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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IDO1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
2.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
67.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
66.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
22.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
22.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
17.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
15.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
15.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
15.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
12.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
11.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
11.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
11.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
10.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
9.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
6.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
5.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
5.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
5.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
5.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
4.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
4.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
4.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
3.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
3.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
3.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
3.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
3.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
2.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
2.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
2.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
2.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
2.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
2.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
2.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
2.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
2.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
2.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
2.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
2.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
2.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
2.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
2.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
2.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
2.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
2.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
2.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
2.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
1.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
1.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
1.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
1.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
1.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
1.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
1.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
1.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
1.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
1.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
1.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
1.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
1.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
1.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
1.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
1.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
1.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
1.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
1.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
1.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
1.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
1.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
1.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
1.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
1.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
1.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
1.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
1.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
1.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
1.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
1.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
1.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
1.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
1.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
1.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
1.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
1.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
1.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
1.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
1.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
1.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
1.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
1.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
1.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
1.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
1.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
1.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
1.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
1.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
1.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
1.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
1.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
1.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
1.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
1.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
1.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
1.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
1.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
1.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
1.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
1.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
0.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
0.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
0.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
0.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
0.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
0.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
0.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
0.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
0.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IDO1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.2
Number of samples
231
Samples
Sample
Description
TPM
DO45211
0 years, male, NA, stage:3, alive, 240 days
182.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
182.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
29.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
29.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
28.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
27.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
24.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
17.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
17.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
14.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
13.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
13.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
12.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
8.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
7.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
5.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
5.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
5.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
5.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
5.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
4.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
4.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
4.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
4.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
4.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
4.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
4.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
3.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
3.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
3.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
3.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
3.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
3.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
3.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
3.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
3.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
3.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
3.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
3.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
3.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
3.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
3.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
3.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
3.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
2.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
2.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
2.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
2.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
2.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
2.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
2.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
2.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
2.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
2.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
2.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
2.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
2.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
2.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
2.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
2.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
1.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
1.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
1.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
1.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
1.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
1.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
1.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
1.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
1.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
1.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
1.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
1.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
1.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
1.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
1.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
1.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
1.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
1.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
1.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
1.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
1.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
1.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
1.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
1.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
1.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
1.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
1.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
1.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
1.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
1.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
1.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
1.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
1.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
1.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
1.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
1.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
1.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
1.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
1.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
1.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
1.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
1.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
1.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
1.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
1.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
1.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
1.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
1.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
1.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
1.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
1.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
1.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
0.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
0.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
0.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
0.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
0.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
0.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
0.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
0.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
0.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
0.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
0.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
0.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
0.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
0.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
0.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
0.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
0.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
0.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
0.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
0.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
0.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
0.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
0.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
0.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
0.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
0.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
0.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
413
Tumor
3.2
427
Tumor
3.0
113
Tumor
3.0
423
Tumor
3.0
422
Normal
2.9
127
Tumor
2.9
211
Tumor
2.8
426
Normal
2.7
421
Tumor
2.6
414
Normal
2.5
126
Normal
2.4
428
Normal
2.2
917
Tumor
2.2
383
Tumor
2.2
111
Normal
2.1
128
Normal
2.1
146
Normal
2.1
661
Tumor
2.1
424
Normal
2.1
114
Normal
2.1
425
Tumor
2.1
471
Tumor
2.0
132
Normal
1.9
573
Tumor
1.9
435
Tumor
1.7
724
Normal
1.7
138
Normal
1.6
963
Tumor
1.6
818
Normal
1.6
432
Normal
1.6
436
Normal
1.5
125
Tumor
1.5
136
Normal
1.5
145
Tumor
1.4
685
Tumor
1.4
446
Normal
1.4
975
Tumor
1.4
721
Tumor
1.4
213
Tumor
1.4
362
Normal
1.4
966
Normal
1.4
824
Normal
1.3
112
Tumor
1.2
858
Normal
1.2
443
Tumor
1.2
434
Normal
1.2
135
Tumor
1.2
468
Normal
1.2
433
Tumor
1.2
444
Normal
1.2
466
Normal
1.1
456
Normal
1.1
571
Tumor
1.1
385
Tumor
1.1
815
Tumor
1.0
857
Tumor
1.0
142
Normal
1.0
574
Normal
0.9
431
Tumor
0.9
464
Normal
0.9
738
Normal
0.9
567
Tumor
0.9
852
Normal
0.8
465
Tumor
0.8
467
Tumor
0.8
124
Normal
0.8
137
Tumor
0.7
695
Tumor
0.7
967
Tumor
0.7
451
Tumor
0.7
365
Tumor
0.7
851
Tumor
0.7
715
Tumor
0.6
558
Normal
0.6
445
Tumor
0.6
563
Tumor
0.6
498
Normal
0.6
366
Normal
0.5
478
Normal
0.5
572
Normal
0.5
914
Normal
0.5
384
Normal
0.4
376
Normal
0.4
662
Normal
0.4
361
Tumor
0.4
191
Tumor
0.3
665
Tumor
0.3
922
Normal
0.3
367
Tumor
0.3
727
Tumor
0.3
564
Normal
0.3
916
Normal
0.3
918
Normal
0.3
455
Tumor
0.3
463
Tumor
0.3
452
Normal
0.2
388
Normal
0.2
816
Normal
0.2
494
Normal
0.2
386
Normal
0.2
672
Normal
0.2
217
Tumor
0.2
568
Normal
0.2
926
Normal
0.2
663
Tumor
0.2
664
Normal
0.1
492
Normal
0.1
686
Normal
0.1
883
Tumor
0.1
396
Normal
0.1
224
Normal
0.1
227
Tumor
0.1
648
Normal
0.1
368
Normal
0.1
728
Normal
0.1
228
Normal
0.1
391
Tumor
0.1
484
Normal
0.1
387
Tumor
0.1
741
Tumor
0.0
671
Tumor
0.0
394
Normal
0.0
461
Tumor
0.0
284
Normal
0.0
375
Tumor
0.0
487
Tumor
0.0
713
Tumor
0.0
493
Tumor
0.0
212
Normal
-0.1
666
Normal
-0.1
647
Tumor
-0.1
744
Normal
-0.1
737
Tumor
-0.1
286
Normal
-0.1
722
Normal
-0.2
141
Tumor
-0.2
392
Normal
-0.2
393
Tumor
-0.2
915
Tumor
-0.2
743
Tumor
-0.2
881
Tumor
-0.2
123
Tumor
-0.2
716
Normal
-0.2
488
Normal
-0.2
283
Tumor
-0.2
285
Tumor
-0.2
878
Normal
-0.3
491
Tumor
-0.3
214
Normal
-0.3
923
Tumor
-0.3
714
Normal
-0.3
395
Tumor
-0.3
924
Normal
-0.3
497
Tumor
-0.3
483
Tumor
-0.4
192
Normal
-0.4
968
Normal
-0.4
218
Normal
-0.4
884
Normal
-0.4
223
Tumor
-0.4
557
Tumor
-0.4
474
Normal
-0.4
221
Tumor
-0.4
723
Tumor
-0.4
976
Normal
-0.5
222
Normal
-0.5
482
Normal
-0.5
196
Normal
-0.5
696
Normal
-0.5
742
Normal
-0.5
882
Normal
-0.5
877
Tumor
-0.6
913
Tumor
-0.6
912
Normal
-0.6
911
Tumor
-0.6
925
Tumor
-0.7
462
Normal
-0.7
472
Normal
-0.8
477
Tumor
-0.8
964
Normal
-0.9
195
Tumor
-0.9
131
Tumor
-0.9
958
Normal
-1.0
481
Tumor
-1.0
965
Tumor
-1.4
817
Tumor
-1.5
823
Tumor
-1.6
957
Tumor
-1.6
921
Tumor
-1.6
473
Tumor
-2.0
351
Tumor
N/A
231
Tumor
N/A
352
Normal
N/A
232
Normal
N/A
353
Tumor
N/A
354
Normal
N/A
355
Tumor
N/A
356
Normal
N/A
357
Tumor
N/A
358
Normal
N/A
363
Tumor
N/A
364
Normal
N/A
257
Tumor
N/A
258
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
937
Tumor
N/A
938
Normal
N/A
261
Tumor
N/A
262
Normal
N/A
267
Tumor
N/A
147
Tumor
N/A
268
Normal
N/A
148
Normal
N/A
943
Tumor
N/A
944
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
271
Tumor
N/A
272
Normal
N/A
277
Tumor
N/A
1016
Normal
N/A
278
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
951
Tumor
N/A
1013
Tumor
N/A
952
Normal
N/A
953
Tumor
N/A
954
Normal
N/A
955
Tumor
N/A
956
Normal
N/A
1032
Normal
N/A
1031
Tumor
N/A
161
Tumor
N/A
162
Normal
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
1044
Normal
N/A
1043
Tumor
N/A
1042
Normal
N/A
1041
Tumor
N/A
171
Tumor
N/A
172
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
977
Tumor
N/A
615
Tumor
N/A
978
Normal
N/A
616
Normal
N/A
617
Tumor
N/A
618
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
981
Tumor
N/A
861
Tumor
N/A
982
Normal
N/A
862
Normal
N/A
983
Tumor
N/A
863
Tumor
N/A
984
Normal
N/A
1046
Normal
N/A
864
Normal
N/A
1045
Tumor
N/A
865
Tumor
N/A
745
Tumor
N/A
866
Normal
N/A
746
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
513
Tumor
N/A
755
Tumor
N/A
514
Normal
N/A
635
Tumor
N/A
756
Normal
N/A
515
Tumor
N/A
636
Normal
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
641
Tumor
N/A
642
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
527
Tumor
N/A
528
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
533
Tumor
N/A
534
Normal
N/A
535
Tumor
N/A
777
Tumor
N/A
415
Tumor
N/A
536
Normal
N/A
778
Normal
N/A
416
Normal
N/A
537
Tumor
N/A
538
Normal
N/A
785
Tumor
N/A
786
Normal
N/A
545
Tumor
N/A
546
Normal
N/A
311
Tumor
N/A
553
Tumor
N/A
312
Normal
N/A
554
Normal
N/A
313
Tumor
N/A
314
Normal
N/A
447
Tumor
N/A
327
Tumor
N/A
448
Normal
N/A
328
Normal
N/A
331
Tumor
N/A
332
Normal
N/A
697
Tumor
N/A
698
Normal
N/A
341
Tumor
N/A
342
Normal
N/A
343
Tumor
N/A
344
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
