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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GSE1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
45.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
30.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
25.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
21.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
21.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
19.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
18.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
18.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
17.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
17.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
17.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
17.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
16.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
16.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
16.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
16.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
15.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
15.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
15.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
15.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
15.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
15.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
14.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
14.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
14.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
14.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
14.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
13.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
13.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
13.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
12.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
12.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
12.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
12.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
12.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
11.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
11.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
11.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
11.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
11.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
11.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
11.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
11.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
11.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
11.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
11.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
11.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
10.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
10.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
10.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
10.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
10.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
10.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
10.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
10.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
10.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
10.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
10.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
10.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
9.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
9.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
9.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
9.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
9.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
9.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
9.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
9.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
9.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
9.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
9.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
9.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
9.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
9.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
8.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
8.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
8.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
8.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
8.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
8.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
8.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
8.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
8.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
8.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
8.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
7.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
7.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
7.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
7.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
6.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
6.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
6.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
6.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
6.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
5.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
5.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
5.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
5.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
5.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
4.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
4.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
4.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
4.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
4.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
4.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
3.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
3.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
3.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
3.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
3.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
3.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
3.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
3.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
3.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
3.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
3.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
3.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
2.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
2.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
2.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
2.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
2.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
2.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
2.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
1.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
1.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
1.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
1.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
685
Tumor
1.2
361
Tumor
1.2
213
Tumor
1.0
218
Normal
1.0
881
Tumor
1.0
221
Tumor
1.0
368
Normal
0.9
217
Tumor
0.9
713
Tumor
0.8
222
Normal
0.8
365
Tumor
0.8
913
Tumor
0.8
376
Normal
0.7
723
Tumor
0.7
366
Normal
0.7
482
Normal
0.7
721
Tumor
0.6
477
Tumor
0.6
951
Tumor
0.6
728
Normal
0.6
192
Normal
0.6
958
Normal
0.6
714
Normal
0.6
498
Normal
0.5
911
Tumor
0.5
557
Tumor
0.5
214
Normal
0.5
478
Normal
0.5
727
Tumor
0.5
191
Tumor
0.5
534
Normal
0.5
877
Tumor
0.5
392
Normal
0.5
884
Normal
0.5
938
Normal
0.5
384
Normal
0.5
524
Normal
0.5
351
Tumor
0.5
517
Tumor
0.5
528
Normal
0.5
545
Tumor
0.5
383
Tumor
0.4
388
Normal
0.4
362
Normal
0.4
472
Normal
0.4
883
Tumor
0.4
715
Tumor
0.4
742
Normal
0.4
878
Normal
0.4
741
Tumor
0.4
415
Tumor
0.4
195
Tumor
0.4
367
Tumor
0.4
497
Tumor
0.4
481
Tumor
0.4
966
Normal
0.4
427
Tumor
0.4
423
Tumor
0.4
332
Normal
0.4
355
Tumor
0.4
493
Tumor
0.4
724
Normal
0.4
474
Normal
0.4
462
Normal
0.4
743
Tumor
0.4
461
Tumor
0.4
123
Tumor
0.4
863
Tumor
0.4
487
Tumor
0.4
424
Normal
0.4
527
Tumor
0.3
358
Normal
0.3
912
Normal
0.3
536
Normal
0.3
494
Normal
0.3
394
Normal
0.3
523
Tumor
0.3
448
Normal
0.3
695
Tumor
0.3
514
Normal
0.3
114
Normal
0.3
976
Normal
0.3
698
Normal
0.3
428
Normal
0.3
471
Tumor
0.3
393
Tumor
0.3
278
Normal
0.3
882
Normal
0.3
954
Normal
0.3
666
Normal
0.3
387
Tumor
0.2
421
Tumor
0.2
357
Tumor
0.2
328
Normal
0.2
737
Tumor
0.2
391
Tumor
0.2
756
Normal
0.2
395
Tumor
0.2
386
Normal
0.2
968
Normal
0.2
492
Normal
0.2
814
Normal
0.2
516
Normal
0.2
433
Tumor
0.2
967
Tumor
0.2
862
Normal
0.2
635
Tumor
0.2
484
Normal
0.2
964
Normal
0.2
128
Normal
0.2
518
Normal
0.2
722
Normal
0.2
818
Normal
0.2
312
Normal
0.2
671
Tumor
0.2
553
Tumor
0.2
1044
Normal
0.2
298
Normal
0.2
212
Normal
0.2
813
Tumor
0.2
488
Normal
0.2
473
Tumor
0.2
824
Normal
0.2
162
Normal
0.2
286
Normal
0.2
327
Tumor
0.2
672
Normal
0.1
513
Tumor
0.1
956
Normal
0.1
1032
Normal
0.1
515
Tumor
0.1
331
Tumor
0.1
785
Tumor
0.1
412
Normal
0.1
483
Tumor
0.1
538
Normal
0.1
224
Normal
0.1
558
Normal
0.1
445
Tumor
0.1
446
Normal
0.1
364
Normal
0.1
375
Tumor
0.1
491
Tumor
0.1
914
Normal
0.1
1013
Tumor
0.1
697
Tumor
0.1
444
Normal
0.1
352
Normal
0.1
344
Normal
0.1
416
Normal
0.1
314
Normal
0.1
228
Normal
0.1
778
Normal
0.1
426
Normal
0.1
413
Tumor
0.1
353
Tumor
0.1
981
Tumor
0.1
342
Normal
0.1
447
Tumor
0.1
955
Tumor
0.1
665
Tumor
0.1
616
Normal
0.1
414
Normal
0.1
546
Normal
0.1
663
Tumor
0.1
975
Tumor
0.1
977
Tumor
0.1
1046
Normal
0.1
111
Normal
0.1
354
Normal
0.0
982
Normal
0.0
283
Tumor
0.0
124
Normal
0.0
385
Tumor
0.0
963
Tumor
0.0
396
Normal
0.0
777
Tumor
0.0
126
Normal
0.0
978
Normal
0.0
1045
Tumor
0.0
537
Tumor
0.0
953
Tumor
0.0
526
Normal
0.0
816
Normal
0.0
343
Tumor
0.0
188
Normal
0.0
172
Normal
0.0
432
Normal
0.0
422
Normal
0.0
113
Tumor
0.0
196
Normal
0.0
112
Tumor
0.0
874
Normal
0.0
944
Normal
0.0
696
Normal
0.0
554
Normal
0.0
662
Normal
0.0
1014
Normal
0.0
148
Normal
0.0
686
Normal
0.0
127
Tumor
0.0
135
Tumor
0.0
425
Tumor
0.0
1042
Normal
0.0
568
Normal
0.0
716
Normal
0.0
533
Tumor
0.0
852
Normal
0.0
664
Normal
0.0
858
Normal
0.0
535
Tumor
0.0
868
Normal
0.0
436
Normal
0.0
285
Tumor
0.0
648
Normal
0.0
125
Tumor
0.0
227
Tumor
0.0
564
Normal
0.0
1016
Normal
0.0
1041
Tumor
0.0
1028
Normal
-0.1
1043
Tumor
-0.1
786
Normal
-0.1
1027
Tumor
-0.1
434
Normal
-0.1
1031
Tumor
-0.1
356
Normal
-0.1
313
Tumor
-0.1
661
Tumor
-0.1
187
Tumor
-0.1
341
Tumor
-0.1
284
Normal
-0.1
984
Normal
-0.1
857
Tumor
-0.1
443
Tumor
-0.1
211
Tumor
-0.1
943
Tumor
-0.1
186
Normal
-0.1
161
Tumor
-0.1
866
Normal
-0.1
937
Tumor
-0.1
297
Tumor
-0.1
1026
Normal
-0.1
957
Tumor
-0.1
411
Tumor
-0.1
983
Tumor
-0.1
864
Normal
-0.1
141
Tumor
-0.1
1022
Normal
-0.1
642
Normal
-0.1
431
Tumor
-0.2
647
Tumor
-0.2
572
Normal
-0.2
435
Tumor
-0.2
567
Tumor
-0.2
952
Normal
-0.2
571
Tumor
-0.2
618
Normal
-0.2
131
Tumor
-0.2
641
Tumor
-0.2
636
Normal
-0.2
627
Tumor
-0.2
171
Tumor
-0.2
873
Tumor
-0.2
746
Normal
-0.3
615
Tumor
-0.3
563
Tumor
-0.3
867
Tumor
-0.3
1021
Tumor
-0.3
617
Tumor
-0.3
574
Normal
-0.3
628
Normal
-0.3
1025
Tumor
-0.3
861
Tumor
-0.3
311
Tumor
-0.3
815
Tumor
-0.3
525
Tumor
-0.3
817
Tumor
-0.3
223
Tumor
-0.4
363
Tumor
-0.4
965
Tumor
-0.4
138
Normal
-0.4
744
Normal
-0.4
755
Tumor
-0.4
745
Tumor
-0.4
132
Normal
-0.4
136
Normal
-0.4
146
Normal
-0.4
573
Tumor
-0.4
823
Tumor
-0.4
142
Normal
-0.4
145
Tumor
-0.4
851
Tumor
-0.4
147
Tumor
-0.5
277
Tumor
-0.5
185
Tumor
-0.5
738
Normal
-0.5
1015
Tumor
-0.6
137
Tumor
-0.7
865
Tumor
-0.8
231
Tumor
N/A
232
Normal
N/A
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
257
Tumor
N/A
258
Normal
N/A
261
Tumor
N/A
262
Normal
N/A
267
Tumor
N/A
268
Normal
N/A
271
Tumor
N/A
272
Normal
N/A
451
Tumor
N/A
452
Normal
N/A
455
Tumor
N/A
456
Normal
N/A
463
Tumor
N/A
464
Normal
N/A
465
Tumor
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
