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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ACAP3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
22.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
21.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
19.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
19.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
18.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
17.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
16.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
16.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
16.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
16.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
16.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
15.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
15.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
15.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
15.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
15.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
15.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
14.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
14.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
13.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
13.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
13.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
13.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
12.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
12.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
12.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
12.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
12.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
11.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
11.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
11.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
11.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
11.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
10.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
10.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
10.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
10.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
10.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
10.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
10.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
10.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
10.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
10.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
10.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
10.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
9.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
9.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
9.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
9.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
9.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
9.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
9.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
9.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
9.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
8.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
8.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
8.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
8.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
8.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
8.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
8.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
7.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
7.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
7.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
7.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
7.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
7.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
7.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
7.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
7.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
7.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
7.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
7.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
7.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
7.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
6.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
6.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
6.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
6.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
6.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
5.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
5.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
5.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
5.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
5.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
5.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
5.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
5.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
5.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
5.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
5.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
5.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
5.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
5.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
5.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
5.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
5.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
5.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
5.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
5.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
5.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
4.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
4.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
4.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
4.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
4.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
4.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
4.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
4.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
4.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
4.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
4.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
4.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
4.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
3.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
3.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
3.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
3.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
3.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
3.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
3.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
3.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
3.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
3.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
3.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
3.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
3.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
3.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
3.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
3.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
2.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
2.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
2.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
2.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
2.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
2.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
2.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
2.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
2.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
2.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
2.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
2.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
2.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
2.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
2.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
2.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
1.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
1.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
1.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ACAP3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.6
Number of samples
231
Samples
Sample
Description
TPM
DO45101
0 years, male, NA, stage:2, alive, 1680 days
49.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
42.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
41.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
38.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
30.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
30.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
29.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
27.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
26.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
26.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
24.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
24.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
23.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
23.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
23.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
23.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
22.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
22.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
22.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
22.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
20.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
20.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
19.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
19.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
19.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
18.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
18.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
18.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
18.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
17.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
17.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
17.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
16.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
16.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
16.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
16.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
16.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
16.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
16.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
16.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
16.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
15.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
15.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
15.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
15.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
15.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
14.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
14.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
14.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
14.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
14.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
14.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
13.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
13.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
13.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
13.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
13.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
13.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
13.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
13.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
13.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
13.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
12.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
12.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
12.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
12.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
12.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
11.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
11.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
11.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
11.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
11.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
11.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
11.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
10.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
10.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
10.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
10.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
10.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
10.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
10.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
10.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
9.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
9.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
9.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
9.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
9.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
9.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
9.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
9.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
9.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
9.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
9.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
9.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
8.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
8.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
8.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
8.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
8.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
8.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
8.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
8.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
8.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
7.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
7.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
7.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
7.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
7.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
7.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
7.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
7.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
7.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
6.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
6.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
6.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
6.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
6.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
6.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
6.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
6.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
6.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
6.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
6.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
5.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
5.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
5.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
5.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
5.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
5.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
5.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
5.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
5.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
5.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
5.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
4.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
4.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
4.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
4.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
4.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
4.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
4.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
4.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
4.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
3.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
3.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
3.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
3.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
3.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
3.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
3.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
3.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
3.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
3.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
2.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
2.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
2.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
2.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
2.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
2.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
2.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
2.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
2.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
1.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
813
Tumor
0.9
778
Normal
0.8
786
Normal
0.8
425
Tumor
0.7
756
Normal
0.6
777
Tumor
0.5
642
Normal
0.5
368
Normal
0.5
785
Tumor
0.5
814
Normal
0.4
384
Normal
0.4
628
Normal
0.4
627
Tumor
0.4
554
Normal
0.4
366
Normal
0.4
492
Normal
0.4
491
Tumor
0.4
362
Normal
0.4
574
Normal
0.4
636
Normal
0.4
635
Tumor
0.3
456
Normal
0.3
434
Normal
0.3
464
Normal
0.3
746
Normal
0.3
311
Tumor
0.3
444
Normal
0.3
497
Tumor
0.3
283
Tumor
0.3
112
Tumor
0.3
446
Normal
0.3
376
Normal
0.3
412
Normal
0.3
618
Normal
0.3
525
Tumor
0.3
466
Normal
0.3
261
Tumor
0.3
465
Tumor
0.3
671
Tumor
0.3
468
Normal
0.2
727
Tumor
0.2
616
Normal
0.2
914
Normal
0.2
755
Tumor
0.2
361
Tumor
0.2
951
Tumor
0.2
956
Normal
0.2
272
Normal
0.2
432
Normal
0.2
1016
Normal
0.2
568
Normal
0.2
421
Tumor
0.2
493
Tumor
0.2
452
Normal
0.2
212
Normal
0.2
367
Tumor
0.2
124
Normal
0.2
741
Tumor
0.1
1027
Tumor
0.1
516
Normal
0.1
617
Tumor
0.1
564
Normal
0.1
431
Tumor
0.1
964
Normal
0.1
1015
Tumor
0.1
534
Normal
0.1
663
Tumor
0.1
983
Tumor
0.1
114
Normal
0.1
435
Tumor
0.1
981
Tumor
0.1
958
Normal
0.1
395
Tumor
0.1
484
Normal
0.1
445
Tumor
0.1
483
Tumor
0.1
416
Normal
0.1
648
Normal
0.1
433
Tumor
0.1
258
Normal
0.1
331
Tumor
0.1
563
Tumor
0.1
436
Normal
0.1
977
Tumor
0.1
515
Tumor
0.1
533
Tumor
0.1
451
Tumor
0.1
357
Tumor
0.1
385
Tumor
0.1
535
Tumor
0.1
513
Tumor
0.1
356
Normal
0.1
343
Tumor
0.1
912
Normal
0.0
661
Tumor
0.0
365
Tumor
0.0
743
Tumor
0.0
1021
Tumor
0.0
1028
Normal
0.0
976
Normal
0.0
817
Tumor
0.0
558
Normal
0.0
917
Tumor
0.0
364
Normal
0.0
943
Tumor
0.0
863
Tumor
0.0
224
Normal
0.0
171
Tumor
0.0
546
Normal
0.0
328
Normal
0.0
387
Tumor
0.0
952
Normal
0.0
641
Tumor
0.0
286
Normal
0.0
573
Tumor
0.0
537
Tumor
0.0
553
Tumor
0.0
214
Normal
0.0
538
Normal
0.0
415
Tumor
0.0
1026
Normal
0.0
536
Normal
0.0
1042
Normal
0.0
697
Tumor
0.0
572
Normal
0.0
383
Tumor
0.0
111
Normal
0.0
262
Normal
0.0
737
Tumor
0.0
185
Tumor
0.0
228
Normal
0.0
463
Tumor
0.0
685
Tumor
0.0
615
Tumor
0.0
524
Normal
0.0
342
Normal
0.0
953
Tumor
0.0
884
Normal
0.0
865
Tumor
0.0
955
Tumor
0.0
498
Normal
0.0
413
Tumor
0.0
864
Normal
0.0
966
Normal
0.0
523
Tumor
-0.1
666
Normal
-0.1
728
Normal
-0.1
982
Normal
-0.1
938
Normal
-0.1
816
Normal
-0.1
722
Normal
-0.1
278
Normal
-0.1
874
Normal
-0.1
571
Tumor
-0.1
744
Normal
-0.1
921
Tumor
-0.1
915
Tumor
-0.1
341
Tumor
-0.1
192
Normal
-0.1
284
Normal
-0.1
724
Normal
-0.1
448
Normal
-0.1
647
Tumor
-0.1
738
Normal
-0.1
363
Tumor
-0.1
427
Tumor
-0.1
723
Tumor
-0.1
937
Tumor
-0.1
298
Normal
-0.1
277
Tumor
-0.1
518
Normal
-0.1
113
Tumor
-0.1
698
Normal
-0.1
862
Normal
-0.1
411
Tumor
-0.1
213
Tumor
-0.1
232
Normal
-0.1
867
Tumor
-0.1
968
Normal
-0.1
866
Normal
-0.1
527
Tumor
-0.1
488
Normal
-0.1
567
Tumor
-0.1
424
Normal
-0.1
223
Tumor
-0.2
858
Normal
-0.2
662
Normal
-0.2
271
Tumor
-0.2
422
Normal
-0.2
695
Tumor
-0.2
257
Tumor
-0.2
1043
Tumor
-0.2
1045
Tumor
-0.2
128
Normal
-0.2
664
Normal
-0.2
123
Tumor
-0.2
857
Tumor
-0.2
716
Normal
-0.2
686
Normal
-0.2
221
Tumor
-0.2
211
Tumor
-0.2
125
Tumor
-0.2
852
Normal
-0.2
297
Tumor
-0.2
1031
Tumor
-0.2
721
Tumor
-0.2
742
Normal
-0.2
312
Normal
-0.2
344
Normal
-0.2
868
Normal
-0.2
327
Tumor
-0.2
557
Tumor
-0.2
218
Normal
-0.2
528
Normal
-0.2
358
Normal
-0.2
494
Normal
-0.2
882
Normal
-0.2
231
Tumor
-0.2
861
Tumor
-0.2
196
Normal
-0.2
926
Normal
-0.2
851
Tumor
-0.2
824
Normal
-0.2
414
Normal
-0.2
714
Normal
-0.2
227
Tumor
-0.2
1032
Normal
-0.2
818
Normal
-0.2
526
Normal
-0.2
467
Tumor
-0.2
963
Tumor
-0.2
924
Normal
-0.2
426
Normal
-0.2
354
Normal
-0.3
922
Normal
-0.3
916
Normal
-0.3
423
Tumor
-0.3
428
Normal
-0.3
1046
Normal
-0.3
126
Normal
-0.3
355
Tumor
-0.3
918
Normal
-0.3
386
Normal
-0.3
545
Tumor
-0.3
222
Normal
-0.3
713
Tumor
-0.3
351
Tumor
-0.3
967
Tumor
-0.3
147
Tumor
-0.3
873
Tumor
-0.3
957
Tumor
-0.3
161
Tumor
-0.3
913
Tumor
-0.3
172
Normal
-0.3
965
Tumor
-0.3
696
Normal
-0.3
1044
Normal
-0.3
447
Tumor
-0.3
1022
Normal
-0.3
672
Normal
-0.3
268
Normal
-0.3
1041
Tumor
-0.3
353
Tumor
-0.3
127
Tumor
-0.3
487
Tumor
-0.3
1013
Tumor
-0.3
162
Normal
-0.4
455
Tumor
-0.4
878
Normal
-0.4
443
Tumor
-0.4
745
Tumor
-0.4
975
Tumor
-0.4
217
Tumor
-0.4
314
Normal
-0.4
815
Tumor
-0.4
391
Tumor
-0.4
332
Normal
-0.4
944
Normal
-0.4
923
Tumor
-0.4
352
Normal
-0.4
517
Tumor
-0.4
195
Tumor
-0.4
392
Normal
-0.4
267
Tumor
-0.4
715
Tumor
-0.4
186
Normal
-0.5
665
Tumor
-0.5
396
Normal
-0.5
984
Normal
-0.5
877
Tumor
-0.5
1014
Normal
-0.5
514
Normal
-0.5
954
Normal
-0.5
393
Tumor
-0.5
375
Tumor
-0.6
188
Normal
-0.6
881
Tumor
-0.6
148
Normal
-0.6
925
Tumor
-0.6
823
Tumor
-0.6
1025
Tumor
-0.6
191
Tumor
-0.7
313
Tumor
-0.7
388
Normal
-0.7
394
Normal
-0.7
883
Tumor
-0.8
978
Normal
-0.8
187
Tumor
-0.8
285
Tumor
-0.9
911
Tumor
-1.1
471
Tumor
N/A
472
Normal
N/A
473
Tumor
N/A
474
Normal
N/A
477
Tumor
N/A
478
Normal
N/A
481
Tumor
N/A
482
Normal
N/A
131
Tumor
N/A
132
Normal
N/A
135
Tumor
N/A
136
Normal
N/A
137
Tumor
N/A
138
Normal
N/A
141
Tumor
N/A
142
Normal
N/A
145
Tumor
N/A
146
Normal
N/A
461
Tumor
N/A
462
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
