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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TOP2A is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
115.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
113.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
105.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
102.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
84.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
79.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
76.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
73.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
72.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
69.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
65.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
64.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
64.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
61.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
59.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
58.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
58.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
55.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
55.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
55.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
54.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
54.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
51.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
49.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
49.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
46.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
43.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
43.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
43.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
42.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
42.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
42.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
41.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
41.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
40.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
39.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
38.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
38.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
38.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
37.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
37.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
36.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
36.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
35.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
35.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
34.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
34.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
34.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
34.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
34.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
33.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
33.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
33.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
32.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
32.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
31.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
31.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
30.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
30.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
30.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
30.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
29.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
29.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
27.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
27.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
27.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
27.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
27.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
27.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
27.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
26.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
26.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
26.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
26.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
26.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
26.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
25.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
25.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
25.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
25.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
25.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
25.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
25.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
25.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
24.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
23.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
23.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
23.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
23.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
22.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
22.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
22.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
22.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
22.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
21.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
21.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
21.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
21.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
20.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
20.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
20.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
20.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
20.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
20.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
19.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
19.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
18.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
18.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
18.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
18.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
18.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
18.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
17.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
17.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
17.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
17.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
17.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
16.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
16.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
16.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
16.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
15.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
15.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
15.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
15.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
15.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
15.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
15.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
15.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
14.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
14.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
14.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
14.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
14.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
14.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
13.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
13.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
13.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
13.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
13.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
13.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
13.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
13.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
12.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
12.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
12.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
12.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
12.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
12.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
12.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
12.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
12.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
11.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
11.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
11.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
11.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
11.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
11.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
11.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
11.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
11.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
11.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
10.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
10.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
10.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
10.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
10.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
10.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
10.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
10.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
9.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
9.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
9.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
9.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
8.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
8.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
8.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
8.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
8.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
8.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
8.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
8.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
8.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
8.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
7.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
7.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
7.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
7.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
7.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
6.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
6.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
6.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
6.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
5.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
5.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
5.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
4.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
4.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
4.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
4.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
4.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
3.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
3.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
3.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
3.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
3.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
3.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
3.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
2.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
2.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
2.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
2.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
2.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
2.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
2.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
2.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
2.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
2.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
2.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
2.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
2.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
2.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
1.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
1.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
1.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
1.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
1.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
1.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
1.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
1.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
1.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
1.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
1.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
1.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
1.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
1.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
1.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
1.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
1.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
1.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
1.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
1.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TOP2A is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.6
Number of samples
231
Samples
Sample
Description
TPM
DO45127
0 years, male, NA, stage:3, dead, 420 days
92.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
70.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
63.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
50.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
47.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
47.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
42.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
41.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
39.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
38.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
36.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
35.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
35.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
35.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
33.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
32.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
30.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
30.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
29.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
28.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
28.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
28.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
28.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
26.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
26.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
25.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
25.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
24.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
23.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
22.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
22.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
22.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
22.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
22.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
21.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
21.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
21.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
21.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
20.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
20.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
20.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
20.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
19.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
19.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
19.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
18.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
18.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
18.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
17.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
17.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
17.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
16.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
16.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
16.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
16.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
15.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
15.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
15.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
15.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
14.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
14.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
14.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
14.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
14.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
14.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
14.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
13.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
13.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
13.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
13.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
13.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
13.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
13.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
12.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
12.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
12.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
12.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
11.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
11.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
11.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
11.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
11.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
10.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
10.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
10.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
10.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
10.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
9.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
9.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
8.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
8.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
8.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
8.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
8.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
8.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
7.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
7.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
7.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
7.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
7.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
6.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
6.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
6.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
6.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
5.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
5.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
5.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
5.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
5.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
4.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
4.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
4.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
4.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
4.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
4.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
3.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
3.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
3.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
3.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
3.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
3.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
3.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
3.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
3.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
3.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
3.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
3.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
3.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
3.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
3.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
3.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
3.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
3.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
2.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
2.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
2.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
2.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
2.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
2.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
2.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
2.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
2.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
2.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
2.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
2.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
2.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
2.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
2.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
2.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
2.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
2.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
2.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
1.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
1.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
1.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
1.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
1.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
1.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
1.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
1.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
1.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
1.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
1.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
1.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
1.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
1.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
1.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
1.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
1.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
1.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
1.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
0.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
463
Tumor
2.2
351
Tumor
2.1
727
Tumor
2.1
983
Tumor
1.8
965
Tumor
1.7
567
Tumor
1.5
1013
Tumor
1.5
661
Tumor
1.5
497
Tumor
1.4
367
Tumor
1.4
411
Tumor
1.4
957
Tumor
1.4
277
Tumor
1.4
161
Tumor
1.4
537
Tumor
1.3
435
Tumor
1.3
285
Tumor
1.3
865
Tumor
1.2
743
Tumor
1.2
923
Tumor
1.2
385
Tumor
1.1
671
Tumor
1.1
357
Tumor
1.1
951
Tumor
1.1
283
Tumor
1.1
813
Tumor
1.0
425
Tumor
1.0
953
Tumor
0.9
943
Tumor
0.9
523
Tumor
0.8
525
Tumor
0.8
663
Tumor
0.8
1021
Tumor
0.8
131
Tumor
0.8
427
Tumor
0.8
695
Tumor
0.7
517
Tumor
0.7
647
Tumor
0.7
341
Tumor
0.7
535
Tumor
0.7
125
Tumor
0.7
313
Tumor
0.7
391
Tumor
0.6
127
Tumor
0.6
355
Tumor
0.6
123
Tumor
0.6
815
Tumor
0.6
977
Tumor
0.6
573
Tumor
0.6
331
Tumor
0.6
447
Tumor
0.6
724
Normal
0.6
413
Tumor
0.6
343
Tumor
0.5
171
Tumor
0.5
737
Tumor
0.5
491
Tumor
0.5
213
Tumor
0.5
493
Tumor
0.5
257
Tumor
0.5
814
Normal
0.5
375
Tumor
0.4
817
Tumor
0.4
487
Tumor
0.4
877
Tumor
0.4
443
Tumor
0.4
112
Tumor
0.3
967
Tumor
0.3
483
Tumor
0.3
917
Tumor
0.3
211
Tumor
0.3
445
Tumor
0.3
883
Tumor
0.3
527
Tumor
0.3
697
Tumor
0.3
1031
Tumor
0.2
227
Tumor
0.2
665
Tumor
0.2
271
Tumor
0.2
431
Tumor
0.2
267
Tumor
0.2
141
Tumor
0.2
387
Tumor
0.2
297
Tumor
0.2
921
Tumor
0.2
881
Tumor
0.2
311
Tumor
0.1
963
Tumor
0.1
873
Tumor
0.1
975
Tumor
0.1
571
Tumor
0.1
755
Tumor
0.1
393
Tumor
0.1
741
Tumor
0.1
685
Tumor
0.1
361
Tumor
0.1
135
Tumor
0.0
937
Tumor
0.0
433
Tumor
0.0
713
Tumor
0.0
185
Tumor
0.0
861
Tumor
0.0
635
Tumor
0.0
615
Tumor
0.0
461
Tumor
0.0
1027
Tumor
0.0
423
Tumor
0.0
187
Tumor
-0.1
217
Tumor
-0.1
851
Tumor
-0.1
455
Tumor
-0.1
857
Tumor
-0.1
147
Tumor
-0.1
777
Tumor
-0.1
421
Tumor
-0.2
231
Tumor
-0.2
533
Tumor
-0.2
467
Tumor
-0.2
223
Tumor
-0.2
471
Tumor
-0.2
383
Tumor
-0.2
863
Tumor
-0.2
1043
Tumor
-0.2
477
Tumor
-0.2
221
Tumor
-0.2
641
Tumor
-0.2
498
Normal
-0.2
465
Tumor
-0.3
473
Tumor
-0.3
785
Tumor
-0.3
352
Normal
-0.3
538
Normal
-0.3
1015
Tumor
-0.3
823
Tumor
-0.3
745
Tumor
-0.3
966
Normal
-0.3
545
Tumor
-0.3
1014
Normal
-0.4
721
Tumor
-0.4
113
Tumor
-0.4
358
Normal
-0.4
978
Normal
-0.4
434
Normal
-0.4
145
Tumor
-0.4
981
Tumor
-0.4
913
Tumor
-0.4
137
Tumor
-0.4
368
Normal
-0.4
715
Tumor
-0.4
132
Normal
-0.4
563
Tumor
-0.4
412
Normal
-0.4
867
Tumor
-0.4
464
Normal
-0.4
415
Tumor
-0.4
515
Tumor
-0.5
984
Normal
-0.5
365
Tumor
-0.5
451
Tumor
-0.5
191
Tumor
-0.5
478
Normal
-0.5
136
Normal
-0.5
354
Normal
-0.5
553
Tumor
-0.5
384
Normal
-0.5
261
Tumor
-0.5
911
Tumor
-0.5
353
Tumor
-0.5
162
Normal
-0.5
342
Normal
-0.5
146
Normal
-0.5
744
Normal
-0.5
636
Normal
-0.5
344
Normal
-0.5
672
Normal
-0.5
192
Normal
-0.5
363
Tumor
-0.5
728
Normal
-0.5
195
Tumor
-0.5
188
Normal
-0.5
142
Normal
-0.5
1045
Tumor
-0.5
557
Tumor
-0.5
214
Normal
-0.5
696
Normal
-0.6
436
Normal
-0.6
617
Tumor
-0.6
332
Normal
-0.6
662
Normal
-0.6
314
Normal
-0.6
172
Normal
-0.6
524
Normal
-0.6
492
Normal
-0.6
481
Tumor
-0.6
866
Normal
-0.6
982
Normal
-0.6
138
Normal
-0.6
284
Normal
-0.6
723
Tumor
-0.6
428
Normal
-0.6
513
Tumor
-0.6
954
Normal
-0.6
312
Normal
-0.6
426
Normal
-0.6
392
Normal
-0.6
386
Normal
-0.6
366
Normal
-0.6
964
Normal
-0.6
1016
Normal
-0.6
526
Normal
-0.6
444
Normal
-0.6
976
Normal
-0.6
224
Normal
-0.6
488
Normal
-0.6
456
Normal
-0.6
756
Normal
-0.6
536
Normal
-0.6
952
Normal
-0.6
424
Normal
-0.6
958
Normal
-0.6
924
Normal
-0.6
268
Normal
-0.7
196
Normal
-0.7
186
Normal
-0.7
148
Normal
-0.7
394
Normal
-0.7
356
Normal
-0.7
925
Tumor
-0.7
278
Normal
-0.7
494
Normal
-0.7
738
Normal
-0.7
298
Normal
-0.7
778
Normal
-0.7
884
Normal
-0.7
448
Normal
-0.7
468
Normal
-0.7
878
Normal
-0.7
944
Normal
-0.7
912
Normal
-0.7
414
Normal
-0.7
446
Normal
-0.7
882
Normal
-0.7
232
Normal
-0.7
432
Normal
-0.7
546
Normal
-0.7
124
Normal
-0.7
628
Normal
-0.7
286
Normal
-0.7
664
Normal
-0.7
262
Normal
-0.7
126
Normal
-0.7
666
Normal
-0.7
648
Normal
-0.7
328
Normal
-0.7
554
Normal
-0.7
228
Normal
-0.7
376
Normal
-0.7
627
Tumor
-0.7
362
Normal
-0.8
1025
Tumor
-0.8
364
Normal
-0.8
616
Normal
-0.8
915
Tumor
-0.8
484
Normal
-0.8
938
Normal
-0.8
618
Normal
-0.8
528
Normal
-0.8
722
Normal
-0.8
272
Normal
-0.8
114
Normal
-0.8
968
Normal
-0.8
742
Normal
-0.8
642
Normal
-0.8
388
Normal
-0.8
786
Normal
-0.8
416
Normal
-0.8
534
Normal
-0.8
466
Normal
-0.8
218
Normal
-0.8
914
Normal
-0.8
422
Normal
-0.8
474
Normal
-0.8
128
Normal
-0.8
568
Normal
-0.8
212
Normal
-0.8
1032
Normal
-0.8
714
Normal
-0.8
574
Normal
-0.8
514
Normal
-0.8
956
Normal
-0.8
258
Normal
-0.8
396
Normal
-0.8
472
Normal
-0.8
874
Normal
-0.9
518
Normal
-0.9
862
Normal
-0.9
1041
Tumor
-0.9
686
Normal
-0.9
452
Normal
-0.9
864
Normal
-0.9
564
Normal
-0.9
327
Tumor
-0.9
111
Normal
-0.9
916
Normal
-0.9
395
Tumor
-0.9
516
Normal
-0.9
1044
Normal
-0.9
558
Normal
-0.9
222
Normal
-0.9
716
Normal
-0.9
818
Normal
-0.9
572
Normal
-0.9
926
Normal
-0.9
746
Normal
-0.9
482
Normal
-0.9
698
Normal
-0.9
922
Normal
-1.0
1046
Normal
-1.0
955
Tumor
-1.0
858
Normal
-1.0
462
Normal
-1.0
868
Normal
-1.0
852
Normal
-1.0
918
Normal
-1.0
1026
Normal
-1.0
1028
Normal
-1.1
824
Normal
-1.1
816
Normal
-1.2
1042
Normal
-1.3
1022
Normal
-1.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
