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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GGT7 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
42.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
34.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
23.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
22.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
21.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
20.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
20.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
19.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
18.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
18.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
18.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
18.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
17.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
16.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
16.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
15.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
15.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
15.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
14.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
14.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
14.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
14.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
14.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
13.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
13.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
13.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
13.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
13.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
13.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
13.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
13.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
13.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
13.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
13.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
12.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
12.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
12.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
12.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
12.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
12.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
12.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
12.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
12.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
12.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
11.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
11.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
11.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
11.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
11.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
11.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
11.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
11.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
11.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
11.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
11.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
11.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
11.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
11.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
11.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
10.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
10.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
10.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
10.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
10.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
10.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
10.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
10.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
10.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
9.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
9.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
9.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
9.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
9.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
9.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
9.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
9.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
8.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
8.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
8.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
8.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
8.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
8.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
8.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
8.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
8.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
8.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
8.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
8.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
8.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
8.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
8.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
8.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
8.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
8.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
7.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
7.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
7.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
7.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
7.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
7.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
7.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
7.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
7.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
6.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
6.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
6.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
6.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
6.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
6.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
6.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
6.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
5.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
5.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
5.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
5.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
5.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
5.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
5.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
5.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
5.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
4.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
4.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
4.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
4.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
4.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
4.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
4.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
4.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
4.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
3.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
3.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
3.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
3.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
3.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
3.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
3.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
2.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
2.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
2.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
2.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
1.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
1.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
1.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
1.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GGT7 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.8
Number of samples
231
Samples
Sample
Description
TPM
DO45289
0 years, female, NA, stage:3, alive, 360 days
33.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
27.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
25.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
23.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
21.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
21.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
21.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
20.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
20.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
20.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
20.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
19.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
19.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
19.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
18.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
18.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
18.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
17.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
17.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
17.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
16.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
16.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
16.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
15.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
15.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
14.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
14.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
14.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
14.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
14.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
13.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
13.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
13.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
13.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
13.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
13.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
12.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
12.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
12.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
12.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
12.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
12.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
12.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
12.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
11.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
11.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
11.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
11.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
11.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
11.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
11.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
11.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
10.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
10.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
10.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
10.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
10.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
10.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
10.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
10.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
10.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
10.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
9.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
9.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
9.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
9.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
9.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
9.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
9.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
9.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
8.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
8.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
8.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
8.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
7.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
7.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
7.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
7.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
7.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
7.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
7.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
7.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
7.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
7.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
6.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
6.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
6.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
6.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
6.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
6.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
6.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
6.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
6.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
6.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
5.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
5.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
5.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
5.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
5.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
5.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
5.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
5.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
5.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
5.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
5.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
5.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
5.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
5.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
4.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
4.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
4.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
4.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
4.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
4.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
4.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
4.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
4.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
4.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
4.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
4.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
4.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
4.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
4.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
4.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
4.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
3.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
3.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
3.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
3.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
3.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
3.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
3.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
3.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
3.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
3.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
2.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
2.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
2.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
1.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
1.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
1.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
727
Tumor
1.3
435
Tumor
1.1
445
Tumor
1.1
465
Tumor
0.9
477
Tumor
0.8
367
Tumor
0.8
571
Tumor
0.7
112
Tumor
0.6
357
Tumor
0.6
313
Tumor
0.5
351
Tumor
0.5
422
Normal
0.5
695
Tumor
0.5
361
Tumor
0.5
714
Normal
0.5
882
Normal
0.5
452
Normal
0.5
354
Normal
0.4
387
Tumor
0.4
925
Tumor
0.4
137
Tumor
0.4
635
Tumor
0.4
376
Normal
0.4
342
Normal
0.4
488
Normal
0.4
257
Tumor
0.4
744
Normal
0.4
648
Normal
0.4
186
Normal
0.4
358
Normal
0.4
443
Tumor
0.4
196
Normal
0.4
428
Normal
0.4
132
Normal
0.4
414
Normal
0.3
412
Normal
0.3
755
Tumor
0.3
1014
Normal
0.3
426
Normal
0.3
423
Tumor
0.3
267
Tumor
0.3
554
Normal
0.3
462
Normal
0.3
1046
Normal
0.3
984
Normal
0.3
352
Normal
0.3
227
Tumor
0.3
162
Normal
0.3
563
Tumor
0.3
424
Normal
0.3
954
Normal
0.3
366
Normal
0.3
616
Normal
0.3
686
Normal
0.3
388
Normal
0.3
448
Normal
0.3
332
Normal
0.3
568
Normal
0.3
741
Tumor
0.3
938
Normal
0.3
572
Normal
0.3
384
Normal
0.2
564
Normal
0.2
331
Tumor
0.2
742
Normal
0.2
534
Normal
0.2
716
Normal
0.2
214
Normal
0.2
922
Normal
0.2
258
Normal
0.2
261
Tumor
0.2
546
Normal
0.2
574
Normal
0.2
127
Tumor
0.2
1016
Normal
0.2
615
Tumor
0.2
487
Tumor
0.2
672
Normal
0.2
436
Normal
0.2
666
Normal
0.2
148
Normal
0.2
723
Tumor
0.2
1044
Normal
0.2
484
Normal
0.2
298
Normal
0.2
923
Tumor
0.2
664
Normal
0.2
981
Tumor
0.2
468
Normal
0.2
416
Normal
0.2
538
Normal
0.2
212
Normal
0.2
314
Normal
0.2
142
Normal
0.2
862
Normal
0.2
114
Normal
0.2
818
Normal
0.2
482
Normal
0.2
172
Normal
0.2
982
Normal
0.2
878
Normal
0.2
128
Normal
0.2
873
Tumor
0.2
356
Normal
0.2
536
Normal
0.2
228
Normal
0.2
425
Tumor
0.2
696
Normal
0.1
494
Normal
0.1
918
Normal
0.1
232
Normal
0.1
224
Normal
0.1
883
Tumor
0.1
636
Normal
0.1
874
Normal
0.1
278
Normal
0.1
662
Normal
0.1
432
Normal
0.1
283
Tumor
0.1
456
Normal
0.1
924
Normal
0.1
363
Tumor
0.1
698
Normal
0.1
558
Normal
0.1
746
Normal
0.1
722
Normal
0.1
464
Normal
0.1
364
Normal
0.1
728
Normal
0.1
272
Normal
0.1
533
Tumor
0.1
528
Normal
0.1
466
Normal
0.1
328
Normal
0.1
738
Normal
0.1
852
Normal
0.1
222
Normal
0.1
124
Normal
0.1
618
Normal
0.1
912
Normal
0.1
955
Tumor
0.1
1027
Tumor
0.1
877
Tumor
0.1
284
Normal
0.1
526
Normal
0.1
1032
Normal
0.1
136
Normal
0.1
368
Normal
0.1
146
Normal
0.1
866
Normal
0.1
864
Normal
0.1
171
Tumor
0.1
138
Normal
0.1
344
Normal
0.1
286
Normal
0.1
392
Normal
0.1
916
Normal
0.1
1026
Normal
0.1
824
Normal
0.1
262
Normal
0.1
1022
Normal
0.1
421
Tumor
0.1
857
Tumor
0.1
721
Tumor
0.0
478
Normal
0.0
446
Normal
0.0
642
Normal
0.0
431
Tumor
0.0
815
Tumor
0.0
514
Normal
0.0
524
Normal
0.0
268
Normal
0.0
362
Normal
0.0
111
Normal
0.0
956
Normal
0.0
671
Tumor
0.0
964
Normal
0.0
737
Tumor
0.0
915
Tumor
0.0
868
Normal
0.0
394
Normal
0.0
858
Normal
0.0
135
Tumor
0.0
944
Normal
0.0
192
Normal
0.0
312
Normal
0.0
952
Normal
0.0
498
Normal
0.0
1045
Tumor
0.0
113
Tumor
0.0
472
Normal
0.0
778
Normal
0.0
161
Tumor
0.0
756
Normal
0.0
188
Normal
0.0
518
Normal
0.0
415
Tumor
0.0
185
Tumor
0.0
628
Normal
-0.1
385
Tumor
-0.1
231
Tumor
-0.1
1042
Normal
-0.1
785
Tumor
-0.1
951
Tumor
-0.1
958
Normal
-0.1
451
Tumor
-0.1
978
Normal
-0.1
535
Tumor
-0.1
863
Tumor
-0.1
921
Tumor
-0.1
474
Normal
-0.1
926
Normal
-0.1
816
Normal
-0.1
386
Normal
-0.1
341
Tumor
-0.1
365
Tumor
-0.1
218
Normal
-0.1
126
Normal
-0.1
1028
Normal
-0.1
914
Normal
-0.1
1043
Tumor
-0.1
444
Normal
-0.1
884
Normal
-0.1
463
Tumor
-0.1
976
Normal
-0.1
433
Tumor
-0.1
786
Normal
-0.1
481
Tumor
-0.1
745
Tumor
-0.2
968
Normal
-0.2
396
Normal
-0.2
665
Tumor
-0.2
413
Tumor
-0.2
513
Tumor
-0.2
492
Normal
-0.2
516
Normal
-0.2
966
Normal
-0.2
1021
Tumor
-0.2
647
Tumor
-0.2
517
Tumor
-0.2
471
Tumor
-0.2
715
Tumor
-0.2
343
Tumor
-0.2
663
Tumor
-0.2
297
Tumor
-0.3
125
Tumor
-0.3
455
Tumor
-0.3
147
Tumor
-0.3
434
Normal
-0.3
1041
Tumor
-0.3
383
Tumor
-0.3
355
Tumor
-0.3
1015
Tumor
-0.3
1025
Tumor
-0.3
271
Tumor
-0.3
497
Tumor
-0.3
187
Tumor
-0.3
777
Tumor
-0.3
393
Tumor
-0.3
123
Tumor
-0.3
697
Tumor
-0.3
813
Tumor
-0.3
743
Tumor
-0.3
145
Tumor
-0.3
975
Tumor
-0.3
963
Tumor
-0.4
943
Tumor
-0.4
867
Tumor
-0.4
221
Tumor
-0.4
553
Tumor
-0.4
567
Tumor
-0.4
823
Tumor
-0.4
391
Tumor
-0.4
957
Tumor
-0.4
977
Tumor
-0.4
447
Tumor
-0.4
1031
Tumor
-0.4
814
Normal
-0.4
911
Tumor
-0.4
353
Tumor
-0.4
917
Tumor
-0.4
483
Tumor
-0.5
141
Tumor
-0.5
861
Tumor
-0.5
467
Tumor
-0.5
411
Tumor
-0.5
217
Tumor
-0.5
913
Tumor
-0.5
527
Tumor
-0.5
1013
Tumor
-0.5
285
Tumor
-0.6
461
Tumor
-0.6
661
Tumor
-0.6
523
Tumor
-0.6
191
Tumor
-0.6
627
Tumor
-0.6
195
Tumor
-0.6
953
Tumor
-0.6
937
Tumor
-0.6
473
Tumor
-0.6
327
Tumor
-0.6
851
Tumor
-0.6
375
Tumor
-0.6
223
Tumor
-0.6
277
Tumor
-0.7
641
Tumor
-0.7
881
Tumor
-0.7
965
Tumor
-0.7
617
Tumor
-0.7
545
Tumor
-0.7
491
Tumor
-0.7
557
Tumor
-0.8
724
Normal
-0.8
311
Tumor
-0.8
427
Tumor
-0.8
131
Tumor
-0.8
967
Tumor
-0.8
573
Tumor
-0.9
537
Tumor
-0.9
817
Tumor
-0.9
525
Tumor
-0.9
213
Tumor
-0.9
685
Tumor
-0.9
983
Tumor
-0.9
493
Tumor
-1.0
211
Tumor
-1.0
713
Tumor
-1.0
395
Tumor
-1.0
515
Tumor
-1.3
865
Tumor
-1.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
