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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PEX11B is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
25.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
85.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
77.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
62.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
57.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
57.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
57.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
55.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
55.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
54.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
53.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
53.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
52.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
51.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
51.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
51.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
51.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
51.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
50.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
49.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
48.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
48.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
47.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
47.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
45.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
45.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
44.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
44.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
43.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
43.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
43.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
42.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
42.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
41.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
41.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
41.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
41.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
41.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
40.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
40.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
40.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
40.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
40.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
40.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
38.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
38.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
38.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
37.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
37.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
37.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
37.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
36.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
36.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
36.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
36.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
36.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
36.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
36.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
35.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
35.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
35.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
35.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
34.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
34.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
34.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
33.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
33.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
33.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
33.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
33.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
33.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
33.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
33.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
33.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
33.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
32.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
32.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
32.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
32.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
31.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
31.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
31.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
31.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
31.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
31.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
31.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
31.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
31.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
31.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
30.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
30.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
30.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
30.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
30.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
30.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
30.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
30.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
29.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
29.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
29.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
29.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
29.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
29.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
29.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
29.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
29.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
29.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
29.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
28.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
28.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
28.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
28.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
28.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
28.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
28.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
28.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
28.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
28.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
28.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
28.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
27.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
27.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
27.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
27.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
27.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
27.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
27.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
27.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
27.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
27.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
27.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
27.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
27.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
26.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
26.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
26.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
26.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
26.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
26.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
26.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
26.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
26.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
26.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
26.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
26.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
25.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
25.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
25.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
25.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
25.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
25.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
25.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
25.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
25.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
25.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
25.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
25.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
25.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
25.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
25.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
24.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
24.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
24.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
24.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
24.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
24.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
24.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
24.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
24.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
24.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
24.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
24.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
24.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
23.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
23.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
23.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
23.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
23.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
23.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
23.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
23.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
23.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
23.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
23.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
23.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
23.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
23.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
23.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
23.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
23.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
23.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
23.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
23.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
22.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
22.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
22.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
22.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
22.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
22.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
22.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
22.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
22.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
22.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
22.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
22.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
22.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
22.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
22.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
21.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
21.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
21.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
21.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
21.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
21.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
21.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
21.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
21.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
21.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
21.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
21.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
21.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
21.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
21.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
21.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
21.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
20.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
20.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
20.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
20.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
20.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
20.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
20.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
20.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
20.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
20.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
20.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
20.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
20.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
20.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
20.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
20.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
19.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
19.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
19.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
19.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
19.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
19.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
19.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
19.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
19.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
19.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
19.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
19.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
19.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
18.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
18.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
18.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
18.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
18.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
18.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
18.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
18.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
18.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
18.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
18.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
18.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
18.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
18.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
18.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
18.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
18.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
18.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
17.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
17.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
17.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
17.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
17.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
17.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
17.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
17.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
17.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
17.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
17.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
17.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
17.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
17.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
16.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
16.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
16.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
16.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
16.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
16.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
16.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
16.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
16.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
16.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
16.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
16.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
16.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
16.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
16.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
15.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
15.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
15.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
15.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
15.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
15.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
15.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
15.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
15.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
15.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
15.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
15.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
15.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
14.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
14.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
14.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
14.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
14.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
14.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
14.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
14.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
14.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
14.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
14.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
14.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
14.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
14.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
14.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
14.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
14.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
13.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
13.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
13.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
13.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
13.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
13.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
13.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
13.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
13.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
12.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
12.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
12.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
12.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
12.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
11.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
11.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
11.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
11.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
11.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
10.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
10.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
10.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
10.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
9.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
9.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PEX11B is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.3
Number of samples
231
Samples
Sample
Description
TPM
DO50783
0 years, male, NA, stage:3, alive, 480 days
55.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
55.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
47.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
46.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
46.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
45.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
45.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
44.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
42.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
40.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
39.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
39.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
39.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
39.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
39.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
38.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
37.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
37.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
36.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
36.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
35.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
35.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
35.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
35.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
35.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
35.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
34.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
34.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
33.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
33.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
33.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
32.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
32.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
32.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
32.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
32.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
32.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
31.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
31.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
31.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
31.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
31.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
31.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
30.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
30.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
29.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
29.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
29.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
29.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
29.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
29.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
28.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
28.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
28.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
28.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
28.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
27.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
27.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
27.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
27.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
27.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
27.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
26.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
26.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
26.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
26.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
26.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
26.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
26.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
26.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
25.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
25.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
25.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
25.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
25.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
25.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
25.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
25.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
24.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
24.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
24.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
24.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
24.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
24.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
23.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
23.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
23.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
23.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
23.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
23.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
23.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
23.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
23.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
22.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
22.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
22.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
22.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
22.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
22.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
22.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
22.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
22.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
22.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
22.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
22.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
21.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
21.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
21.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
21.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
21.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
21.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
21.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
21.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
21.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
21.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
21.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
20.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
20.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
20.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
20.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
20.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
20.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
20.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
20.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
20.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
19.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
19.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
19.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
19.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
19.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
19.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
19.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
19.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
18.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
18.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
18.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
18.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
18.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
18.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
18.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
18.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
18.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
18.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
18.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
18.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
18.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
17.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
17.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
17.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
17.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
17.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
17.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
17.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
17.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
17.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
17.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
17.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
17.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
17.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
17.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
17.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
16.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
16.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
16.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
16.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
16.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
16.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
16.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
16.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
16.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
15.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
15.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
15.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
15.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
15.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
15.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
15.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
15.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
15.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
15.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
14.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
14.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
14.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
14.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
14.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
14.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
14.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
14.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
14.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
13.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
13.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
13.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
13.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
13.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
13.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
13.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
12.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
12.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
12.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
12.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
12.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
11.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
11.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
11.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
11.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
11.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
11.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
11.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
11.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
10.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
10.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
10.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
10.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
10.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
8.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
7.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
911
Tumor
1.6
533
Tumor
1.5
1027
Tumor
1.2
171
Tumor
1.2
427
Tumor
1.2
557
Tumor
1.1
471
Tumor
1.1
1041
Tumor
1.1
727
Tumor
1.0
1021
Tumor
1.0
685
Tumor
1.0
123
Tumor
1.0
857
Tumor
0.9
1031
Tumor
0.9
741
Tumor
0.9
977
Tumor
0.9
271
Tumor
0.8
915
Tumor
0.8
867
Tumor
0.8
435
Tumor
0.8
231
Tumor
0.7
147
Tumor
0.7
975
Tumor
0.7
527
Tumor
0.7
257
Tumor
0.7
411
Tumor
0.7
567
Tumor
0.7
823
Tumor
0.6
925
Tumor
0.6
477
Tumor
0.5
135
Tumor
0.5
1025
Tumor
0.5
445
Tumor
0.5
861
Tumor
0.5
745
Tumor
0.5
647
Tumor
0.5
553
Tumor
0.4
615
Tumor
0.4
515
Tumor
0.4
481
Tumor
0.4
953
Tumor
0.4
785
Tumor
0.4
363
Tumor
0.4
383
Tumor
0.4
483
Tumor
0.4
523
Tumor
0.4
213
Tumor
0.4
365
Tumor
0.4
921
Tumor
0.4
261
Tumor
0.4
881
Tumor
0.4
393
Tumor
0.3
525
Tumor
0.3
865
Tumor
0.3
433
Tumor
0.3
487
Tumor
0.3
137
Tumor
0.3
277
Tumor
0.3
957
Tumor
0.3
641
Tumor
0.3
357
Tumor
0.2
873
Tumor
0.2
817
Tumor
0.2
737
Tumor
0.2
267
Tumor
0.2
981
Tumor
0.2
571
Tumor
0.2
697
Tumor
0.2
813
Tumor
0.2
473
Tumor
0.2
313
Tumor
0.2
695
Tumor
0.2
415
Tumor
0.2
883
Tumor
0.1
954
Normal
0.1
913
Tumor
0.1
491
Tumor
0.1
517
Tumor
0.1
191
Tumor
0.1
221
Tumor
0.1
112
Tumor
0.1
431
Tumor
0.1
863
Tumor
0.1
443
Tumor
0.1
635
Tumor
0.1
963
Tumor
0.1
227
Tumor
0.1
824
Normal
0.1
777
Tumor
0.1
412
Normal
0.0
715
Tumor
0.0
478
Normal
0.0
573
Tumor
0.0
1043
Tumor
0.0
416
Normal
0.0
493
Tumor
0.0
364
Normal
0.0
545
Tumor
0.0
538
Normal
0.0
341
Tumor
0.0
455
Tumor
0.0
361
Tumor
-0.1
1013
Tumor
-0.1
428
Normal
-0.1
513
Tumor
-0.1
878
Normal
-0.1
755
Tumor
-0.1
224
Normal
-0.1
923
Tumor
-0.1
145
Tumor
-0.1
387
Tumor
-0.1
355
Tumor
-0.1
1028
Normal
-0.1
425
Tumor
-0.1
951
Tumor
-0.1
436
Normal
-0.1
563
Tumor
-0.1
877
Tumor
-0.1
185
Tumor
-0.2
228
Normal
-0.2
1042
Normal
-0.2
627
Tumor
-0.2
497
Tumor
-0.2
721
Tumor
-0.2
131
Tumor
-0.2
232
Normal
-0.2
713
Tumor
-0.2
465
Tumor
-0.2
421
Tumor
-0.2
663
Tumor
-0.2
328
Normal
-0.2
494
Normal
-0.2
268
Normal
-0.2
714
Normal
-0.2
534
Normal
-0.2
448
Normal
-0.2
128
Normal
-0.2
937
Tumor
-0.2
161
Tumor
-0.2
474
Normal
-0.3
111
Normal
-0.3
524
Normal
-0.3
484
Normal
-0.3
258
Normal
-0.3
422
Normal
-0.3
356
Normal
-0.3
862
Normal
-0.3
922
Normal
-0.3
327
Tumor
-0.3
1045
Tumor
-0.3
262
Normal
-0.3
866
Normal
-0.3
938
Normal
-0.3
272
Normal
-0.3
882
Normal
-0.3
516
Normal
-0.3
351
Tumor
-0.3
423
Tumor
-0.3
874
Normal
-0.3
742
Normal
-0.3
956
Normal
-0.3
526
Normal
-0.3
1014
Normal
-0.3
124
Normal
-0.3
1046
Normal
-0.3
514
Normal
-0.3
284
Normal
-0.3
818
Normal
-0.3
964
Normal
-0.3
447
Tumor
-0.3
1016
Normal
-0.3
944
Normal
-0.3
698
Normal
-0.3
462
Normal
-0.3
1022
Normal
-0.3
451
Tumor
-0.4
492
Normal
-0.4
852
Normal
-0.4
286
Normal
-0.4
114
Normal
-0.4
554
Normal
-0.4
814
Normal
-0.4
375
Tumor
-0.4
746
Normal
-0.4
195
Tumor
-0.4
868
Normal
-0.4
744
Normal
-0.4
546
Normal
-0.4
816
Normal
-0.4
914
Normal
-0.4
1032
Normal
-0.4
982
Normal
-0.4
722
Normal
-0.4
724
Normal
-0.4
142
Normal
-0.4
952
Normal
-0.4
696
Normal
-0.4
466
Normal
-0.4
686
Normal
-0.4
464
Normal
-0.4
446
Normal
-0.4
353
Tumor
-0.4
912
Normal
-0.4
482
Normal
-0.4
518
Normal
-0.4
426
Normal
-0.4
432
Normal
-0.4
976
Normal
-0.4
297
Tumor
-0.4
212
Normal
-0.4
472
Normal
-0.4
148
Normal
-0.4
738
Normal
-0.4
955
Tumor
-0.4
172
Normal
-0.5
488
Normal
-0.5
858
Normal
-0.5
864
Normal
-0.5
187
Tumor
-0.5
223
Tumor
-0.5
916
Normal
-0.5
127
Tumor
-0.5
388
Normal
-0.5
314
Normal
-0.5
786
Normal
-0.5
126
Normal
-0.5
498
Normal
-0.5
1026
Normal
-0.5
978
Normal
-0.5
926
Normal
-0.5
136
Normal
-0.5
528
Normal
-0.5
728
Normal
-0.5
362
Normal
-0.5
1015
Tumor
-0.5
414
Normal
-0.5
968
Normal
-0.5
214
Normal
-0.5
965
Tumor
-0.5
424
Normal
-0.5
384
Normal
-0.5
298
Normal
-0.5
966
Normal
-0.5
132
Normal
-0.5
642
Normal
-0.5
196
Normal
-0.5
444
Normal
-0.5
222
Normal
-0.5
564
Normal
-0.5
572
Normal
-0.5
537
Tumor
-0.5
385
Tumor
-0.5
778
Normal
-0.5
958
Normal
-0.5
452
Normal
-0.5
218
Normal
-0.5
125
Tumor
-0.5
884
Normal
-0.5
984
Normal
-0.5
743
Tumor
-0.6
141
Tumor
-0.6
434
Normal
-0.6
468
Normal
-0.6
918
Normal
-0.6
716
Normal
-0.6
461
Tumor
-0.6
217
Tumor
-0.6
331
Tumor
-0.6
616
Normal
-0.6
278
Normal
-0.6
723
Tumor
-0.6
366
Normal
-0.6
186
Normal
-0.6
558
Normal
-0.6
395
Tumor
-0.6
138
Normal
-0.6
456
Normal
-0.6
967
Tumor
-0.6
386
Normal
-0.6
192
Normal
-0.6
665
Tumor
-0.6
392
Normal
-0.6
376
Normal
-0.6
568
Normal
-0.6
618
Normal
-0.6
463
Tumor
-0.6
342
Normal
-0.6
162
Normal
-0.6
396
Normal
-0.6
851
Tumor
-0.6
113
Tumor
-0.7
188
Normal
-0.7
924
Normal
-0.7
352
Normal
-0.7
1044
Normal
-0.7
536
Normal
-0.7
211
Tumor
-0.7
312
Normal
-0.7
756
Normal
-0.7
943
Tumor
-0.7
285
Tumor
-0.7
574
Normal
-0.7
617
Tumor
-0.7
628
Normal
-0.7
394
Normal
-0.7
358
Normal
-0.7
467
Tumor
-0.7
636
Normal
-0.8
146
Normal
-0.8
815
Tumor
-0.8
332
Normal
-0.8
344
Normal
-0.8
354
Normal
-0.8
368
Normal
-0.8
343
Tumor
-0.9
311
Tumor
-0.9
662
Normal
-0.9
917
Tumor
-0.9
391
Tumor
-0.9
283
Tumor
-1.0
648
Normal
-1.0
413
Tumor
-1.0
664
Normal
-1.0
672
Normal
-1.0
983
Tumor
-1.1
367
Tumor
-1.1
666
Normal
-1.1
671
Tumor
-1.2
535
Tumor
-1.3
661
Tumor
-1.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
