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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RBSN is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
3.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
9.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
8.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
8.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
8.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
8.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
7.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
7.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
7.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
7.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
7.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
7.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
6.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
6.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
6.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
6.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
6.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
6.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
6.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
6.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
6.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
6.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
5.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
5.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
5.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
5.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
5.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
5.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
5.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
5.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
5.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
5.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
5.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
5.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
5.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
5.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
5.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
5.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
5.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
5.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
5.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
5.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
5.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
5.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
5.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
5.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
4.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
4.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
4.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
4.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
4.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
4.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
4.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
4.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
4.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
4.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
4.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
4.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
4.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
4.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
4.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
4.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
4.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
4.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
4.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
4.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
4.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
4.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
4.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
4.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
4.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
4.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
4.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
4.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
4.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
4.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
4.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
4.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
4.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
4.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
4.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
3.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
3.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
3.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
3.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
3.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
3.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
3.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
3.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
3.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
3.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
3.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
3.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
3.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
3.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
3.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
3.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
3.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
3.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
3.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
3.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
3.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
3.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
3.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
3.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
3.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
3.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
3.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
3.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
3.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
3.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
3.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
3.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
3.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
3.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
3.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
3.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
3.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
3.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
3.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
3.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
3.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
3.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
3.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
3.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
3.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
3.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
3.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
2.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
2.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
2.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
2.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
2.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
2.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
2.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
2.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
2.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
2.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
2.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
2.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
2.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
2.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
2.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
2.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
2.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
2.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
2.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
2.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
2.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
2.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
2.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
2.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
2.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
2.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
2.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
2.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
2.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
2.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
2.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
2.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
2.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
2.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
2.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
2.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
2.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
2.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
2.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
2.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
2.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
2.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
2.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
2.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
2.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
2.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
2.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
1.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
1.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
1.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
1.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
192
Normal
0.5
131
Tumor
0.5
124
Normal
0.5
351
Tumor
0.4
484
Normal
0.4
536
Normal
0.4
431
Tumor
0.4
473
Tumor
0.4
737
Tumor
0.4
567
Tumor
0.3
444
Normal
0.3
958
Normal
0.3
332
Normal
0.3
968
Normal
0.3
696
Normal
0.3
723
Tumor
0.3
516
Normal
0.3
944
Normal
0.3
312
Normal
0.3
161
Tumor
0.3
744
Normal
0.3
524
Normal
0.3
952
Normal
0.3
488
Normal
0.3
354
Normal
0.3
452
Normal
0.3
498
Normal
0.3
214
Normal
0.3
518
Normal
0.3
232
Normal
0.3
857
Tumor
0.3
278
Normal
0.3
356
Normal
0.3
112
Tumor
0.3
918
Normal
0.3
523
Tumor
0.3
924
Normal
0.3
981
Tumor
0.3
984
Normal
0.3
344
Normal
0.3
818
Normal
0.3
125
Tumor
0.3
456
Normal
0.3
111
Normal
0.3
738
Normal
0.3
695
Tumor
0.3
224
Normal
0.3
1044
Normal
0.3
123
Tumor
0.3
864
Normal
0.2
1046
Normal
0.2
298
Normal
0.2
964
Normal
0.2
218
Normal
0.2
642
Normal
0.2
286
Normal
0.2
954
Normal
0.2
863
Tumor
0.2
862
Normal
0.2
146
Normal
0.2
464
Normal
0.2
528
Normal
0.2
546
Normal
0.2
342
Normal
0.2
641
Tumor
0.2
917
Tumor
0.2
672
Normal
0.2
956
Normal
0.2
938
Normal
0.2
922
Normal
0.2
494
Normal
0.2
368
Normal
0.2
222
Normal
0.2
114
Normal
0.2
328
Normal
0.2
482
Normal
0.2
196
Normal
0.2
921
Tumor
0.2
138
Normal
0.2
396
Normal
0.2
415
Tumor
0.2
926
Normal
0.2
554
Normal
0.2
816
Normal
0.2
1045
Tumor
0.2
284
Normal
0.2
358
Normal
0.2
352
Normal
0.2
147
Tumor
0.2
878
Normal
0.2
1041
Tumor
0.2
186
Normal
0.2
277
Tumor
0.2
391
Tumor
0.2
1026
Normal
0.2
742
Normal
0.2
686
Normal
0.2
466
Normal
0.2
1032
Normal
0.2
514
Normal
0.2
162
Normal
0.2
478
Normal
0.2
728
Normal
0.2
636
Normal
0.2
983
Tumor
0.2
666
Normal
0.2
778
Normal
0.2
386
Normal
0.2
448
Normal
0.2
492
Normal
0.2
553
Tumor
0.2
574
Normal
0.2
384
Normal
0.2
195
Tumor
0.2
272
Normal
0.2
1016
Normal
0.2
534
Normal
0.2
136
Normal
0.2
445
Tumor
0.2
866
Normal
0.2
977
Tumor
0.2
376
Normal
0.2
132
Normal
0.2
662
Normal
0.2
965
Tumor
0.2
363
Tumor
0.2
1014
Normal
0.2
568
Normal
0.2
413
Tumor
0.2
268
Normal
0.2
714
Normal
0.2
434
Normal
0.2
572
Normal
0.2
221
Tumor
0.2
1042
Normal
0.2
874
Normal
0.2
953
Tumor
0.2
311
Tumor
0.2
951
Tumor
0.2
446
Normal
0.2
517
Tumor
0.1
142
Normal
0.1
976
Normal
0.1
462
Normal
0.1
538
Normal
0.1
1022
Normal
0.1
435
Tumor
0.1
228
Normal
0.1
648
Normal
0.1
468
Normal
0.1
937
Tumor
0.1
364
Normal
0.1
412
Normal
0.1
432
Normal
0.1
388
Normal
0.1
912
Normal
0.1
852
Normal
0.1
943
Tumor
0.1
882
Normal
0.1
212
Normal
0.1
558
Normal
0.1
756
Normal
0.1
231
Tumor
0.1
383
Tumor
0.1
564
Normal
0.1
392
Normal
0.1
353
Tumor
0.1
188
Normal
0.1
366
Normal
0.1
982
Normal
0.1
1031
Tumor
0.1
314
Normal
0.1
721
Tumor
0.1
126
Normal
0.1
343
Tumor
0.1
858
Normal
0.1
628
Normal
0.1
722
Normal
0.1
916
Normal
0.1
394
Normal
0.1
477
Tumor
0.1
262
Normal
0.1
474
Normal
0.1
428
Normal
0.1
148
Normal
0.1
716
Normal
0.1
1028
Normal
0.1
526
Normal
0.1
786
Normal
0.1
257
Tumor
0.1
436
Normal
0.1
664
Normal
0.1
563
Tumor
0.1
881
Tumor
0.1
424
Normal
0.1
957
Tumor
0.1
913
Tumor
0.1
487
Tumor
0.1
978
Normal
0.1
698
Normal
0.1
1025
Tumor
0.1
467
Tumor
0.1
213
Tumor
0.1
271
Tumor
0.1
823
Tumor
0.1
422
Normal
0.1
472
Normal
0.1
283
Tumor
0.1
618
Normal
0.0
451
Tumor
0.0
416
Normal
0.0
865
Tumor
0.0
525
Tumor
0.0
427
Tumor
0.0
355
Tumor
0.0
128
Normal
0.0
914
Normal
0.0
387
Tumor
0.0
745
Tumor
0.0
261
Tumor
0.0
741
Tumor
0.0
923
Tumor
0.0
746
Normal
0.0
817
Tumor
0.0
414
Normal
0.0
258
Normal
0.0
421
Tumor
0.0
411
Tumor
0.0
185
Tumor
0.0
385
Tumor
0.0
285
Tumor
0.0
814
Normal
0.0
433
Tumor
0.0
861
Tumor
0.0
955
Tumor
0.0
813
Tumor
0.0
357
Tumor
0.0
966
Normal
0.0
362
Normal
0.0
727
Tumor
0.0
491
Tumor
0.0
824
Normal
0.0
463
Tumor
0.0
375
Tumor
0.0
217
Tumor
0.0
513
Tumor
0.0
975
Tumor
0.0
617
Tumor
0.0
715
Tumor
0.0
465
Tumor
0.0
297
Tumor
0.0
785
Tumor
0.0
393
Tumor
0.0
361
Tumor
0.0
481
Tumor
0.0
211
Tumor
-0.1
616
Normal
-0.1
113
Tumor
-0.1
868
Normal
-0.1
331
Tumor
-0.1
171
Tumor
-0.1
743
Tumor
-0.1
191
Tumor
-0.1
327
Tumor
-0.1
647
Tumor
-0.1
461
Tumor
-0.1
426
Normal
-0.1
724
Normal
-0.1
471
Tumor
-0.1
313
Tumor
-0.1
515
Tumor
-0.1
925
Tumor
-0.1
911
Tumor
-0.1
815
Tumor
-0.1
135
Tumor
-0.1
483
Tumor
-0.1
1013
Tumor
-0.1
963
Tumor
-0.1
172
Normal
-0.1
713
Tumor
-0.1
915
Tumor
-0.1
851
Tumor
-0.1
777
Tumor
-0.1
447
Tumor
-0.1
127
Tumor
-0.1
671
Tumor
-0.1
137
Tumor
-0.1
267
Tumor
-0.1
545
Tumor
-0.1
443
Tumor
-0.1
423
Tumor
-0.1
867
Tumor
-0.1
557
Tumor
-0.1
627
Tumor
-0.1
365
Tumor
-0.1
877
Tumor
-0.1
573
Tumor
-0.1
141
Tumor
-0.2
227
Tumor
-0.2
341
Tumor
-0.2
665
Tumor
-0.2
661
Tumor
-0.2
455
Tumor
-0.2
1015
Tumor
-0.2
615
Tumor
-0.2
395
Tumor
-0.2
663
Tumor
-0.2
367
Tumor
-0.2
145
Tumor
-0.2
1027
Tumor
-0.2
873
Tumor
-0.3
535
Tumor
-0.3
527
Tumor
-0.3
425
Tumor
-0.3
755
Tumor
-0.3
537
Tumor
-0.3
533
Tumor
-0.3
697
Tumor
-0.3
497
Tumor
-0.3
685
Tumor
-0.4
1021
Tumor
-0.4
187
Tumor
-0.4
493
Tumor
-0.4
223
Tumor
-0.4
884
Normal
-0.4
571
Tumor
-0.4
967
Tumor
-0.5
1043
Tumor
-0.5
883
Tumor
-0.5
635
Tumor
-0.7
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
