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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SH3BP5 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
74.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
40.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
35.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
28.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
26.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
26.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
21.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
21.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
21.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
20.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
20.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
20.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
18.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
18.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
17.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
17.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
17.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
17.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
17.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
16.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
16.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
16.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
15.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
15.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
15.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
15.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
14.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
14.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
14.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
14.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
14.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
13.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
13.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
13.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
13.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
13.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
13.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
13.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
12.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
12.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
12.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
12.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
12.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
12.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
12.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
12.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
11.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
11.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
11.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
11.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
11.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
11.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
11.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
11.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
11.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
11.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
10.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
10.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
10.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
10.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
10.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
10.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
10.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
10.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
10.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
10.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
10.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
10.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
9.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
9.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
9.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
9.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
9.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
8.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
8.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
8.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
8.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
8.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
8.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
8.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
8.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
8.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
8.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
7.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
7.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
7.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
7.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
7.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
7.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
7.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
7.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
7.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
6.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
6.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
6.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
6.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
6.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
6.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
6.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
6.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
6.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
6.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
6.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
5.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
5.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
5.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
5.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
5.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
5.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
5.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
5.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
5.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
5.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
4.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
4.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
4.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
4.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
4.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
4.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
4.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
4.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
4.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
3.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
3.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
3.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
3.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
3.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
3.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
3.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
3.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
3.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
3.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
3.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
3.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
3.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
3.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
3.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
3.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
3.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
3.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
2.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
2.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
2.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
2.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
2.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
2.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
2.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
1.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
1.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
1.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SH3BP5 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.4
Number of samples
231
Samples
Sample
Description
TPM
DO23523
0 years, male, NA, stage:3, alive, 1080 days
131.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
86.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
51.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
46.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
40.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
39.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
36.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
35.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
33.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
32.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
31.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
31.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
28.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
28.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
28.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
27.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
26.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
26.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
26.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
26.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
24.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
24.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
24.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
24.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
23.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
23.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
22.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
22.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
22.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
21.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
21.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
20.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
20.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
20.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
20.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
19.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
19.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
19.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
19.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
19.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
19.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
18.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
18.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
18.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
18.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
18.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
17.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
17.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
17.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
17.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
17.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
17.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
17.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
17.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
17.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
17.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
17.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
17.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
16.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
16.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
16.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
16.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
16.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
15.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
15.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
15.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
15.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
15.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
15.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
15.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
15.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
15.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
14.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
14.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
14.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
14.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
14.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
14.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
14.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
14.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
14.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
14.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
14.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
14.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
14.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
14.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
13.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
13.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
13.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
13.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
13.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
13.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
13.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
13.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
13.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
13.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
13.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
13.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
12.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
12.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
12.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
12.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
12.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
12.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
12.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
12.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
12.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
12.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
12.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
12.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
12.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
12.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
11.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
11.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
11.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
11.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
11.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
10.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
10.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
10.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
10.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
10.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
10.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
10.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
10.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
10.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
10.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
10.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
10.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
10.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
10.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
9.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
9.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
9.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
9.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
9.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
9.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
8.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
8.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
8.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
8.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
8.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
7.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
7.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
7.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
6.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
6.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
6.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
6.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
6.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
6.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
6.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
6.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
6.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
6.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
5.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
4.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
4.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
4.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
4.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
3.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
3.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
2.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
572
Normal
1.2
478
Normal
0.9
1041
Tumor
0.8
491
Tumor
0.7
514
Normal
0.6
536
Normal
0.6
498
Normal
0.6
915
Tumor
0.6
697
Tumor
0.6
567
Tumor
0.5
573
Tumor
0.5
332
Normal
0.5
524
Normal
0.5
743
Tumor
0.5
444
Normal
0.5
963
Tumor
0.5
343
Tumor
0.5
211
Tumor
0.5
958
Normal
0.5
943
Tumor
0.4
563
Tumor
0.4
488
Normal
0.4
483
Tumor
0.4
314
Normal
0.4
951
Tumor
0.4
285
Tumor
0.4
131
Tumor
0.4
741
Tumor
0.4
523
Tumor
0.4
724
Normal
0.4
516
Normal
0.4
558
Normal
0.4
745
Tumor
0.4
785
Tumor
0.4
135
Tumor
0.4
957
Tumor
0.4
916
Normal
0.4
364
Normal
0.4
525
Tumor
0.4
917
Tumor
0.4
513
Tumor
0.4
467
Tumor
0.4
557
Tumor
0.4
356
Normal
0.4
224
Normal
0.4
866
Normal
0.3
661
Tumor
0.3
965
Tumor
0.3
851
Tumor
0.3
354
Normal
0.3
223
Tumor
0.3
515
Tumor
0.3
484
Normal
0.3
1046
Normal
0.3
448
Normal
0.3
744
Normal
0.3
568
Normal
0.3
786
Normal
0.3
918
Normal
0.3
813
Tumor
0.3
278
Normal
0.3
984
Normal
0.3
954
Normal
0.3
268
Normal
0.3
328
Normal
0.3
925
Tumor
0.3
926
Normal
0.3
427
Tumor
0.3
463
Tumor
0.3
312
Normal
0.3
953
Tumor
0.3
564
Normal
0.3
528
Normal
0.2
955
Tumor
0.2
494
Normal
0.2
952
Normal
0.2
863
Tumor
0.2
451
Tumor
0.2
861
Tumor
0.2
492
Normal
0.2
218
Normal
0.2
672
Normal
0.2
455
Tumor
0.2
1015
Tumor
0.2
145
Tumor
0.2
1014
Normal
0.2
474
Normal
0.2
727
Tumor
0.2
446
Normal
0.2
976
Normal
0.2
911
Tumor
0.2
482
Normal
0.2
978
Normal
0.2
526
Normal
0.2
816
Normal
0.2
824
Normal
0.2
755
Tumor
0.2
137
Tumor
0.2
311
Tumor
0.2
341
Tumor
0.2
868
Normal
0.2
938
Normal
0.2
212
Normal
0.2
778
Normal
0.2
422
Normal
0.2
424
Normal
0.2
387
Tumor
0.2
414
Normal
0.2
975
Tumor
0.2
922
Normal
0.2
472
Normal
0.2
571
Tumor
0.2
416
Normal
0.2
964
Normal
0.2
445
Tumor
0.2
574
Normal
0.2
192
Normal
0.2
756
Normal
0.2
477
Tumor
0.2
434
Normal
0.1
195
Tumor
0.1
213
Tumor
0.1
968
Normal
0.1
257
Tumor
0.1
534
Normal
0.1
1032
Normal
0.1
352
Normal
0.1
1026
Normal
0.1
461
Tumor
0.1
283
Tumor
0.1
777
Tumor
0.1
857
Tumor
0.1
214
Normal
0.1
864
Normal
0.1
141
Tumor
0.1
814
Normal
0.1
272
Normal
0.1
468
Normal
0.1
535
Tumor
0.1
222
Normal
0.1
1016
Normal
0.1
342
Normal
0.1
432
Normal
0.1
1044
Normal
0.1
924
Normal
0.1
546
Normal
0.1
462
Normal
0.1
852
Normal
0.1
127
Tumor
0.1
956
Normal
0.1
231
Tumor
0.1
823
Tumor
0.1
391
Tumor
0.1
261
Tumor
0.1
817
Tumor
0.1
944
Normal
0.1
433
Tumor
0.1
464
Normal
0.1
873
Tumor
0.1
388
Normal
0.1
981
Tumor
0.1
982
Normal
0.1
396
Normal
0.1
877
Tumor
0.1
363
Tumor
0.1
386
Normal
0.1
412
Normal
0.1
436
Normal
0.1
428
Normal
0.1
262
Normal
0.0
196
Normal
0.0
1028
Normal
0.0
128
Normal
0.0
227
Tumor
0.0
923
Tumor
0.0
937
Tumor
0.0
298
Normal
0.0
466
Normal
0.0
395
Tumor
0.0
456
Normal
0.0
663
Tumor
0.0
878
Normal
0.0
1022
Normal
0.0
818
Normal
0.0
664
Normal
0.0
662
Normal
0.0
385
Tumor
0.0
1027
Tumor
0.0
862
Normal
0.0
394
Normal
0.0
874
Normal
0.0
914
Normal
0.0
217
Tumor
0.0
858
Normal
0.0
392
Normal
0.0
648
Normal
0.0
867
Tumor
0.0
232
Normal
0.0
666
Normal
0.0
966
Normal
0.0
126
Normal
0.0
421
Tumor
0.0
487
Tumor
0.0
665
Tumor
0.0
191
Tumor
0.0
671
Tumor
0.0
912
Normal
0.0
493
Tumor
0.0
258
Normal
0.0
228
Normal
0.0
1021
Tumor
0.0
481
Tumor
0.0
113
Tumor
0.0
518
Normal
-0.1
746
Normal
-0.1
142
Normal
-0.1
737
Tumor
-0.1
124
Normal
-0.1
742
Normal
-0.1
554
Normal
-0.1
1042
Normal
-0.1
435
Tumor
-0.1
327
Tumor
-0.1
358
Normal
-0.1
967
Tumor
-0.1
284
Normal
-0.1
913
Tumor
-0.1
431
Tumor
-0.1
426
Normal
-0.1
111
Normal
-0.1
114
Normal
-0.1
452
Normal
-0.1
297
Tumor
-0.2
415
Tumor
-0.2
125
Tumor
-0.2
351
Tumor
-0.2
728
Normal
-0.2
136
Normal
-0.2
353
Tumor
-0.2
344
Normal
-0.2
267
Tumor
-0.2
921
Tumor
-0.2
538
Normal
-0.2
271
Tumor
-0.2
517
Tumor
-0.2
286
Normal
-0.2
1025
Tumor
-0.2
527
Tumor
-0.2
146
Normal
-0.2
277
Tumor
-0.2
865
Tumor
-0.2
647
Tumor
-0.2
884
Normal
-0.2
443
Tumor
-0.3
698
Normal
-0.3
882
Normal
-0.3
553
Tumor
-0.3
977
Tumor
-0.3
537
Tumor
-0.3
1045
Tumor
-0.3
423
Tumor
-0.3
413
Tumor
-0.3
533
Tumor
-0.3
473
Tumor
-0.3
123
Tumor
-0.3
1031
Tumor
-0.3
425
Tumor
-0.3
738
Normal
-0.3
465
Tumor
-0.3
331
Tumor
-0.3
723
Tumor
-0.4
313
Tumor
-0.4
883
Tumor
-0.4
815
Tumor
-0.4
1043
Tumor
-0.4
132
Normal
-0.4
112
Tumor
-0.4
881
Tumor
-0.4
497
Tumor
-0.4
138
Normal
-0.4
447
Tumor
-0.5
471
Tumor
-0.5
1013
Tumor
-0.5
983
Tumor
-0.5
221
Tumor
-0.5
545
Tumor
-0.5
393
Tumor
-0.6
357
Tumor
-0.6
355
Tumor
-0.7
411
Tumor
-0.9
361
Tumor
N/A
362
Normal
N/A
365
Tumor
N/A
366
Normal
N/A
367
Tumor
N/A
368
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
383
Tumor
N/A
384
Normal
N/A
147
Tumor
N/A
148
Normal
N/A
713
Tumor
N/A
714
Normal
N/A
715
Tumor
N/A
716
Normal
N/A
161
Tumor
N/A
162
Normal
N/A
721
Tumor
N/A
722
Normal
N/A
171
Tumor
N/A
172
Normal
N/A
615
Tumor
N/A
616
Normal
N/A
617
Tumor
N/A
618
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
635
Tumor
N/A
636
Normal
N/A
641
Tumor
N/A
642
Normal
N/A
685
Tumor
N/A
686
Normal
N/A
695
Tumor
N/A
696
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
