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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MRPS25 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
63.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
57.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
49.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
43.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
41.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
41.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
36.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
35.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
33.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
33.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
32.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
32.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
30.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
29.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
29.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
29.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
28.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
28.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
28.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
28.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
27.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
27.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
27.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
27.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
27.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
27.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
26.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
26.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
26.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
26.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
26.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
26.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
26.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
26.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
25.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
25.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
25.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
24.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
24.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
24.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
24.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
23.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
23.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
23.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
23.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
23.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
23.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
23.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
22.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
22.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
22.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
22.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
22.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
22.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
22.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
22.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
22.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
22.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
22.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
22.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
22.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
22.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
22.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
22.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
22.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
21.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
21.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
21.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
21.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
21.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
21.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
20.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
20.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
20.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
20.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
20.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
20.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
20.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
20.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
20.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
20.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
20.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
20.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
20.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
20.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
20.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
20.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
20.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
20.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
20.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
19.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
19.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
19.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
19.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
19.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
19.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
19.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
19.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
19.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
19.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
19.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
19.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
19.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
19.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
18.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
18.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
18.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
18.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
18.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
18.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
18.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
18.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
18.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
18.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
18.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
18.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
18.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
18.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
18.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
18.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
18.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
18.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
17.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
17.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
17.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
17.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
17.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
17.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
17.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
17.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
17.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
17.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
17.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
17.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
17.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
17.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
17.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
17.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
17.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
17.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
17.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
17.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
17.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
17.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
17.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
17.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
17.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
16.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
16.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
16.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
16.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
16.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
16.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
16.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
16.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
16.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
16.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
16.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
16.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
16.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
16.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
16.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
16.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
16.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
16.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
16.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
16.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
16.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
16.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
16.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
16.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
16.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
16.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
16.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
15.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
15.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
15.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
15.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
15.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
15.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
15.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
15.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
15.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
15.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
15.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
15.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
15.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
15.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
15.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
15.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
15.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
15.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
15.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
15.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
15.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
15.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
15.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
15.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
15.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
15.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
15.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
15.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
15.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
15.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
15.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
15.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
15.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
14.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
14.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
14.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
14.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
14.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
14.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
14.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
14.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
14.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
14.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
14.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
14.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
14.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
14.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
14.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
14.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
14.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
14.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
14.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
13.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
13.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
13.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
13.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
13.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
13.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
13.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
13.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
13.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
13.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
13.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
13.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
13.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
13.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
13.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
13.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
13.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
13.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
13.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
13.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
13.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
13.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
13.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
13.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
13.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
13.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
13.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
13.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
13.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
13.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
13.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
12.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
12.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
12.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
12.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
12.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
12.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
12.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
12.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
12.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
12.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
12.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
12.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
12.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
12.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
12.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
12.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
12.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
12.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
12.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
12.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
12.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
12.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
11.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
11.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
11.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
11.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
11.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
11.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
11.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
11.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
11.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
11.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
11.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
11.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
11.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
11.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
11.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
11.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
11.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
10.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
10.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
10.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
10.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
10.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
10.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
10.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
10.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
10.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
10.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
10.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
10.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
10.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
10.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
10.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
10.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
10.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
10.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
9.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
9.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
9.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
9.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
9.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
8.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
8.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
8.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
7.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
7.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MRPS25 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.0
Number of samples
231
Samples
Sample
Description
TPM
DO45127
0 years, male, NA, stage:3, dead, 420 days
42.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
35.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
35.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
34.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
34.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
31.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
30.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
30.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
29.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
29.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
28.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
28.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
26.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
25.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
25.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
25.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
24.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
24.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
24.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
23.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
22.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
22.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
22.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
22.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
22.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
22.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
22.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
21.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
21.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
21.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
21.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
21.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
21.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
21.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
21.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
21.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
21.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
21.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
20.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
20.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
20.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
20.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
20.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
20.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
20.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
20.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
20.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
20.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
19.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
19.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
19.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
19.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
19.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
19.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
19.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
19.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
19.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
19.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
18.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
18.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
18.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
18.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
18.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
18.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
18.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
17.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
17.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
17.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
17.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
17.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
17.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
17.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
17.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
17.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
17.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
17.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
17.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
17.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
16.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
16.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
16.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
16.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
16.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
16.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
16.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
16.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
16.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
16.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
16.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
16.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
16.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
16.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
16.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
16.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
16.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
16.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
15.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
15.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
15.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
15.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
15.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
15.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
15.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
15.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
15.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
15.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
15.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
15.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
15.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
15.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
15.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
15.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
15.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
14.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
14.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
14.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
14.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
14.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
14.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
14.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
14.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
14.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
14.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
14.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
14.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
14.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
14.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
14.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
13.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
13.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
13.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
13.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
13.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
13.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
13.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
13.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
13.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
13.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
13.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
13.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
13.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
13.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
13.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
13.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
13.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
13.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
13.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
13.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
13.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
13.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
13.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
13.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
12.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
12.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
12.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
12.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
12.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
12.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
12.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
12.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
12.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
12.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
12.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
12.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
12.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
12.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
12.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
12.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
12.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
12.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
12.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
12.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
12.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
11.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
11.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
11.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
11.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
11.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
11.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
10.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
10.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
10.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
10.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
10.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
10.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
10.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
9.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
9.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
9.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
9.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
9.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
9.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
8.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
411
Tumor
1.3
227
Tumor
1.2
231
Tumor
1.1
473
Tumor
1.1
477
Tumor
1.0
435
Tumor
0.9
423
Tumor
0.9
865
Tumor
0.8
967
Tumor
0.8
267
Tumor
0.8
537
Tumor
0.8
557
Tumor
0.7
571
Tumor
0.7
957
Tumor
0.7
1013
Tumor
0.7
713
Tumor
0.7
1041
Tumor
0.6
171
Tumor
0.6
663
Tumor
0.6
427
Tumor
0.6
413
Tumor
0.6
351
Tumor
0.6
361
Tumor
0.6
221
Tumor
0.5
483
Tumor
0.5
363
Tumor
0.5
641
Tumor
0.5
965
Tumor
0.5
123
Tumor
0.5
147
Tumor
0.5
665
Tumor
0.5
357
Tumor
0.5
915
Tumor
0.5
257
Tumor
0.5
467
Tumor
0.5
353
Tumor
0.5
553
Tumor
0.5
327
Tumor
0.4
331
Tumor
0.4
145
Tumor
0.4
525
Tumor
0.4
741
Tumor
0.4
977
Tumor
0.4
367
Tumor
0.4
883
Tumor
0.4
517
Tumor
0.4
271
Tumor
0.4
755
Tumor
0.4
533
Tumor
0.4
223
Tumor
0.4
861
Tumor
0.4
671
Tumor
0.4
535
Tumor
0.4
393
Tumor
0.4
127
Tumor
0.4
981
Tumor
0.4
911
Tumor
0.4
745
Tumor
0.3
567
Tumor
0.3
913
Tumor
0.3
697
Tumor
0.3
428
Normal
0.3
463
Tumor
0.3
695
Tumor
0.3
195
Tumor
0.3
877
Tumor
0.3
1025
Tumor
0.3
715
Tumor
0.3
132
Normal
0.3
465
Tumor
0.3
285
Tumor
0.3
162
Normal
0.3
355
Tumor
0.3
951
Tumor
0.3
422
Normal
0.2
867
Tumor
0.2
387
Tumor
0.2
436
Normal
0.2
161
Tumor
0.2
635
Tumor
0.2
191
Tumor
0.2
881
Tumor
0.2
471
Tumor
0.2
937
Tumor
0.2
258
Normal
0.2
513
Tumor
0.2
272
Normal
0.2
564
Normal
0.2
391
Tumor
0.2
743
Tumor
0.2
187
Tumor
0.2
953
Tumor
0.2
424
Normal
0.2
497
Tumor
0.2
963
Tumor
0.2
724
Normal
0.2
617
Tumor
0.2
414
Normal
0.2
727
Tumor
0.2
554
Normal
0.2
642
Normal
0.2
426
Normal
0.2
451
Tumor
0.2
136
Normal
0.2
365
Tumor
0.1
433
Tumor
0.1
1021
Tumor
0.1
112
Tumor
0.1
277
Tumor
0.1
385
Tumor
0.1
213
Tumor
0.1
647
Tumor
0.1
815
Tumor
0.1
464
Normal
0.1
574
Normal
0.1
661
Tumor
0.1
482
Normal
0.1
1031
Tumor
0.1
572
Normal
0.1
196
Normal
0.1
358
Normal
0.1
983
Tumor
0.1
923
Tumor
0.1
113
Tumor
0.1
685
Tumor
0.1
851
Tumor
0.1
232
Normal
0.1
356
Normal
0.1
873
Tumor
0.1
1043
Tumor
0.1
432
Normal
0.1
926
Normal
0.1
568
Normal
0.0
618
Normal
0.0
395
Tumor
0.0
261
Tumor
0.0
523
Tumor
0.0
138
Normal
0.0
148
Normal
0.0
278
Normal
0.0
777
Tumor
0.0
573
Tumor
0.0
615
Tumor
0.0
493
Tumor
0.0
297
Tumor
0.0
817
Tumor
0.0
114
Normal
0.0
728
Normal
0.0
866
Normal
0.0
944
Normal
0.0
188
Normal
0.0
431
Tumor
0.0
491
Tumor
0.0
481
Tumor
0.0
222
Normal
0.0
914
Normal
0.0
925
Tumor
0.0
823
Tumor
0.0
313
Tumor
0.0
466
Normal
0.0
214
Normal
0.0
388
Normal
0.0
462
Normal
0.0
528
Normal
0.0
446
Normal
0.0
126
Normal
0.0
1045
Tumor
-0.1
375
Tumor
-0.1
975
Tumor
-0.1
1046
Normal
-0.1
534
Normal
-0.1
756
Normal
-0.1
912
Normal
-0.1
722
Normal
-0.1
662
Normal
-0.1
396
Normal
-0.1
128
Normal
-0.1
526
Normal
-0.1
698
Normal
-0.1
474
Normal
-0.1
185
Tumor
-0.1
172
Normal
-0.1
664
Normal
-0.1
514
Normal
-0.1
628
Normal
-0.1
434
Normal
-0.1
648
Normal
-0.1
864
Normal
-0.1
868
Normal
-0.1
1014
Normal
-0.1
312
Normal
-0.1
447
Tumor
-0.1
738
Normal
-0.1
786
Normal
-0.1
366
Normal
-0.1
131
Tumor
-0.1
952
Normal
-0.1
341
Tumor
-0.1
284
Normal
-0.1
546
Normal
-0.1
444
Normal
-0.1
416
Normal
-0.1
874
Normal
-0.1
616
Normal
-0.1
421
Tumor
-0.1
224
Normal
-0.1
342
Normal
-0.1
858
Normal
-0.1
456
Normal
-0.1
298
Normal
-0.2
536
Normal
-0.2
666
Normal
-0.2
212
Normal
-0.2
696
Normal
-0.2
982
Normal
-0.2
516
Normal
-0.2
364
Normal
-0.2
111
Normal
-0.2
487
Tumor
-0.2
824
Normal
-0.2
314
Normal
-0.2
352
Normal
-0.2
816
Normal
-0.2
228
Normal
-0.2
268
Normal
-0.2
394
Normal
-0.2
468
Normal
-0.2
146
Normal
-0.2
978
Normal
-0.2
362
Normal
-0.2
518
Normal
-0.2
286
Normal
-0.2
956
Normal
-0.2
452
Normal
-0.2
964
Normal
-0.2
328
Normal
-0.2
778
Normal
-0.2
448
Normal
-0.2
344
Normal
-0.2
1016
Normal
-0.2
386
Normal
-0.2
918
Normal
-0.2
354
Normal
-0.2
1044
Normal
-0.2
818
Normal
-0.2
627
Tumor
-0.2
955
Tumor
-0.2
412
Normal
-0.2
392
Normal
-0.2
484
Normal
-0.2
742
Normal
-0.2
878
Normal
-0.2
217
Tumor
-0.2
558
Normal
-0.2
916
Normal
-0.2
527
Tumor
-0.2
714
Normal
-0.2
376
Normal
-0.3
1042
Normal
-0.3
472
Normal
-0.3
1032
Normal
-0.3
563
Tumor
-0.3
922
Normal
-0.3
186
Normal
-0.3
1015
Tumor
-0.3
262
Normal
-0.3
141
Tumor
-0.3
368
Normal
-0.3
1022
Normal
-0.3
857
Tumor
-0.3
723
Tumor
-0.3
343
Tumor
-0.3
124
Normal
-0.3
938
Normal
-0.3
332
Normal
-0.3
142
Normal
-0.3
785
Tumor
-0.3
1028
Normal
-0.3
746
Normal
-0.3
135
Tumor
-0.3
125
Tumor
-0.3
415
Tumor
-0.3
882
Normal
-0.3
137
Tumor
-0.3
192
Normal
-0.3
862
Normal
-0.3
383
Tumor
-0.3
954
Normal
-0.3
1026
Normal
-0.3
211
Tumor
-0.4
721
Tumor
-0.4
636
Normal
-0.4
976
Normal
-0.4
672
Normal
-0.4
445
Tumor
-0.4
958
Normal
-0.4
461
Tumor
-0.4
716
Normal
-0.4
814
Normal
-0.4
686
Normal
-0.4
538
Normal
-0.4
218
Normal
-0.4
425
Tumor
-0.4
283
Tumor
-0.4
984
Normal
-0.4
924
Normal
-0.4
921
Tumor
-0.4
1027
Tumor
-0.4
884
Normal
-0.4
494
Normal
-0.4
384
Normal
-0.4
478
Normal
-0.5
515
Tumor
-0.5
443
Tumor
-0.5
968
Normal
-0.5
311
Tumor
-0.5
966
Normal
-0.5
524
Normal
-0.5
852
Normal
-0.5
737
Tumor
-0.6
813
Tumor
-0.6
863
Tumor
-0.6
498
Normal
-0.6
545
Tumor
-0.6
455
Tumor
-0.6
488
Normal
-0.6
943
Tumor
-0.7
917
Tumor
-0.7
492
Normal
-0.7
744
Normal
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
