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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CHD1L is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
148.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
72.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
66.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
65.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
61.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
59.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
57.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
57.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
56.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
55.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
53.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
53.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
52.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
52.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
52.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
51.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
51.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
49.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
49.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
45.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
45.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
44.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
43.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
43.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
43.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
42.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
41.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
41.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
40.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
40.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
40.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
40.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
40.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
39.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
39.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
39.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
39.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
38.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
38.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
38.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
38.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
37.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
37.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
37.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
37.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
36.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
36.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
36.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
35.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
35.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
35.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
35.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
35.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
35.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
34.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
34.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
34.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
33.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
33.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
33.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
33.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
33.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
32.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
32.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
32.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
32.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
32.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
32.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
31.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
31.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
31.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
31.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
31.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
31.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
31.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
31.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
30.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
30.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
30.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
30.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
30.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
29.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
29.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
29.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
29.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
29.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
28.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
28.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
28.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
28.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
28.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
28.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
28.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
28.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
27.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
27.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
27.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
27.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
27.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
27.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
27.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
27.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
26.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
26.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
26.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
26.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
26.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
26.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
26.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
26.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
26.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
26.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
26.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
26.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
26.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
25.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
25.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
25.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
25.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
25.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
24.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
24.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
24.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
24.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
24.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
24.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
24.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
24.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
24.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
24.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
24.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
24.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
23.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
23.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
23.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
23.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
23.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
23.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
23.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
22.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
22.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
22.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
22.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
22.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
22.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
22.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
22.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
22.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
22.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
22.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
22.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
22.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
22.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
22.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
22.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
22.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
21.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
21.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
21.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
21.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
21.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
21.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
21.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
21.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
21.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
21.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
21.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
21.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
20.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
20.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
20.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
20.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
20.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
20.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
20.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
20.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
20.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
20.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
20.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
20.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
20.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
20.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
20.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
19.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
19.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
19.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
19.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
19.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
19.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
19.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
19.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
19.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
19.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
19.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
19.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
19.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
18.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
18.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
18.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
18.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
18.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
18.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
18.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
18.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
18.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
18.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
18.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
18.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
17.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
17.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
17.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
17.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
17.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
17.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
17.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
17.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
17.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
17.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
17.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
17.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
17.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
16.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
16.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
16.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
16.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
16.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
16.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
16.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
16.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
16.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
16.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
16.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
16.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
16.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
16.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
16.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
16.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
15.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
15.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
15.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
15.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
15.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
15.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
15.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
15.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
15.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
15.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
15.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
15.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
15.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
15.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
15.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
15.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
15.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
15.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
14.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
14.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
14.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
14.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
14.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
14.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
14.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
14.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
14.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
14.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
13.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
13.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
13.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
13.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
13.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
13.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
13.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
13.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
13.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
13.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
13.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
13.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
13.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
13.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
12.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
12.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
12.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
12.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
12.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
12.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
12.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
12.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
12.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
12.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
12.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
12.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
12.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
11.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
11.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
11.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
11.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
11.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
11.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
11.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
11.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
11.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
11.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
11.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
10.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
10.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
10.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
10.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
10.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
10.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
10.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
10.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
10.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
9.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
9.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
9.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
9.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
9.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
9.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
8.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
8.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
8.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
8.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
8.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
7.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
7.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
7.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
6.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CHD1L is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
30.4
Number of samples
231
Samples
Sample
Description
TPM
DO45257
0 years, male, NA, stage:3, alive, 810 days
161.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
90.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
85.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
82.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
74.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
71.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
62.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
61.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
61.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
60.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
59.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
58.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
57.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
57.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
56.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
55.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
55.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
53.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
52.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
52.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
50.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
50.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
49.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
49.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
49.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
49.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
49.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
48.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
48.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
48.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
47.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
46.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
45.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
45.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
44.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
44.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
44.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
44.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
44.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
42.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
42.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
42.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
42.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
42.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
42.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
41.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
41.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
41.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
40.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
40.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
40.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
39.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
39.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
39.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
39.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
39.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
39.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
38.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
38.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
38.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
38.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
37.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
37.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
37.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
36.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
36.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
36.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
36.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
35.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
35.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
34.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
34.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
34.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
34.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
34.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
34.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
34.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
34.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
34.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
34.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
33.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
33.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
33.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
32.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
32.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
32.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
32.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
31.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
31.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
31.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
30.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
30.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
30.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
30.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
30.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
30.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
30.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
30.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
30.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
30.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
29.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
29.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
29.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
29.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
29.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
28.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
28.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
28.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
28.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
28.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
28.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
28.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
28.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
28.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
27.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
27.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
26.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
26.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
26.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
26.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
26.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
26.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
26.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
26.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
26.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
26.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
26.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
25.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
25.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
25.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
25.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
25.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
25.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
24.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
24.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
24.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
24.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
24.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
24.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
23.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
23.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
23.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
22.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
22.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
22.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
22.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
21.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
21.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
21.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
21.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
21.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
21.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
21.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
21.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
21.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
21.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
21.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
21.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
21.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
21.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
20.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
20.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
20.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
20.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
20.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
20.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
19.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
19.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
19.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
19.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
19.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
19.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
19.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
19.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
18.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
18.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
18.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
18.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
18.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
18.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
18.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
18.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
17.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
17.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
17.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
17.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
16.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
16.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
16.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
16.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
16.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
15.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
15.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
15.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
15.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
15.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
15.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
15.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
14.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
14.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
14.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
14.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
14.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
14.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
13.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
13.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
13.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
13.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
12.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
12.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
12.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
12.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
11.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
11.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
11.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
11.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
10.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
10.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
9.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
8.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1021
Tumor
1.9
951
Tumor
1.4
313
Tumor
1.4
567
Tumor
1.4
387
Tumor
1.3
131
Tumor
1.3
357
Tumor
1.2
957
Tumor
1.2
743
Tumor
1.2
383
Tumor
1.1
517
Tumor
1.1
635
Tumor
1.1
425
Tumor
1.0
161
Tumor
1.0
975
Tumor
0.9
685
Tumor
0.9
473
Tumor
0.9
231
Tumor
0.9
331
Tumor
0.9
135
Tumor
0.8
817
Tumor
0.8
921
Tumor
0.8
411
Tumor
0.8
525
Tumor
0.8
663
Tumor
0.7
213
Tumor
0.7
1031
Tumor
0.7
877
Tumor
0.7
147
Tumor
0.7
277
Tumor
0.7
881
Tumor
0.7
427
Tumor
0.7
297
Tumor
0.7
483
Tumor
0.7
445
Tumor
0.7
661
Tumor
0.6
865
Tumor
0.6
571
Tumor
0.6
1013
Tumor
0.6
573
Tumor
0.6
385
Tumor
0.6
527
Tumor
0.6
361
Tumor
0.6
271
Tumor
0.6
355
Tumor
0.6
477
Tumor
0.6
435
Tumor
0.5
545
Tumor
0.5
351
Tumor
0.5
487
Tumor
0.5
777
Tumor
0.5
965
Tumor
0.5
815
Tumor
0.5
697
Tumor
0.5
443
Tumor
0.5
953
Tumor
0.5
627
Tumor
0.5
925
Tumor
0.5
1027
Tumor
0.4
497
Tumor
0.4
665
Tumor
0.4
515
Tumor
0.4
537
Tumor
0.4
553
Tumor
0.4
923
Tumor
0.4
513
Tumor
0.4
455
Tumor
0.4
413
Tumor
0.4
451
Tumor
0.4
493
Tumor
0.4
185
Tumor
0.3
415
Tumor
0.3
724
Normal
0.3
367
Tumor
0.3
618
Normal
0.3
647
Tumor
0.3
433
Tumor
0.3
375
Tumor
0.3
628
Normal
0.3
221
Tumor
0.2
883
Tumor
0.2
721
Tumor
0.2
363
Tumor
0.2
813
Tumor
0.2
171
Tumor
0.2
715
Tumor
0.2
227
Tumor
0.2
283
Tumor
0.2
983
Tumor
0.2
917
Tumor
0.2
814
Normal
0.2
523
Tumor
0.1
467
Tumor
0.1
191
Tumor
0.1
755
Tumor
0.1
785
Tumor
0.1
491
Tumor
0.1
391
Tumor
0.1
421
Tumor
0.1
465
Tumor
0.1
915
Tumor
0.1
873
Tumor
0.1
431
Tumor
0.1
365
Tumor
0.1
463
Tumor
0.1
217
Tumor
0.1
341
Tumor
0.1
187
Tumor
0.1
471
Tumor
0.1
358
Normal
0.0
127
Tumor
0.0
384
Normal
0.0
112
Tumor
0.0
636
Normal
0.0
327
Tumor
0.0
727
Tumor
0.0
137
Tumor
0.0
393
Tumor
0.0
666
Normal
0.0
617
Tumor
0.0
977
Tumor
0.0
395
Tumor
0.0
414
Normal
0.0
257
Tumor
0.0
857
Tumor
0.0
222
Normal
-0.1
648
Normal
-0.1
867
Tumor
-0.1
311
Tumor
-0.1
963
Tumor
-0.1
195
Tumor
-0.1
563
Tumor
-0.1
446
Normal
-0.1
713
Tumor
-0.1
641
Tumor
-0.1
533
Tumor
-0.1
426
Normal
-0.1
664
Normal
-0.1
422
Normal
-0.1
428
Normal
-0.1
423
Tumor
-0.1
745
Tumor
-0.1
913
Tumor
-0.1
314
Normal
-0.1
186
Normal
-0.1
424
Normal
-0.1
416
Normal
-0.1
366
Normal
-0.1
343
Tumor
-0.2
172
Normal
-0.2
823
Tumor
-0.2
356
Normal
-0.2
214
Normal
-0.2
162
Normal
-0.2
863
Tumor
-0.2
362
Normal
-0.2
278
Normal
-0.2
851
Tumor
-0.2
662
Normal
-0.2
148
Normal
-0.2
285
Tumor
-0.2
386
Normal
-0.2
192
Normal
-0.2
388
Normal
-0.2
535
Tumor
-0.2
145
Tumor
-0.2
911
Tumor
-0.2
568
Normal
-0.2
312
Normal
-0.2
671
Tumor
-0.2
136
Normal
-0.2
328
Normal
-0.2
434
Normal
-0.2
354
Normal
-0.2
123
Tumor
-0.2
818
Normal
-0.2
376
Normal
-0.2
396
Normal
-0.2
744
Normal
-0.2
132
Normal
-0.2
557
Tumor
-0.2
456
Normal
-0.2
884
Normal
-0.2
353
Tumor
-0.2
364
Normal
-0.2
737
Tumor
-0.2
138
Normal
-0.2
432
Normal
-0.2
616
Normal
-0.2
141
Tumor
-0.2
858
Normal
-0.2
272
Normal
-0.3
412
Normal
-0.3
267
Tumor
-0.3
436
Normal
-0.3
466
Normal
-0.3
943
Tumor
-0.3
188
Normal
-0.3
964
Normal
-0.3
572
Normal
-0.3
125
Tumor
-0.3
196
Normal
-0.3
223
Tumor
-0.3
472
Normal
-0.3
756
Normal
-0.3
146
Normal
-0.3
224
Normal
-0.3
394
Normal
-0.3
944
Normal
-0.3
298
Normal
-0.3
952
Normal
-0.3
332
Normal
-0.3
558
Normal
-0.3
484
Normal
-0.3
741
Tumor
-0.3
864
Normal
-0.3
286
Normal
-0.4
284
Normal
-0.4
262
Normal
-0.4
392
Normal
-0.4
464
Normal
-0.4
882
Normal
-0.4
723
Tumor
-0.4
211
Tumor
-0.4
528
Normal
-0.4
218
Normal
-0.4
642
Normal
-0.4
1043
Tumor
-0.4
468
Normal
-0.4
352
Normal
-0.4
564
Normal
-0.4
956
Normal
-0.4
344
Normal
-0.4
342
Normal
-0.4
447
Tumor
-0.4
261
Tumor
-0.4
1032
Normal
-0.4
1022
Normal
-0.4
1045
Tumor
-0.4
976
Normal
-0.4
232
Normal
-0.4
816
Normal
-0.4
786
Normal
-0.4
738
Normal
-0.4
955
Tumor
-0.4
474
Normal
-0.4
494
Normal
-0.4
714
Normal
-0.4
852
Normal
-0.4
916
Normal
-0.4
672
Normal
-0.4
444
Normal
-0.5
574
Normal
-0.5
478
Normal
-0.5
516
Normal
-0.5
228
Normal
-0.5
728
Normal
-0.5
514
Normal
-0.5
1041
Tumor
-0.5
615
Tumor
-0.5
518
Normal
-0.5
868
Normal
-0.5
113
Tumor
-0.5
462
Normal
-0.5
716
Normal
-0.5
862
Normal
-0.5
914
Normal
-0.5
722
Normal
-0.5
452
Normal
-0.5
912
Normal
-0.5
461
Tumor
-0.5
861
Tumor
-0.5
824
Normal
-0.5
918
Normal
-0.5
481
Tumor
-0.5
368
Normal
-0.5
536
Normal
-0.5
492
Normal
-0.5
878
Normal
-0.5
482
Normal
-0.5
966
Normal
-0.5
212
Normal
-0.5
114
Normal
-0.5
778
Normal
-0.5
268
Normal
-0.5
874
Normal
-0.5
978
Normal
-0.5
1015
Tumor
-0.5
938
Normal
-0.5
954
Normal
-0.5
742
Normal
-0.6
696
Normal
-0.6
1046
Normal
-0.6
967
Tumor
-0.6
958
Normal
-0.6
258
Normal
-0.6
922
Normal
-0.6
984
Normal
-0.6
126
Normal
-0.6
698
Normal
-0.6
1014
Normal
-0.6
128
Normal
-0.6
982
Normal
-0.6
488
Normal
-0.7
866
Normal
-0.7
142
Normal
-0.7
1025
Tumor
-0.7
498
Normal
-0.7
538
Normal
-0.7
1026
Normal
-0.7
1044
Normal
-0.7
695
Tumor
-0.7
926
Normal
-0.7
981
Tumor
-0.7
924
Normal
-0.7
686
Normal
-0.7
746
Normal
-0.7
111
Normal
-0.8
526
Normal
-0.8
124
Normal
-0.8
968
Normal
-0.8
1042
Normal
-0.8
937
Tumor
-0.8
1016
Normal
-0.8
524
Normal
-0.8
1028
Normal
-0.8
448
Normal
-0.9
546
Normal
-0.9
554
Normal
-1.0
534
Normal
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
