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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ZNF428 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
35.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
242.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
105.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
105.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
101.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
98.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
94.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
90.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
86.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
82.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
82.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
81.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
78.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
76.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
74.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
73.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
70.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
66.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
66.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
65.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
65.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
65.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
63.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
62.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
62.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
62.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
62.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
62.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
62.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
62.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
62.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
61.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
61.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
60.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
60.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
60.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
59.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
59.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
58.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
57.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
57.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
57.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
54.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
54.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
53.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
53.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
53.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
52.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
51.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
51.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
51.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
51.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
50.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
50.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
50.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
49.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
48.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
48.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
48.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
48.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
48.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
47.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
47.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
47.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
47.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
46.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
46.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
45.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
45.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
45.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
45.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
45.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
45.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
44.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
44.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
44.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
44.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
44.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
44.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
44.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
43.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
43.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
43.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
43.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
43.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
42.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
42.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
42.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
42.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
42.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
41.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
41.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
41.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
41.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
41.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
41.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
41.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
40.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
40.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
40.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
40.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
40.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
40.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
40.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
39.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
39.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
39.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
39.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
39.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
39.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
39.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
39.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
38.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
38.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
38.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
38.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
37.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
37.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
37.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
37.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
37.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
37.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
37.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
37.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
37.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
37.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
37.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
36.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
36.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
36.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
36.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
36.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
36.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
36.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
36.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
36.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
36.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
35.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
35.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
35.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
35.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
35.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
35.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
35.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
35.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
35.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
35.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
34.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
34.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
34.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
34.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
34.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
34.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
34.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
34.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
34.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
34.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
34.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
34.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
34.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
33.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
33.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
33.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
33.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
33.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
33.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
33.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
33.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
33.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
33.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
33.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
33.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
33.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
33.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
32.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
32.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
32.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
32.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
32.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
32.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
32.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
31.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
31.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
31.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
31.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
31.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
31.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
31.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
31.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
31.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
30.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
30.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
30.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
30.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
30.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
29.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
29.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
29.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
29.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
29.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
29.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
28.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
28.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
28.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
28.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
28.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
28.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
28.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
28.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
28.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
28.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
28.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
28.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
27.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
27.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
27.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
27.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
27.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
27.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
27.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
27.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
27.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
27.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
26.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
26.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
26.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
26.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
26.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
26.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
26.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
26.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
26.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
26.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
26.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
26.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
26.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
26.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
25.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
25.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
25.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
25.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
25.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
25.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
25.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
25.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
25.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
25.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
25.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
25.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
25.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
25.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
25.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
25.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
25.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
24.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
24.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
24.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
24.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
24.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
24.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
24.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
24.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
24.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
24.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
24.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
24.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
24.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
24.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
24.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
23.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
23.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
23.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
23.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
23.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
23.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
23.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
23.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
23.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
23.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
23.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
23.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
23.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
23.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
23.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
22.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
22.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
22.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
22.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
22.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
22.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
22.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
22.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
22.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
22.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
22.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
21.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
21.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
21.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
21.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
21.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
21.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
21.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
21.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
21.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
21.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
20.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
20.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
20.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
20.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
20.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
20.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
20.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
20.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
20.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
20.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
19.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
19.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
19.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
19.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
19.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
19.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
19.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
18.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
18.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
18.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
18.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
18.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
18.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
18.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
18.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
18.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
18.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
17.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
17.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
17.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
17.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
17.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
17.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
17.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
17.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
17.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
16.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
16.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
16.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
16.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
15.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
15.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
15.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
14.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
14.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
14.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
14.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
13.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
13.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
13.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
13.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
13.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
12.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
12.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
12.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
11.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
8.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ZNF428 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.4
Number of samples
231
Samples
Sample
Description
TPM
DO23526
0 years, male, NA, stage:3, alive, 1050 days
57.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
50.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
48.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
46.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
39.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
37.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
36.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
35.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
32.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
32.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
32.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
32.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
30.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
30.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
29.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
29.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
28.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
28.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
27.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
27.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
27.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
26.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
26.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
26.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
25.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
25.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
25.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
25.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
25.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
25.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
24.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
24.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
24.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
24.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
23.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
23.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
23.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
23.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
23.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
23.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
23.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
22.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
22.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
22.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
22.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
21.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
21.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
21.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
21.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
21.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
20.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
20.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
20.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
20.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
19.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
19.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
19.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
19.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
19.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
19.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
19.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
19.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
19.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
19.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
19.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
18.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
18.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
18.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
18.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
18.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
18.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
18.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
18.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
18.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
18.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
17.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
17.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
17.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
17.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
17.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
17.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
17.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
17.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
17.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
17.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
17.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
17.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
17.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
16.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
16.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
16.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
16.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
16.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
16.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
16.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
16.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
16.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
16.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
15.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
15.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
15.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
15.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
15.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
15.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
15.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
15.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
15.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
15.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
14.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
14.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
14.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
14.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
14.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
14.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
14.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
14.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
14.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
14.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
14.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
13.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
13.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
13.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
13.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
13.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
13.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
13.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
13.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
13.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
13.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
13.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
13.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
13.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
13.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
13.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
13.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
13.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
13.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
13.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
13.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
13.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
13.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
12.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
12.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
12.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
12.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
12.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
12.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
12.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
12.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
12.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
12.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
12.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
12.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
12.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
11.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
11.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
11.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
11.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
11.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
11.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
11.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
11.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
11.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
11.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
10.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
10.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
10.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
10.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
10.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
9.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
9.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
9.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
9.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
9.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
9.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
8.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
8.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
8.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
8.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
8.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
7.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
7.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
6.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
5.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
4.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
937
Tumor
1.3
387
Tumor
1.2
283
Tumor
1.1
463
Tumor
1.1
451
Tumor
1.1
357
Tumor
1.0
411
Tumor
1.0
737
Tumor
1.0
473
Tumor
1.0
425
Tumor
0.9
545
Tumor
0.9
393
Tumor
0.9
533
Tumor
0.9
431
Tumor
0.9
477
Tumor
0.9
1013
Tumor
0.8
355
Tumor
0.8
433
Tumor
0.8
727
Tumor
0.8
341
Tumor
0.7
443
Tumor
0.7
131
Tumor
0.7
497
Tumor
0.7
525
Tumor
0.7
285
Tumor
0.7
363
Tumor
0.7
435
Tumor
0.6
123
Tumor
0.6
297
Tumor
0.6
953
Tumor
0.6
137
Tumor
0.6
365
Tumor
0.6
1021
Tumor
0.6
161
Tumor
0.6
465
Tumor
0.6
361
Tumor
0.6
647
Tumor
0.5
865
Tumor
0.5
311
Tumor
0.5
777
Tumor
0.5
385
Tumor
0.5
217
Tumor
0.5
413
Tumor
0.5
423
Tumor
0.5
661
Tumor
0.5
745
Tumor
0.5
914
Normal
0.5
527
Tumor
0.5
785
Tumor
0.4
851
Tumor
0.4
755
Tumor
0.4
981
Tumor
0.4
965
Tumor
0.4
743
Tumor
0.4
571
Tumor
0.4
1015
Tumor
0.4
461
Tumor
0.4
195
Tumor
0.4
213
Tumor
0.4
367
Tumor
0.3
391
Tumor
0.3
353
Tumor
0.3
923
Tumor
0.3
724
Normal
0.3
861
Tumor
0.3
617
Tumor
0.3
145
Tumor
0.3
231
Tumor
0.3
721
Tumor
0.3
492
Normal
0.3
125
Tumor
0.3
483
Tumor
0.3
627
Tumor
0.3
983
Tumor
0.2
515
Tumor
0.2
517
Tumor
0.2
415
Tumor
0.2
185
Tumor
0.2
484
Normal
0.2
671
Tumor
0.2
493
Tumor
0.2
471
Tumor
0.2
416
Normal
0.2
943
Tumor
0.2
951
Tumor
0.2
883
Tumor
0.2
223
Tumor
0.2
921
Tumor
0.2
746
Normal
0.2
957
Tumor
0.2
955
Tumor
0.2
455
Tumor
0.2
874
Normal
0.2
267
Tumor
0.2
211
Tumor
0.2
421
Tumor
0.2
925
Tumor
0.2
351
Tumor
0.2
313
Tumor
0.2
141
Tumor
0.2
343
Tumor
0.2
481
Tumor
0.2
881
Tumor
0.1
488
Normal
0.1
913
Tumor
0.1
132
Normal
0.1
426
Normal
0.1
375
Tumor
0.1
573
Tumor
0.1
277
Tumor
0.1
697
Tumor
0.1
728
Normal
0.1
1025
Tumor
0.1
523
Tumor
0.1
327
Tumor
0.1
563
Tumor
0.1
738
Normal
0.1
664
Normal
0.1
171
Tumor
0.1
554
Normal
0.1
635
Tumor
0.1
867
Tumor
0.1
127
Tumor
0.1
113
Tumor
0.1
1031
Tumor
0.1
422
Normal
0.1
977
Tumor
0.1
741
Tumor
0.1
444
Normal
0.1
567
Tumor
0.1
474
Normal
0.1
823
Tumor
0.1
487
Tumor
0.1
648
Normal
0.1
952
Normal
0.1
665
Tumor
0.1
911
Tumor
0.1
383
Tumor
0.1
395
Tumor
0.0
434
Normal
0.0
221
Tumor
0.0
715
Tumor
0.0
147
Tumor
0.0
331
Tumor
0.0
615
Tumor
0.0
424
Normal
0.0
663
Tumor
0.0
436
Normal
0.0
662
Normal
0.0
446
Normal
0.0
482
Normal
0.0
464
Normal
0.0
445
Tumor
0.0
192
Normal
0.0
915
Tumor
0.0
873
Tumor
0.0
1028
Normal
0.0
813
Tumor
0.0
456
Normal
0.0
428
Normal
0.0
814
Normal
0.0
537
Tumor
0.0
364
Normal
0.0
112
Tumor
0.0
744
Normal
0.0
975
Tumor
0.0
427
Tumor
0.0
368
Normal
0.0
967
Tumor
0.0
228
Normal
-0.1
218
Normal
-0.1
466
Normal
-0.1
1016
Normal
-0.1
356
Normal
-0.1
518
Normal
-0.1
136
Normal
-0.1
467
Tumor
-0.1
672
Normal
-0.1
1041
Tumor
-0.1
261
Tumor
-0.1
452
Normal
-0.1
344
Normal
-0.1
146
Normal
-0.1
447
Tumor
-0.1
191
Tumor
-0.1
535
Tumor
-0.1
222
Normal
-0.1
538
Normal
-0.1
224
Normal
-0.1
642
Normal
-0.1
386
Normal
-0.1
271
Tumor
-0.1
366
Normal
-0.1
641
Tumor
-0.1
268
Normal
-0.1
432
Normal
-0.2
516
Normal
-0.2
553
Tumor
-0.2
713
Tumor
-0.2
494
Normal
-0.2
742
Normal
-0.2
352
Normal
-0.2
362
Normal
-0.2
878
Normal
-0.2
514
Normal
-0.2
618
Normal
-0.2
187
Tumor
-0.2
546
Normal
-0.2
286
Normal
-0.2
342
Normal
-0.2
262
Normal
-0.2
376
Normal
-0.2
138
Normal
-0.2
666
Normal
-0.2
358
Normal
-0.2
396
Normal
-0.2
695
Tumor
-0.2
212
Normal
-0.2
982
Normal
-0.2
272
Normal
-0.2
472
Normal
-0.2
723
Tumor
-0.2
148
Normal
-0.2
564
Normal
-0.2
284
Normal
-0.2
142
Normal
-0.2
258
Normal
-0.2
815
Tumor
-0.2
392
Normal
-0.2
526
Normal
-0.2
513
Tumor
-0.2
126
Normal
-0.2
214
Normal
-0.2
557
Tumor
-0.2
778
Normal
-0.2
414
Normal
-0.2
786
Normal
-0.3
1022
Normal
-0.3
1027
Tumor
-0.3
468
Normal
-0.3
114
Normal
-0.3
534
Normal
-0.3
1043
Tumor
-0.3
498
Normal
-0.3
227
Tumor
-0.3
257
Tumor
-0.3
528
Normal
-0.3
868
Normal
-0.3
877
Tumor
-0.3
196
Normal
-0.3
524
Normal
-0.3
312
Normal
-0.3
128
Normal
-0.3
628
Normal
-0.3
756
Normal
-0.3
462
Normal
-0.3
232
Normal
-0.3
1026
Normal
-0.3
188
Normal
-0.3
172
Normal
-0.3
278
Normal
-0.3
412
Normal
-0.3
124
Normal
-0.3
491
Tumor
-0.3
135
Tumor
-0.4
558
Normal
-0.4
866
Normal
-0.4
354
Normal
-0.4
186
Normal
-0.4
111
Normal
-0.4
864
Normal
-0.4
862
Normal
-0.4
572
Normal
-0.4
616
Normal
-0.4
162
Normal
-0.4
536
Normal
-0.4
574
Normal
-0.5
963
Tumor
-0.5
882
Normal
-0.5
817
Tumor
-0.5
568
Normal
-0.5
984
Normal
-0.5
328
Normal
-0.5
714
Normal
-0.5
478
Normal
-0.5
863
Tumor
-0.5
916
Normal
-0.5
394
Normal
-0.5
918
Normal
-0.5
1032
Normal
-0.5
716
Normal
-0.6
384
Normal
-0.6
686
Normal
-0.6
722
Normal
-0.6
1014
Normal
-0.6
857
Tumor
-0.6
388
Normal
-0.6
636
Normal
-0.6
917
Tumor
-0.6
696
Normal
-0.6
884
Normal
-0.7
685
Tumor
-0.7
314
Normal
-0.7
966
Normal
-0.7
1045
Tumor
-0.7
926
Normal
-0.7
858
Normal
-0.8
332
Normal
-0.8
816
Normal
-0.8
924
Normal
-0.8
978
Normal
-0.8
298
Normal
-0.8
922
Normal
-0.8
698
Normal
-0.9
956
Normal
-0.9
448
Normal
-1.0
976
Normal
-1.0
852
Normal
-1.0
912
Normal
-1.1
1044
Normal
-1.1
968
Normal
-1.1
938
Normal
-1.2
964
Normal
-1.2
1042
Normal
-1.2
958
Normal
-1.3
1046
Normal
-1.4
824
Normal
-1.4
818
Normal
-1.6
944
Normal
-1.7
954
Normal
-2.3
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
