51.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
51.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
51.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
51.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
51.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
51.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
51.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
51.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
50.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
50.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
50.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
50.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
50.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
49.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
49.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
49.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
49.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
49.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
49.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
48.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
48.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
48.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
48.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
48.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
48.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
48.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
48.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
48.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
48.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
48.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
48.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
48.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
47.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
47.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
47.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
47.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
47.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
47.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
47.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
47.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
46.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
46.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
46.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
46.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
46.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
46.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
46.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
46.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
46.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
46.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
46.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
46.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
45.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
45.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
45.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
45.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
45.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
45.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
45.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
45.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
45.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
45.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
45.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
45.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
44.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
44.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
43.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
43.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
43.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
43.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
43.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
43.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
43.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
43.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
43.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
43.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
42.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
42.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
42.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
42.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
42.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
42.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
42.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
42.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
42.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
42.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
41.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
41.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
41.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
41.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
41.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
41.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
41.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
41.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
40.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
40.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
40.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
40.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
40.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
40.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
40.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
40.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
40.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
40.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
40.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
40.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
40.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
39.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
39.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
39.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
39.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
39.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
39.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
38.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
38.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
38.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
38.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
38.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
38.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
38.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
37.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
37.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
37.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
37.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
37.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
37.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
37.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
37.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
37.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
37.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
36.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
36.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
36.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
36.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
36.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
36.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
35.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
35.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
35.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
35.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
35.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
35.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
35.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
34.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
34.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
34.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
33.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
33.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
33.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
32.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
32.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
31.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
31.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
31.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
31.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
31.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
30.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
30.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
30.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
30.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
30.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
29.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
29.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
29.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
29.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
29.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
29.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
29.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
28.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
28.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
28.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
28.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
28.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
28.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
28.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
27.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
27.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
26.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
26.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
26.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
25.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
25.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
24.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
24.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
24.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
24.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
24.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
24.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
23.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
23.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
22.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
22.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
21.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
21.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
20.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
19.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
18.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
18.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
18.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
17.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
16.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
15.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
445
Tumor
1.6
471
Tumor
1.4
857
Tumor
1.4
535
Tumor
1.1
921
Tumor
1.1
615
Tumor
1.1
135
Tumor
1.0
817
Tumor
1.0
1045
Tumor
0.9
341
Tumor
0.9
925
Tumor
0.9
1025
Tumor
0.8
641
Tumor
0.8
635
Tumor
0.8
975
Tumor
0.7
917
Tumor
0.7
455
Tumor
0.7
863
Tumor
0.7
724
Normal
0.7
211
Tumor
0.7
285
Tumor
0.7
661
Tumor
0.6
963
Tumor
0.6
271
Tumor
0.6
385
Tumor
0.6
427
Tumor
0.6
785
Tumor
0.5
536
Normal
0.5
951
Tumor
0.5
127
Tumor
0.5
1041
Tumor
0.5
383
Tumor
0.5
1015
Tumor
0.5
367
Tumor
0.5
627
Tumor
0.5
231
Tumor
0.5
1031
Tumor
0.5
573
Tumor
0.5
343
Tumor
0.5
443
Tumor
0.5
357
Tumor
0.5
553
Tumor
0.4
665
Tumor
0.4
866
Normal
0.4
447
Tumor
0.4
965
Tumor
0.4
937
Tumor
0.4
924
Normal
0.4
913
Tumor
0.4
916
Normal
0.4
697
Tumor
0.4
923
Tumor
0.4
387
Tumor
0.4
874
Normal
0.4
983
Tumor
0.4
331
Tumor
0.4
881
Tumor
0.4
473
Tumor
0.4
277
Tumor
0.4
422
Normal
0.3
361
Tumor
0.3
918
Normal
0.3
267
Tumor
0.3
311
Tumor
0.3
533
Tumor
0.3
221
Tumor
0.3
365
Tumor
0.3
722
Normal
0.3
487
Tumor
0.3
671
Tumor
0.3
395
Tumor
0.3
481
Tumor
0.3
966
Normal
0.3
171
Tumor
0.2
428
Normal
0.2
411
Tumor
0.2
421
Tumor
0.2
545
Tumor
0.2
413
Tumor
0.2
433
Tumor
0.2
922
Normal
0.2
647
Tumor
0.2
738
Normal
0.2
351
Tumor
0.2
327
Tumor
0.2
328
Normal
0.2
1042
Normal
0.2
423
Tumor
0.1
1028
Normal
0.1
483
Tumor
0.1
744
Normal
0.1
1044
Normal
0.1
968
Normal
0.1
815
Tumor
0.1
976
Normal
0.1
185
Tumor
0.1
567
Tumor
0.1
967
Tumor
0.1
746
Normal
0.1
964
Normal
0.1
911
Tumor
0.1
685
Tumor
0.1
616
Normal
0.1
492
Normal
0.1
1021
Tumor
0.1
695
Tumor
0.1
297
Tumor
0.1
956
Normal
0.1
484
Normal
0.1
1022
Normal
0.1
482
Normal
0.1
128
Normal
0.1
477
Tumor
0.1
958
Normal
0.1
742
Normal
0.1
546
Normal
0.1
955
Tumor
0.1
696
Normal
0.1
498
Normal
0.1
1014
Normal
0.1
515
Tumor
0.1
982
Normal
0.0
538
Normal
0.0
883
Tumor
0.0
723
Tumor
0.0
978
Normal
0.0
852
Normal
0.0
1032
Normal
0.0
721
Tumor
0.0
914
Normal
0.0
716
Normal
0.0
436
Normal
0.0
926
Normal
0.0
938
Normal
0.0
862
Normal
0.0
527
Tumor
0.0
461
Tumor
0.0
662
Normal
0.0
537
Tumor
0.0
415
Tumor
0.0
944
Normal
0.0
715
Tumor
0.0
516
Normal
0.0
554
Normal
0.0
628
Normal
0.0
534
Normal
0.0
223
Tumor
0.0
981
Tumor
0.0
1043
Tumor
0.0
954
Normal
0.0
354
Normal
0.0
212
Normal
0.0
188
Normal
0.0
574
Normal
0.0
977
Tumor
-0.1
823
Tumor
-0.1
714
Normal
-0.1
943
Tumor
-0.1
286
Normal
-0.1
686
Normal
-0.1
713
Tumor
-0.1
356
Normal
-0.1
111
Normal
-0.1
558
Normal
-0.1
131
Tumor
-0.1
284
Normal
-0.1
424
Normal
-0.1
524
Normal
-0.1
412
Normal
-0.1
1016
Normal
-0.1
362
Normal
-0.1
494
Normal
-0.1
518
Normal
-0.1
126
Normal
-0.1
493
Tumor
-0.1
213
Tumor
-0.1
877
Tumor
-0.1
698
Normal
-0.1
217
Tumor
-0.1
478
Normal
-0.1
514
Normal
-0.1
666
Normal
-0.1
1046
Normal
-0.1
388
Normal
-0.1
446
Normal
-0.1
636
Normal
-0.1
737
Tumor
-0.1
396
Normal
-0.1
728
Normal
-0.1
434
Normal
-0.1
526
Normal
-0.1
222
Normal
-0.1
882
Normal
-0.1
192
Normal
-0.1
384
Normal
-0.1
474
Normal
-0.1
816
Normal
-0.1
414
Normal
-0.1
456
Normal
-0.1
745
Tumor
-0.1
1026
Normal
-0.1
462
Normal
-0.2
488
Normal
-0.2
344
Normal
-0.2
868
Normal
-0.2
136
Normal
-0.2
672
Normal
-0.2
138
Normal
-0.2
467
Tumor
-0.2
568
Normal
-0.2
114
Normal
-0.2
268
Normal
-0.2
786
Normal
-0.2
416
Normal
-0.2
756
Normal
-0.2
813
Tumor
-0.2
444
Normal
-0.2
278
Normal
-0.2
497
Tumor
-0.2
777
Tumor
-0.2
366
Normal
-0.2
525
Tumor
-0.2
214
Normal
-0.2
873
Tumor
-0.2
228
Normal
-0.2
778
Normal
-0.2
984
Normal
-0.2
364
Normal
-0.2
145
Tumor
-0.2
298
Normal
-0.2
814
Normal
-0.2
864
Normal
-0.2
472
Normal
-0.2
262
Normal
-0.2
224
Normal
-0.2
648
Normal
-0.2
426
Normal
-0.2
448
Normal
-0.2
132
Normal
-0.2
312
Normal
-0.2
617
Tumor
-0.2
141
Tumor
-0.2
196
Normal
-0.2
368
Normal
-0.2
386
Normal
-0.2
187
Tumor
-0.3
513
Tumor
-0.3
113
Tumor
-0.3
878
Normal
-0.3
867
Tumor
-0.3
528
Normal
-0.3
435
Tumor
-0.3
375
Tumor
-0.3
912
Normal
-0.3
142
Normal
-0.3
124
Normal
-0.3
227
Tumor
-0.3
391
Tumor
-0.3
517
Tumor
-0.3
572
Normal
-0.3
466
Normal
-0.3
727
Tumor
-0.3
218
Normal
-0.3
491
Tumor
-0.3
191
Tumor
-0.3
957
Tumor
-0.3
112
Tumor
-0.3
376
Normal
-0.3
392
Normal
-0.3
465
Tumor
-0.3
664
Normal
-0.3
563
Tumor
-0.3
463
Tumor
-0.3
425
Tumor
-0.3
952
Normal
-0.3
161
Tumor
-0.3
358
Normal
-0.3
393
Tumor
-0.3
123
Tumor
-0.3
283
Tumor
-0.4
741
Tumor
-0.4
571
Tumor
-0.4
195
Tumor
-0.4
394
Normal
-0.4
342
Normal
-0.4
352
Normal
-0.4
884
Normal
-0.4
464
Normal
-0.4
137
Tumor
-0.4
915
Tumor
-0.4
743
Tumor
-0.4
452
Normal
-0.4
451
Tumor
-0.4
146
Normal
-0.4
564
Normal
-0.4
824
Normal
-0.4
314
Normal
-0.4
1027
Tumor
-0.4
431
Tumor
-0.4
332
Normal
-0.4
755
Tumor
-0.4
148
Normal
-0.4
858
Normal
-0.4
432
Normal
-0.4
172
Normal
-0.4
642
Normal
-0.5
272
Normal
-0.5
468
Normal
-0.5
186
Normal
-0.5
261
Tumor
-0.5
162
Normal
-0.5
232
Normal
-0.5
258
Normal
-0.5
557
Tumor
-0.5
313
Tumor
-0.5
355
Tumor
-0.5
618
Normal
-0.5
861
Tumor
-0.5
523
Tumor
-0.5
147
Tumor
-0.5
363
Tumor
-0.6
818
Normal
-0.6
663
Tumor
-0.6
953
Tumor
-0.6
353
Tumor
-0.7
851
Tumor
-0.7
1013
Tumor
-0.7
257
Tumor
-0.7
865
Tumor
-0.8
125
Tumor
-0.9
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.