MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.0 nTPM
HPA Brain:16.2 nTPM
GTEx:8.0 nTPM
FANTOM5:9.2 Scaled Tags Per Million
Pig:5.8 nTPM
Mouse:11.9 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 16.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 8.4
2586 Male, age 75, left hemisphere 20.8
2666 Male, age 74, left hemisphere 9.9
1833 Male, age 53, unknown 8.8
1870 Female, age 42, unknown 7.7
2828 Female, age 72, unknown 7.7
2019 Male, age 18, unknown 7.2
1830 Male, age 51, unknown 6.6
2411 Female, age 72, unknown 5.7
1827 Male, age 72, unknown 5.3
2219 Male, age 76, both hemispheres 4.5
Dorsal raphe nucleus
nTPM: 10.4
2016 Female, age 72, unknown 12.1
2298 Female, age 72, unknown 11.6
2047 Male, age 72, unknown 11.2
1828 Male, age 53, unknown 9.5
2750 Male, age 76, both hemispheres 7.3
Inferior colliculus
nTPM: 8.9
1890 Male, age 53, unknown 11.6
1848 Female, age 42, unknown 9.8
2849 Male, age 72, unknown 8.9
2097 Female, age 72, unknown 5.4
Median raphe nucleus
nTPM: 9.4
2220 Male, age 76, midline 9.4
Periaquaductal grey, anterior
nTPM: 11.6
1795 Male, age 51, unknown 18.0
2502 Female, age 75, unknown 10.1
1947 Male, age 18, unknown 6.8
Periaquaductal grey, dorsal
nTPM: 16.2
1831 Male, age 72, unknown 29.6
2850 Male, age 76, both hemispheres 15.8
1840 Male, age 53, unknown 12.8
2464 Female, age 72, unknown 6.6
Periaquaductal grey, lateral
nTPM: 16.0
2053 Male, age 18, unknown 19.8
2272 Male, age 74, both hemispheres 14.8
2140 Male, age 76, both hemispheres 13.5
Pretectal area
nTPM: 9.6
2407 Male, age 75, both hemispheres 24.7
2825 Male, age 18, unknown 12.0
2273 Male, age 74, both hemispheres 11.3
2224 Female, age 72, unknown 10.5
2316 Male, age 76, right hemisphere 9.8
2667 Female, age 75, unknown 7.6
1944 Female, age 72, unknown 7.4
1815 Male, age 53, unknown 7.3
2007 Male, age 72, unknown 5.3
1817 Female, age 42, unknown 5.2
1816 Male, age 51, unknown 4.7
Red nucleus
nTPM: 8.2
2584 Male, age 75, left hemisphere 17.6
2588 Male, age 74, left hemisphere 10.2
2725 Female, age 75, unknown 9.5
1954 Female, age 42, unknown 8.3
1904 Male, age 53, unknown 8.0
2785 Male, age 18, unknown 7.4
2769 Male, age 72, unknown 6.9
1821 Female, age 72, unknown 6.6
1865 Male, age 51, unknown 6.3
2227 Male, age 72, unknown 6.1
2503 Female, age 72, unknown 5.9
2823 Male, age 76, right hemisphere 5.4
Substantia nigra
nTPM: 14.9
1916 Female, age 42, unknown 20.8
2699 Male, age 18, unknown 19.8
2583 Male, age 75, right hemisphere 18.8
2241 Male, age 72, unknown 17.3
1851 Male, age 51, unknown 16.3
2665 Male, age 74, both hemispheres 15.4
2590 Female, age 75, unknown 13.6
2409 Female, age 72, unknown 12.0
1941 Male, age 53, unknown 8.3
1889 Female, age 72, unknown 7.1
Superior colliculus
nTPM: 9.8
2664 Male, age 75, both hemispheres 22.1
1796 Male, age 53, unknown 14.2
1995 Male, age 72, unknown 9.7
2587 Male, age 74, left hemisphere 9.5
2668 Female, age 75, unknown 9.3
1913 Female, age 42, unknown 8.4
1839 Male, age 51, unknown 7.4
2087 Female, age 72, unknown 7.3
2261 Male, age 18, unknown 6.4
1895 Male, age 76, right hemisphere 3.9
Ventral tegmental area
nTPM: 14.2
1942 Male, age 51, unknown 21.4
2223 Female, age 72, unknown 16.2
1915 Female, age 42, unknown 14.8
2021 Male, age 53, unknown 13.4
2218 Male, age 76, both hemispheres 10.9
2410 Female, age 72, unknown 8.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 8.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.0
Samples: 139

Max nTPM: 23.6
Min nTPM: 1.1
Std nTPM: 3.6
Median nTPM: 7.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 23.6
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 22.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 18.5
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 17.3
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 16.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 15.0
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 14.6
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 13.7
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 13.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 12.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 12.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 9.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 9.2
FF:10158-103A5 76 years, female 9.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 5.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 4.4
Samples: 4

Max nTPM: 5.6
Min nTPM: 3.3
Sample A Female 4.5
Sample B Female 5.6
Sample C Male 3.3
Sample D Male 4.0
Midbrain
nTPM: 4.1
Samples: 4

Max nTPM: 6.6
Min nTPM: 2.8
Sample A Female 6.6
Sample B Female 4.2
Sample C Male 2.8
Sample D Male 2.9
Periaqueductal gray
nTPM: 5.8
Samples: 3

Max nTPM: 8.3
Min nTPM: 4.2
Sample B Female 4.9
Sample C Male 8.3
Sample D Male 4.2
Superior colliculi
nTPM: 5.7
Samples: 4

Max nTPM: 7.7
Min nTPM: 3.2
Sample A Female 4.6
Sample B Female 7.2
Sample C Male 3.2
Sample D Male 7.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 11.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 11.9
Samples: 4

Max nTPM: 12.7
Min nTPM: 11.0
Sample A Male 11.7
Sample B Male 11.0
Sample C Female 12.7
Sample D Female 12.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
69837498 Antisense, RP_050217_02_B06, Mouse strain C57BL/6J (56 days, male) 0.2
71920515 Antisense, RP_051017_02_G08, Mouse strain C57BL/6J (56 days, male) 0.2

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