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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PDHA1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
74.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
354.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
275.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
208.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
194.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
186.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
183.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
181.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
176.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
159.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
159.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
151.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
151.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
148.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
141.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
141.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
140.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
140.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
139.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
139.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
138.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
138.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
137.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
134.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
134.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
133.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
132.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
125.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
124.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
123.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
122.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
121.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
118.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
117.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
117.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
115.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
115.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
113.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
113.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
112.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
112.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
110.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
108.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
107.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
107.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
106.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
104.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
104.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
104.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
103.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
103.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
102.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
102.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
101.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
100.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
97.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
97.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
96.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
96.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
96.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
95.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
95.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
94.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
94.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
94.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
94.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
94.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
94.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
93.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
93.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
92.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
92.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
91.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
91.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
91.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
91.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
91.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
91.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
91.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
90.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
90.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
90.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
88.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
88.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
87.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
87.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
86.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
86.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
86.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
85.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
85.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
85.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
85.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
85.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
84.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
84.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
83.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
83.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
83.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
82.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
82.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
82.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
82.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
81.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
81.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
81.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
81.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
81.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
80.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
80.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
80.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
80.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
80.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
80.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
80.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
80.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
80.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
80.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
79.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
79.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
79.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
78.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
78.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
77.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
76.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
76.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
75.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
75.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
75.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
75.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
75.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
75.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
75.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
75.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
75.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
74.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
74.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
74.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
73.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
73.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
73.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
72.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
72.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
72.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
71.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
71.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
71.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
71.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
71.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
71.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
71.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
70.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
70.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
70.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
70.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
70.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
70.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
70.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
70.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
69.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
69.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
69.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
69.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
69.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
69.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
69.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
69.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
68.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
68.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
68.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
68.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
68.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
68.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
68.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
68.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
67.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
67.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
67.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
67.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
67.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
66.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
66.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
66.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
66.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
66.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
66.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
66.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
66.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
66.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
65.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
65.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
65.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
65.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
65.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
65.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
65.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
64.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
64.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
64.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
64.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
63.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
63.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
63.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
63.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
62.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
62.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
62.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
62.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
62.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
62.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
62.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
61.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
61.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
61.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
61.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
61.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
61.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
61.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
61.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
61.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
61.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
61.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
61.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
60.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
60.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
60.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
60.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
60.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
60.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
60.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
59.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
59.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
59.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
59.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
59.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
59.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
58.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
58.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
58.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
58.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
58.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
58.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
58.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
57.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
57.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
57.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
57.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
57.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
57.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
56.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
56.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
56.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
56.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
56.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
56.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
55.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
55.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
55.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
55.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
55.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
55.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
55.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
54.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
54.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
54.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
54.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
54.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
54.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
53.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
53.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
53.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
53.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
53.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
53.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
52.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
52.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
52.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
52.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
52.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
52.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
52.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
51.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
51.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
51.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
51.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
51.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
51.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
51.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
51.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
51.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
50.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
50.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
49.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
49.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
49.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
49.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
49.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
49.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
49.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
48.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
48.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
47.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
47.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
46.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
46.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
46.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
46.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
46.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
46.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
46.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
45.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
45.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
45.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
44.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
44.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
44.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
44.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
44.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
44.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
44.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
44.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
43.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
43.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
43.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
43.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
43.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
42.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
42.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
42.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
42.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
42.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
42.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
41.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
41.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
40.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
40.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
39.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
39.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
39.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
37.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
37.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
36.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
36.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
36.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
36.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
36.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
36.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
35.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
35.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
34.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
34.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
33.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
33.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
32.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
31.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
30.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
30.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
30.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
29.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
29.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
29.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
28.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PDHA1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
26.6
Number of samples
231
Samples
Sample
Description
TPM
DO50829
0 years, male, NA, stage:3, alive, 570 days
93.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
88.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
62.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
57.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
54.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
53.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
50.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
50.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
47.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
47.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
47.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
46.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
45.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
44.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
43.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
43.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
43.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
41.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
41.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
40.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
39.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
39.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
39.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
39.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
38.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
38.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
37.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
36.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
36.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
36.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
36.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
36.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
36.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
35.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
35.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
35.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
35.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
35.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
34.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
34.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
34.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
33.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
33.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
33.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
33.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
33.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
33.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
33.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
33.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
33.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
33.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
33.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
32.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
32.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
32.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
32.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
32.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
32.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
31.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
31.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
31.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
31.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
31.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
31.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
31.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
30.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
30.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
30.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
29.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
29.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
29.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
29.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
29.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
29.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
28.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
28.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
28.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
28.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
28.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
27.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
27.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
27.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
27.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
27.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
26.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
26.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
26.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
26.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
26.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
26.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
26.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
26.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
26.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
26.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
26.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
25.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
25.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
25.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
25.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
25.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
25.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
25.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
24.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
24.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
24.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
24.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
24.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
24.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
24.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
24.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
24.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
24.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
24.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
23.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
23.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
23.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
23.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
23.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
23.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
23.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
23.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
23.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
22.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
22.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
22.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
22.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
22.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
22.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
22.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
22.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
22.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
22.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
22.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
22.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
22.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
22.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
22.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
22.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
22.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
21.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
21.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
21.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
21.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
21.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
21.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
21.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
21.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
21.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
21.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
21.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
21.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
21.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
20.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
20.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
20.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
20.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
20.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
20.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
20.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
20.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
20.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
20.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
20.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
20.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
20.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
20.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
20.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
20.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
20.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
20.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
20.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
20.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
20.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
19.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
19.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
19.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
19.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
19.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
19.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
19.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
19.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
19.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
19.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
19.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
19.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
19.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
19.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
18.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
18.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
18.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
18.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
18.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
18.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
17.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
17.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
17.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
17.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
17.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
17.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
17.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
17.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
17.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
17.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
17.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
16.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
16.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
16.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
16.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
16.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
15.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
15.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
15.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
15.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
15.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
15.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
15.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
15.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
15.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
14.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
14.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
14.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
14.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
13.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
13.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
13.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
13.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
12.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
12.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
11.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
11.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
10.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
925
Tumor
1.5
627
Tumor
1.4
1041
Tumor
1.1
227
Tumor
1.0
487
Tumor
1.0
563
Tumor
0.9
745
Tumor
0.9
231
Tumor
0.9
537
Tumor
0.8
411
Tumor
0.8
515
Tumor
0.8
823
Tumor
0.7
491
Tumor
0.7
483
Tumor
0.7
1043
Tumor
0.7
465
Tumor
0.7
361
Tumor
0.6
127
Tumor
0.6
513
Tumor
0.6
473
Tumor
0.6
755
Tumor
0.6
635
Tumor
0.6
571
Tumor
0.6
915
Tumor
0.5
427
Tumor
0.5
851
Tumor
0.5
1027
Tumor
0.5
171
Tumor
0.5
477
Tumor
0.5
313
Tumor
0.5
1013
Tumor
0.5
951
Tumor
0.5
1025
Tumor
0.4
185
Tumor
0.4
461
Tumor
0.4
921
Tumor
0.4
865
Tumor
0.4
145
Tumor
0.4
957
Tumor
0.4
161
Tumor
0.4
451
Tumor
0.4
387
Tumor
0.4
452
Normal
0.3
172
Normal
0.3
863
Tumor
0.3
533
Tumor
0.3
221
Tumor
0.3
525
Tumor
0.3
523
Tumor
0.3
641
Tumor
0.3
135
Tumor
0.3
421
Tumor
0.3
557
Tumor
0.3
564
Normal
0.3
391
Tumor
0.3
494
Normal
0.3
471
Tumor
0.3
746
Normal
0.3
665
Tumor
0.2
883
Tumor
0.2
228
Normal
0.2
257
Tumor
0.2
923
Tumor
0.2
365
Tumor
0.2
981
Tumor
0.2
864
Normal
0.2
553
Tumor
0.2
868
Normal
0.2
615
Tumor
0.2
1015
Tumor
0.2
958
Normal
0.2
363
Tumor
0.2
824
Normal
0.2
852
Normal
0.2
132
Normal
0.2
423
Tumor
0.2
222
Normal
0.2
741
Tumor
0.2
425
Tumor
0.2
443
Tumor
0.2
436
Normal
0.2
715
Tumor
0.2
431
Tumor
0.2
882
Normal
0.2
546
Normal
0.2
648
Normal
0.2
187
Tumor
0.1
466
Normal
0.1
278
Normal
0.1
112
Tumor
0.1
341
Tumor
0.1
742
Normal
0.1
435
Tumor
0.1
123
Tumor
0.1
214
Normal
0.1
728
Normal
0.1
162
Normal
0.1
534
Normal
0.1
414
Normal
0.1
137
Tumor
0.1
867
Tumor
0.1
448
Normal
0.1
978
Normal
0.1
416
Normal
0.1
777
Tumor
0.1
462
Normal
0.1
472
Normal
0.1
141
Tumor
0.1
394
Normal
0.1
113
Tumor
0.1
816
Normal
0.1
284
Normal
0.1
516
Normal
0.1
567
Tumor
0.1
136
Normal
0.1
138
Normal
0.1
432
Normal
0.1
573
Tumor
0.1
642
Normal
0.1
916
Normal
0.1
232
Normal
0.1
756
Normal
0.0
714
Normal
0.0
976
Normal
0.0
128
Normal
0.0
148
Normal
0.0
911
Tumor
0.0
213
Tumor
0.0
484
Normal
0.0
538
Normal
0.0
468
Normal
0.0
362
Normal
0.0
955
Tumor
0.0
285
Tumor
0.0
862
Normal
0.0
1031
Tumor
0.0
262
Normal
0.0
188
Normal
0.0
738
Normal
0.0
125
Tumor
0.0
366
Normal
0.0
356
Normal
0.0
327
Tumor
0.0
965
Tumor
0.0
367
Tumor
0.0
878
Normal
0.0
312
Normal
0.0
358
Normal
0.0
944
Normal
0.0
861
Tumor
0.0
114
Normal
0.0
328
Normal
0.0
695
Tumor
0.0
574
Normal
0.0
926
Normal
0.0
786
Normal
0.0
492
Normal
0.0
412
Normal
0.0
884
Normal
0.0
393
Tumor
0.0
386
Normal
0.0
647
Tumor
0.0
858
Normal
0.0
526
Normal
0.0
196
Normal
0.0
191
Tumor
0.0
937
Tumor
0.0
1028
Normal
0.0
357
Tumor
0.0
628
Normal
0.0
528
Normal
0.0
482
Normal
0.0
186
Normal
0.0
1045
Tumor
0.0
636
Normal
0.0
721
Tumor
0.0
956
Normal
-0.1
277
Tumor
-0.1
314
Normal
-0.1
147
Tumor
-0.1
922
Normal
-0.1
1042
Normal
-0.1
913
Tumor
-0.1
716
Normal
-0.1
982
Normal
-0.1
954
Normal
-0.1
514
Normal
-0.1
697
Tumor
-0.1
924
Normal
-0.1
212
Normal
-0.1
964
Normal
-0.1
267
Tumor
-0.1
217
Tumor
-0.1
422
Normal
-0.1
952
Normal
-0.1
662
Normal
-0.1
666
Normal
-0.1
524
Normal
-0.1
434
Normal
-0.1
428
Normal
-0.1
426
Normal
-0.1
698
Normal
-0.1
355
Tumor
-0.1
488
Normal
-0.1
727
Tumor
-0.1
413
Tumor
-0.1
874
Normal
-0.1
1014
Normal
-0.1
554
Normal
-0.1
866
Normal
-0.1
953
Tumor
-0.1
1032
Normal
-0.1
463
Tumor
-0.1
388
Normal
-0.1
268
Normal
-0.1
474
Normal
-0.1
722
Normal
-0.1
383
Tumor
-0.1
713
Tumor
-0.1
918
Normal
-0.1
572
Normal
-0.1
1026
Normal
-0.1
344
Normal
-0.1
478
Normal
-0.1
195
Tumor
-0.1
297
Tumor
-0.1
131
Tumor
-0.2
298
Normal
-0.2
455
Tumor
-0.2
967
Tumor
-0.2
385
Tumor
-0.2
1021
Tumor
-0.2
126
Normal
-0.2
142
Normal
-0.2
415
Tumor
-0.2
778
Normal
-0.2
424
Normal
-0.2
685
Tumor
-0.2
111
Normal
-0.2
518
Normal
-0.2
975
Tumor
-0.2
392
Normal
-0.2
223
Tumor
-0.2
464
Normal
-0.2
857
Tumor
-0.2
498
Normal
-0.2
785
Tumor
-0.2
456
Normal
-0.2
395
Tumor
-0.2
368
Normal
-0.2
881
Tumor
-0.2
977
Tumor
-0.2
272
Normal
-0.2
616
Normal
-0.2
568
Normal
-0.2
815
Tumor
-0.2
1044
Normal
-0.2
737
Tumor
-0.2
446
Normal
-0.2
517
Tumor
-0.2
663
Tumor
-0.2
286
Normal
-0.2
444
Normal
-0.3
1046
Normal
-0.3
224
Normal
-0.3
873
Tumor
-0.3
696
Normal
-0.3
258
Normal
-0.3
558
Normal
-0.3
912
Normal
-0.3
218
Normal
-0.3
146
Normal
-0.3
724
Normal
-0.3
813
Tumor
-0.3
661
Tumor
-0.3
818
Normal
-0.3
364
Normal
-0.3
963
Tumor
-0.3
332
Normal
-0.3
375
Tumor
-0.3
192
Normal
-0.3
1022
Normal
-0.3
354
Normal
-0.3
664
Normal
-0.3
618
Normal
-0.3
968
Normal
-0.3
723
Tumor
-0.3
271
Tumor
-0.3
497
Tumor
-0.3
914
Normal
-0.3
433
Tumor
-0.3
966
Normal
-0.4
943
Tumor
-0.4
817
Tumor
-0.4
447
Tumor
-0.4
938
Normal
-0.4
686
Normal
-0.4
617
Tumor
-0.4
672
Normal
-0.4
261
Tumor
-0.4
396
Normal
-0.4
124
Normal
-0.4
376
Normal
-0.4
384
Normal
-0.4
351
Tumor
-0.4
467
Tumor
-0.4
352
Normal
-0.4
1016
Normal
-0.4
814
Normal
-0.4
481
Tumor
-0.4
535
Tumor
-0.4
353
Tumor
-0.4
331
Tumor
-0.4
343
Tumor
-0.4
311
Tumor
-0.5
527
Tumor
-0.5
283
Tumor
-0.5
917
Tumor
-0.5
744
Normal
-0.5
342
Normal
-0.5
493
Tumor
-0.5
536
Normal
-0.5
984
Normal
-0.6
877
Tumor
-0.6
211
Tumor
-0.6
445
Tumor
-0.6
545
Tumor
-0.6
983
Tumor
-0.7
743
Tumor
-0.7
671
Tumor
-1.7
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
