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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SYNE1 is not prognostic in Kidney Chromophobe (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.8
Number of samples
64
Samples
Sample
Description
TPM
TCGA-KM-8639-01A
0 years, male, white, stage:Stage I, alive, 953 days
30.1
TCGA-KN-8421-01A
0 years, female, white, stage:Stage II, alive, 2674 days
27.1
TCGA-KN-8427-01A
0 years, male, white, stage:Stage IV, alive, 30 days
23.2
TCGA-KM-8476-01A
0 years, male, white, stage:Stage I, alive, 3745 days
19.6
TCGA-KM-8439-01A
0 years, male, white, stage:Stage I, alive, 708 days
15.6
TCGA-KM-8441-01A
0 years, female, white, stage:Stage I, alive, 876 days
15.4
TCGA-KN-8432-01A
0 years, female, white, stage:Stage II, alive, 76 days
14.8
TCGA-KL-8343-01A
0 years, male, white, stage:Stage III, dead, 2172 days
14.1
TCGA-KL-8333-01A
0 years, male, white, stage:Stage II, alive, 2991 days
13.4
TCGA-KO-8406-01A
0 years, female, white, stage:Stage I, alive, 3145 days
13.0
TCGA-KL-8334-01A
0 years, female, white, stage:Stage III, alive, 2949 days
12.2
TCGA-KO-8404-01A
0 years, male, white, stage:Stage IV, dead, 325 days
11.6
TCGA-KO-8403-01A
0 years, male, white, stage:Stage I, alive, 3208 days
11.0
TCGA-KO-8411-01A
0 years, male, white, stage:Stage I, alive, 3958 days
10.8
TCGA-KN-8434-01A
0 years, female, white, stage:Stage II, alive, 1797 days
10.7
TCGA-KO-8410-01A
0 years, female, white, stage:Stage I, alive, 3136 days
10.2
TCGA-KN-8428-01A
0 years, male, white, stage:Stage II, dead, 1590 days
10.1
TCGA-KL-8323-01A
0 years, female, white, stage:Stage III, dead, 1158 days
10.1
TCGA-KL-8327-01A
0 years, female, white, stage:Stage I, alive, 4169 days
9.6
TCGA-KN-8433-01A
0 years, female, white, stage:Stage III, alive, 341 days
9.5
TCGA-KN-8437-01A
0 years, female, white, stage:Stage I, alive, 3068 days
9.4
TCGA-KL-8344-01A
0 years, male, white, stage:Stage III, alive, 876 days
9.3
TCGA-KL-8331-01A
0 years, female, white, stage:Stage II, alive, 3010 days
8.0
TCGA-KM-8443-01A
0 years, male, white, stage:Stage II, alive, 1520 days
8.0
TCGA-KO-8417-01A
0 years, female, white, stage:Stage I, alive, 2815 days
7.7
TCGA-KL-8329-01A
0 years, female, asian, stage:Stage I, alive, 2752 days
7.2
TCGA-KL-8341-01A
0 years, male, asian, stage:Stage IV, dead, 754 days
7.2
TCGA-KN-8424-01A
0 years, female, white, stage:Stage I, alive, 1983 days
6.8
TCGA-KO-8413-01A
0 years, male, white, stage:Stage I, alive, 3038 days
5.7
TCGA-KN-8429-01A
0 years, female, white, stage:Stage III, alive, 2650 days
5.6
TCGA-KL-8336-01A
0 years, female, white, stage:Stage IV, dead, 920 days
5.4
TCGA-KN-8436-01A
0 years, male, white, stage:Stage II, alive, 1288 days
5.3
TCGA-KM-8440-01A
0 years, male, black or african american, stage:Stage III, alive, 1366 days
4.8
TCGA-KM-8442-01A
0 years, male, stage:Stage II, alive, 1437 days
3.9
TCGA-KO-8405-01A
0 years, male, white, stage:Stage III, alive, 3056 days
3.5
TCGA-KN-8435-01A
0 years, male, white, stage:Stage II, alive, 3498 days
3.4
TCGA-KL-8328-01A
0 years, male, white, stage:Stage II, alive, 3127 days
3.1
TCGA-KO-8408-01A
0 years, male, white, stage:Stage III, dead, 507 days
3.1
TCGA-KL-8337-01A
0 years, male, black or african american, stage:Stage II, alive, 1364 days
3.0
TCGA-KO-8414-01A
0 years, female, white, stage:Stage II, alive, 3212 days
2.8
TCGA-KN-8425-01A
0 years, male, white, stage:Stage I, alive, 3179 days
2.8
TCGA-KL-8326-01A
0 years, male, white, stage:Stage III, alive, 3322 days
2.7
TCGA-KN-8419-01A
0 years, male, black or african american, stage:Stage II, alive, 714 days
2.7
TCGA-KL-8338-01A
0 years, male, white, stage:Stage III, alive, 2633 days
2.5
TCGA-KN-8423-01A
0 years, male, white, stage:Stage I, alive, 788 days
2.5
TCGA-KO-8416-01A
0 years, male, white, stage:Stage III, alive, 2752 days
2.5
TCGA-KO-8407-01A
0 years, male, white, stage:Stage II, alive, 2820 days
2.0
TCGA-KO-8415-01A
0 years, female, white, stage:Stage I, alive, 2939 days
2.0
TCGA-KL-8332-01A
0 years, male, white, stage:Stage I, alive, 2582 days
1.9
TCGA-KL-8340-01A
0 years, male, white, stage:Stage II, alive, 2024 days
1.4
TCGA-KL-8330-01A
0 years, female, black or african american, stage:Stage II, alive, 3304 days
1.3
TCGA-KL-8345-01A
0 years, male, white, stage:Stage III, alive, 1665 days
1.2
TCGA-KN-8418-01A
0 years, female, white, stage:Stage II, alive, 3935 days
1.2
TCGA-KL-8342-01A
0 years, female, white, stage:Stage II, alive, 2248 days
1.2
TCGA-KO-8409-01A
0 years, male, white, stage:Stage II, alive, 3180 days
1.2
TCGA-KL-8335-01A
0 years, male, white, stage:Stage III, alive, 2815 days
1.0
TCGA-KM-8438-01A
0 years, female, white, stage:Stage II, alive, 4622 days
1.0
TCGA-KL-8324-01A
0 years, female, white, stage:Stage II, alive, 4676 days
1.0
TCGA-KN-8431-01A
0 years, female, stage:Stage II, alive, 588 days
0.9
TCGA-KL-8346-01A
0 years, male, white, stage:Stage II, alive, 1897 days
0.9
TCGA-KL-8325-01A
0 years, female, white, stage:Stage II, dead, 725 days
0.8
TCGA-KL-8339-01A
0 years, male, white, stage:Stage IV, dead, 855 days
0.8
TCGA-KM-8477-01A
0 years, male, white, stage:Stage I, alive, 1553 days
0.6
TCGA-KN-8426-01A
0 years, male, white, stage:Stage IV, alive, 108 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SYNE1 is not prognostic in Kidney Renal Clear Cell Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.2
Number of samples
521
Samples
Sample
Description
TPM
TCGA-B2-5635-01A
0 years, male, white, stage:Stage I, alive, 755 days
65.0
TCGA-B0-5100-01A
0 years, male, black or african american, stage:Stage III, dead, 1913 days
40.3
TCGA-G6-A8L6-01A
0 years, male, black or african american, stage:Stage IV, dead, 313 days
39.6
TCGA-B8-A54D-01A
0 years, male, black or african american, stage:Stage III, alive, 830 days
38.1
TCGA-T7-A92I-01A
0 years, female, black or african american, stage:Stage I, alive, 356 days
36.4
TCGA-B2-5633-01A
0 years, male, white, stage:Stage I, alive, 963 days
35.4
TCGA-B0-5092-01A
0 years, female, white, stage:Stage IV, dead, 459 days
34.6
TCGA-DV-A4VX-01A
0 years, male, black or african american, stage:Stage IV, dead, 1626 days
34.3
TCGA-A3-3351-01A
0 years, male, white, stage:Stage II, alive, 910 days
33.1
TCGA-GK-A6C7-01A
0 years, female, black or african american, stage:Stage I, alive, 61 days
31.2
TCGA-B0-5113-01A
0 years, female, white, stage:Stage III, alive, 1175 days
30.1
TCGA-B0-5710-01A
0 years, male, white, stage:Stage I, alive, 2430 days
29.9
TCGA-CJ-4638-01A
0 years, female, white, stage:Stage IV, dead, 431 days
29.5
TCGA-B0-4847-01A
0 years, male, white, stage:Stage IV, dead, 793 days
29.5
TCGA-AK-3453-01A
0 years, female, white, stage:Stage II, alive, 2531 days
29.1
TCGA-CW-6088-01A
0 years, male, white, stage:Stage I, alive, 3222 days
28.7
TCGA-DV-5567-01A
0 years, female, black or african american, stage:Stage I, alive, 2004 days
28.6
TCGA-B0-4945-01A
0 years, female, white, stage:Stage I, dead, 2145 days
28.3
TCGA-BP-4756-01A
0 years, female, asian, stage:Stage I, alive, 374 days
27.9
TCGA-B8-5164-01A
0 years, male, white, stage:Stage III, alive, 26 days
27.6
TCGA-A3-3383-01A
0 years, male, white, stage:Stage I, alive, 861 days
27.6
TCGA-B0-5107-01A
0 years, female, white, stage:Stage IV, dead, 927 days
27.5
TCGA-BP-5200-01A
0 years, male, white, stage:Stage II, alive, 1063 days
27.4
TCGA-BP-5201-01A
0 years, male, white, stage:Stage IV, alive, 951 days
27.2
TCGA-A3-A6NI-01A
0 years, male, black or african american, stage:Stage I, alive, 1018 days
26.9
TCGA-BP-4354-01A
0 years, male, white, stage:Stage IV, dead, 1034 days
26.8
TCGA-B0-5705-01A
0 years, female, white, stage:Stage I, alive, 4537 days
26.6
TCGA-CZ-5455-01A
0 years, male, white, stage:Stage IV, dead, 561 days
26.5
TCGA-B4-5836-01A
0 years, female, white, stage:Stage I, alive, 141 days
26.4
TCGA-B0-4833-01A
0 years, female, white, stage:Stage I, dead, 2386 days
26.2
TCGA-B2-5636-01A
0 years, male, white, stage:Stage I, alive, 919 days
26.2
TCGA-CZ-5986-01A
0 years, male, white, stage:Stage I, alive, 373 days
25.6
TCGA-CJ-4869-01A
0 years, male, white, stage:Stage III, alive, 2554 days
25.6
TCGA-B0-5692-01A
0 years, female, white, stage:Stage III, alive, 3944 days
25.5
TCGA-DV-A4W0-01A
0 years, male, black or african american, stage:Stage I, alive, 2470 days
25.3
TCGA-A3-A8OW-01A
0 years, male, black or african american, stage:Stage III, alive, 323 days
25.2
TCGA-B0-4845-01A
0 years, male, white, stage:Stage IV, dead, 1986 days
24.9
TCGA-BP-5199-01A
0 years, male, white, stage:Stage II, alive, 1355 days
24.5
TCGA-B8-5553-01A
0 years, female, white, stage:Stage I, alive, 435 days
24.0
TCGA-BP-4341-01A
0 years, male, white, stage:Stage III, dead, 1589 days
24.0
TCGA-B8-A54K-01A
0 years, male, black or african american, stage:Stage I, alive, 469 days
23.9
TCGA-B2-4102-01A
0 years, male, white, stage:Stage I, alive, 952 days
23.8
TCGA-CJ-5686-01A
0 years, female, white, stage:Stage I, alive, 2038 days
23.8
TCGA-BP-4173-01A
0 years, male, white, stage:Stage II, alive, 1893 days
23.6
TCGA-B0-5701-01A
0 years, male, white, stage:Stage III, alive, 2461 days
23.5
TCGA-AK-3455-01A
0 years, female, white, stage:Stage III, dead, 683 days
23.5
TCGA-MM-A563-01A
0 years, male, black or african american, stage:'--, alive, 591 days
23.3
TCGA-BP-4177-01A
0 years, male, white, stage:Stage I, alive, 1670 days
23.3
TCGA-BP-5196-01A
0 years, male, white, stage:Stage I, alive, 1018 days
23.2
TCGA-BP-4774-01A
0 years, female, white, stage:Stage I, alive, 1885 days
23.1
TCGA-B0-4828-01A
0 years, male, white, stage:Stage IV, dead, 307 days
23.1
TCGA-B0-5691-01A
0 years, female, white, stage:Stage I, alive, 3431 days
23.1
TCGA-CW-5583-01A
0 years, female, white, stage:Stage I, alive, 2489 days
23.0
TCGA-B4-5844-01A
0 years, female, white, stage:Stage II, alive, 7 days
22.9
TCGA-B0-4819-01A
0 years, female, white, stage:Stage IV, dead, 183 days
22.8
TCGA-BP-4769-01A
0 years, male, white, stage:Stage I, alive, 1876 days
22.8
TCGA-BP-4340-01A
0 years, female, white, stage:Stage I, dead, 562 days
22.6
TCGA-CZ-5470-01A
0 years, female, stage:Stage II, alive, 386 days
22.6
TCGA-B0-4838-01A
0 years, female, white, stage:Stage I, dead, 834 days
22.3
TCGA-B8-4148-01A
0 years, female, white, stage:Stage I, alive, 1520 days
22.2
TCGA-B0-5399-01A
0 years, male, white, stage:Stage I, alive, 1411 days
22.1
TCGA-B0-5690-01A
0 years, female, white, stage:Stage I, alive, 3392 days
22.1
TCGA-B8-A7U6-01A
0 years, female, black or african american, stage:Stage I, alive, 495 days
22.1
TCGA-A3-3349-01A
0 years, female, white, stage:Stage I, alive, 1385 days
22.1
TCGA-B0-5712-01A
0 years, female, black or african american, stage:Stage IV, alive, 2722 days
21.9
TCGA-B0-5709-01A
0 years, female, white, stage:Stage III, alive, 3974 days
21.7
TCGA-A3-3324-01A
0 years, male, white, stage:Stage I, alive, 1186 days
21.6
TCGA-B0-5713-01A
0 years, female, white, stage:Stage III, alive, 2782 days
21.4
TCGA-B0-5698-01A
0 years, male, black or african american, stage:Stage I, alive, 3631 days
21.4
TCGA-B0-4718-01A
0 years, male, white, stage:Stage III, alive, 1778 days
21.3
TCGA-CJ-4641-01A
0 years, female, white, stage:Stage IV, dead, 1661 days
21.2
TCGA-DV-5566-01A
0 years, female, white, stage:Stage I, alive, 1398 days
21.1
TCGA-B0-4824-01A
0 years, female, white, stage:Stage I, dead, 1657 days
21.1
TCGA-B4-5843-01A
0 years, male, white, stage:Stage I, alive, 11 days
21.1
TCGA-B0-5711-01A
0 years, male, white, stage:Stage III, alive, 3989 days
20.9
TCGA-B0-5699-01A
0 years, male, white, stage:Stage I, alive, 3841 days
20.8
TCGA-CZ-4864-01A
0 years, male, white, stage:Stage II, dead, 1315 days
20.8
TCGA-DV-A4VZ-01A
0 years, male, black or african american, stage:Stage I, alive, 365 days
20.8
TCGA-CZ-5989-01A
0 years, male, white, stage:Stage II, alive, 1905 days
20.8
TCGA-B0-5697-01A
0 years, male, white, stage:Stage I, alive, 2630 days
20.8
TCGA-CZ-5463-01A
0 years, male, white, stage:Stage II, alive, 662 days
20.7
TCGA-BP-5186-01A
0 years, female, white, stage:Stage I, alive, 693 days
20.7
TCGA-EU-5904-01A
0 years, female, white, stage:Stage I, alive, 551 days
20.6
TCGA-DV-5573-01A
0 years, male, white, stage:Stage I, alive, 1130 days
20.6
TCGA-B0-4706-01A
0 years, male, white, stage:Stage III, dead, 65 days
20.6
TCGA-A3-3378-01A
0 years, male, white, stage:Stage I, alive, 630 days
20.5
TCGA-A3-3365-01A
0 years, male, white, stage:Stage I, alive, 873 days
20.5
TCGA-B0-4849-01A
0 years, male, white, stage:Stage III, dead, 69 days
20.5
TCGA-B0-4852-01A
0 years, female, white, stage:Stage II, dead, 1121 days
20.4
TCGA-B0-5110-01A
0 years, female, white, stage:Stage I, alive, 2009 days
20.4
TCGA-B8-A8YJ-01A
0 years, female, black or african american, stage:Stage I, alive, 431 days
20.3
TCGA-B0-4846-01A
0 years, male, white, stage:Stage IV, dead, 1200 days
20.3
TCGA-A3-3370-01A
0 years, female, white, stage:Stage I, alive, 2274 days
20.2
TCGA-CJ-5684-01A
0 years, male, white, stage:Stage III, alive, 2231 days
20.1
TCGA-B0-5099-01A
0 years, female, white, stage:Stage III, dead, 485 days
20.0
TCGA-BP-4355-01A
0 years, female, white, stage:Stage III, dead, 953 days
19.9
TCGA-A3-3331-01A
0 years, female, white, stage:Stage I, alive, 1257 days
19.8
TCGA-CJ-4894-01A
0 years, male, white, stage:Stage III, dead, 841 days
19.7
TCGA-A3-3352-01A
0 years, male, white, stage:Stage III, dead, 561 days
19.6
TCGA-BP-4795-01A
0 years, female, white, stage:Stage I, alive, 620 days
19.6
TCGA-B0-5707-01A
0 years, female, white, stage:Stage I, alive, 3744 days
19.6
TCGA-A3-A6NJ-01A
0 years, female, black or african american, stage:Stage I, alive, 468 days
19.5
TCGA-CW-6087-01A
0 years, male, white, stage:Stage IV, dead, 41 days
19.5
TCGA-CJ-4636-01A
0 years, male, white, stage:Stage III, alive, 1924 days
19.4
TCGA-CW-6097-01A
0 years, male, white, stage:Stage III, dead, 571 days
19.3
TCGA-BP-5001-01A
0 years, female, white, stage:Stage I, alive, 1177 days
19.3
TCGA-BP-4346-01A
0 years, male, white, stage:Stage III, dead, 1493 days
19.2
TCGA-DV-5576-01A
0 years, female, black or african american, stage:Stage I, dead, 727 days
19.2
TCGA-B8-A54G-01A
0 years, male, black or african american, stage:Stage I, alive, 53 days
19.0
TCGA-BP-4970-01A
0 years, male, asian, stage:Stage III, alive, 433 days
19.0
TCGA-EU-5906-01A
0 years, male, white, stage:Stage I, alive, 206 days
19.0
TCGA-CZ-5465-01A
0 years, female, stage:Stage III, dead, 2564 days
18.9
TCGA-CJ-4876-01A
0 years, male, white, stage:Stage II, alive, 1955 days
18.9
TCGA-B8-A54J-01A
0 years, male, black or african american, stage:Stage II, alive, 528 days
18.9
TCGA-B0-5120-01A
0 years, female, white, stage:Stage I, alive, 1169 days
18.8
TCGA-CZ-4862-01A
0 years, male, white, stage:Stage I, alive, 3271 days
18.6
TCGA-CJ-5682-01A
0 years, male, white, stage:Stage IV, alive, 3736 days
18.5
TCGA-BP-4776-01A
0 years, male, white, stage:Stage I, alive, 411 days
18.5
TCGA-CJ-4885-01A
0 years, male, white, stage:Stage IV, alive, 3451 days
18.4
TCGA-BP-4335-01A
0 years, female, white, stage:Stage IV, dead, 475 days
18.2
TCGA-A3-A8OV-01A
0 years, male, black or african american, stage:Stage I, alive, 340 days
18.2
TCGA-CJ-4873-01A
0 years, female, white, stage:Stage III, alive, 1776 days
18.1
TCGA-B0-4811-01A
0 years, male, white, stage:Stage III, dead, 1417 days
18.0
TCGA-B4-5378-01A
0 years, male, white, stage:Stage I, alive, 175 days
18.0
TCGA-3Z-A93Z-01A
0 years, male, black or african american, stage:Stage I, alive, 385 days
18.0
TCGA-BP-4971-01A
0 years, male, white, stage:Stage III, alive, 1487 days
18.0
TCGA-B0-4691-01A
0 years, male, white, stage:Stage IV, dead, 139 days
18.0
TCGA-B0-5085-01A
0 years, female, white, stage:Stage III, dead, 770 days
17.9
TCGA-CW-5589-01A
0 years, male, white, stage:Stage I, alive, 2378 days
17.9
TCGA-CW-5591-01A
0 years, male, white, stage:Stage IV, alive, 2271 days
17.8
TCGA-BP-4782-01A
0 years, female, white, stage:Stage I, alive, 354 days
17.8
TCGA-BP-4765-01A
0 years, male, white, stage:Stage I, alive, 2184 days
17.8
TCGA-A3-3362-01A
0 years, female, white, stage:Stage I, alive, 1559 days
17.7
TCGA-AK-3450-01A
0 years, female, white, stage:Stage I, alive, 1508 days
17.5
TCGA-BP-4982-01A
0 years, male, white, stage:Stage I, alive, 1014 days
17.5
TCGA-BP-4771-01A
0 years, male, white, stage:Stage IV, dead, 162 days
17.3
TCGA-B0-5693-01A
0 years, female, white, stage:Stage I, alive, 4074 days
17.3
TCGA-B2-A4SR-01A
0 years, male, black or african american, stage:Stage II, alive, 507 days
17.2
TCGA-B8-5546-01A
0 years, female, black or african american, stage:Stage I, alive, 505 days
17.2
TCGA-BP-4989-01A
0 years, male, white, stage:Stage III, alive, 118 days
17.1
TCGA-CJ-4643-01A
0 years, female, white, stage:Stage II, alive, 1793 days
17.0
TCGA-MM-A84U-01A
0 years, female, black or african american, stage:Stage I, alive, 700 days
17.0
TCGA-B8-A54H-01A
0 years, female, black or african american, stage:Stage II, alive, 256 days
17.0
TCGA-BP-4332-01A
0 years, male, white, stage:Stage III, alive, 1133 days
17.0
TCGA-B0-5812-01A
0 years, male, white, stage:Stage I, alive, 3834 days
17.0
TCGA-A3-3376-01A
0 years, male, black or african american, stage:Stage I, dead, 1696 days
16.9
TCGA-BP-4349-01A
0 years, female, white, stage:Stage I, alive, 372 days
16.9
TCGA-G6-A8L8-01A
0 years, female, black or african american, stage:Stage I, dead, 1091 days
16.9
TCGA-BP-5174-01A
0 years, female, white, stage:Stage I, alive, 2257 days
16.8
TCGA-BP-4163-01A
0 years, female, white, stage:Stage III, alive, 2839 days
16.7
TCGA-G6-A5PC-01A
0 years, female, black or african american, stage:Stage IV, dead, 242 days
16.7
TCGA-BP-4352-01A
0 years, female, white, stage:Stage IV, dead, 344 days
16.7
TCGA-BP-4165-01A
0 years, female, white, stage:Stage I, alive, 3037 days
16.6
TCGA-CJ-4875-01A
0 years, male, white, stage:Stage IV, dead, 3554 days
16.5
TCGA-CJ-5683-01A
0 years, male, white, stage:Stage I, alive, 1889 days
16.5
TCGA-BP-5008-01A
0 years, male, white, stage:Stage I, alive, 1071 days
16.5
TCGA-B8-5550-01A
0 years, male, white, stage:Stage III, alive, 1476 days
16.5
TCGA-A3-3359-01A
0 years, female, white, stage:Stage I, alive, 2504 days
16.5
TCGA-BP-4999-01A
0 years, male, white, stage:Stage I, alive, 1266 days
16.4
TCGA-BP-4760-01A
0 years, male, black or african american, stage:Stage I, alive, 2361 days
16.4
TCGA-BP-4991-01A
0 years, male, white, stage:Stage I, alive, 1413 days
16.4
TCGA-CJ-5678-01A
0 years, male, black or african american, stage:Stage IV, dead, 574 days
16.4
TCGA-B0-4813-01A
0 years, male, white, stage:Stage III, dead, 18 days
16.3
TCGA-BP-5183-01A
0 years, male, white, stage:Stage III, alive, 1291 days
16.3
TCGA-CW-5580-01A
0 years, female, white, stage:Stage IV, dead, 1964 days
16.3
TCGA-CJ-5672-01A
0 years, male, white, stage:Stage I, dead, 1972 days
16.2
TCGA-B0-4817-01A
0 years, male, white, stage:Stage III, dead, 1019 days
16.1
TCGA-CJ-4892-01A
0 years, female, white, stage:Stage I, alive, 1521 days
16.1
TCGA-CZ-5451-01A
0 years, male, white, stage:Stage II, alive, 1929 days
16.1
TCGA-AS-3778-01A
0 years, male, white, stage:Stage I, alive, 43 days
16.0
TCGA-B0-5695-01A
0 years, female, white, stage:Stage I, alive, 2150 days
16.0
TCGA-BP-4770-01A
0 years, female, white, stage:Stage IV, dead, 329 days
15.9
TCGA-B0-4714-01A
0 years, male, white, stage:Stage IV, dead, 99 days
15.9
TCGA-CJ-4916-01A
0 years, female, white, stage:Stage III, alive, 1373 days
15.9
TCGA-B0-5400-01A
0 years, female, white, stage:Stage III, alive, 1733 days
15.9
TCGA-MW-A4EC-01A
0 years, female, black or african american, stage:Stage I, alive, 498 days
15.9
TCGA-A3-3367-01A
0 years, male, white, stage:Stage I, alive, 2270 days
15.8
TCGA-BP-4344-01A
0 years, female, white, stage:Stage I, alive, 1666 days
15.8
TCGA-B0-4818-01A
0 years, female, white, stage:Stage II, dead, 510 days
15.7
TCGA-CJ-6030-01A
0 years, male, white, stage:Stage I, dead, 2299 days
15.7
TCGA-BP-4337-01A
0 years, female, white, stage:Stage III, dead, 2 days
15.6
TCGA-CZ-5469-01A
0 years, male, white, stage:Stage II, dead, 946 days
15.6
TCGA-B0-4701-01A
0 years, female, white, stage:Stage IV, dead, 238 days
15.6
TCGA-BP-5187-01A
0 years, male, white, stage:Stage I, alive, 406 days
15.6
TCGA-CW-5590-01A
0 years, male, white, stage:Stage IV, dead, 1075 days
15.6
TCGA-BP-5184-01A
0 years, male, white, stage:Stage I, alive, 1133 days
15.5
TCGA-AK-3445-01A
0 years, male, white, stage:Stage III, alive, 2392 days
15.5
TCGA-CJ-5680-01A
0 years, female, white, stage:Stage IV, dead, 768 days
15.5
TCGA-BP-4766-01A
0 years, female, white, stage:Stage I, alive, 1462 days
15.5
TCGA-CJ-4907-01A
0 years, male, white, stage:Stage III, alive, 1499 days
15.5
TCGA-CJ-6032-01A
0 years, female, white, stage:Stage II, alive, 3639 days
15.5
TCGA-MM-A564-01A
0 years, male, black or african american, stage:Stage II, alive, 607 days
15.4
TCGA-B8-A54F-01A
0 years, female, black or african american, stage:Stage I, alive, 519 days
15.4
TCGA-BP-4347-01A
0 years, male, white, stage:Stage III, alive, 1367 days
15.4
TCGA-BP-4981-01A
0 years, female, white, stage:Stage III, dead, 1097 days
15.4
TCGA-B4-5377-01A
0 years, female, white, stage:Stage IV, alive, 365 days
15.3
TCGA-BP-4801-01A
0 years, male, white, stage:Stage I, alive, 1124 days
15.3
TCGA-B0-4703-01A
0 years, male, white, stage:Stage IV, dead, 182 days
15.3
TCGA-CJ-4639-01A
0 years, female, white, stage:Stage II, alive, 3229 days
15.2
TCGA-BP-5168-01A
0 years, male, white, stage:Stage I, dead, 1463 days
15.2
TCGA-AK-3429-01A
0 years, female, white, stage:Stage II, alive, 3328 days
15.1
TCGA-A3-3307-01A
0 years, male, stage:Stage III, alive, 1436 days
15.1
TCGA-BP-5004-01A
0 years, male, white, stage:Stage I, alive, 1126 days
15.0
TCGA-BP-4758-01A
0 years, male, white, stage:Stage I, alive, 2208 days
15.0
TCGA-BP-4158-01A
0 years, male, white, stage:Stage I, alive, 3377 days
15.0
TCGA-BP-4804-01A
0 years, male, white, stage:Stage I, alive, 1459 days
15.0
TCGA-CW-6090-01A
0 years, male, white, stage:Stage I, alive, 2552 days
15.0
TCGA-CZ-5454-01A
0 years, male, white, stage:Stage IV, dead, 722 days
15.0
TCGA-AK-3461-01A
0 years, male, white, stage:Stage I, alive, 2217 days
14.9
TCGA-B4-5838-01A
0 years, male, white, stage:'--, alive, 166 days
14.9
TCGA-B2-4101-01A
0 years, male, white, stage:Stage II, alive, 648 days
14.9
TCGA-CJ-5677-01A
0 years, female, white, stage:Stage IV, dead, 782 days
14.9
TCGA-DV-5575-01A
0 years, female, white, stage:Stage I, alive, 1729 days
14.8
TCGA-B0-5106-01A
0 years, male, white, stage:Stage I, dead, 1598 days
14.8
TCGA-A3-A6NL-01A
0 years, female, black or african american, stage:Stage I, alive, 689 days
14.8
TCGA-BP-4351-01A
0 years, female, white, stage:Stage III, alive, 970 days
14.8
TCGA-DV-5565-01A
0 years, male, white, stage:Stage I, alive, 1329 days
14.8
TCGA-BP-5194-01A
0 years, male, white, stage:Stage I, alive, 408 days
14.8
TCGA-CJ-4899-01A
0 years, male, asian, stage:Stage I, alive, 1528 days
14.8
TCGA-B0-4822-01A
0 years, male, white, stage:Stage II, dead, 1111 days
14.7
TCGA-A3-A6NN-01A
0 years, male, black or african american, stage:Stage I, alive, 3 days
14.6
TCGA-CJ-4904-01A
0 years, female, white, stage:Stage IV, alive, 3302 days
14.6
TCGA-CZ-5985-01A
0 years, male, white, stage:Stage II, alive, 1997 days
14.6
TCGA-B0-4842-01A
0 years, female, white, stage:Stage III, dead, 1724 days
14.6
TCGA-B0-4710-01A
0 years, female, white, stage:Stage III, alive, 1755 days
14.6
TCGA-B4-5834-01A
0 years, male, white, stage:Stage I, alive, 38 days
14.5
TCGA-CJ-4868-01A
0 years, male, white, stage:Stage IV, dead, 646 days
14.5
TCGA-B0-4821-01A
0 years, female, asian, stage:Stage III, dead, 1230 days
14.5
TCGA-BP-5190-01A
0 years, male, white, stage:Stage I, alive, 1011 days
14.5
TCGA-CZ-4863-01A
0 years, female, white, stage:Stage III, alive, 1928 days
14.4
TCGA-A3-3343-01A
0 years, male, white, stage:Stage II, alive, 945 days
14.4
TCGA-CJ-4640-01A
0 years, male, white, stage:Stage III, alive, 3480 days
14.4
TCGA-CW-5587-01A
0 years, female, white, stage:Stage III, alive, 2226 days
14.4
TCGA-B0-5075-01A
0 years, female, white, stage:Stage III, dead, 637 days
14.3
TCGA-BP-4164-01A
0 years, female, white, stage:Stage III, dead, 992 days
14.3
TCGA-A3-3380-01A
0 years, male, stage:Stage I, alive, 567 days
14.3
TCGA-CJ-5675-01A
0 years, male, white, stage:Stage II, alive, 3936 days
14.2
TCGA-B8-4622-01A
0 years, male, white, stage:Stage IV, alive, 1525 days
14.2
TCGA-A3-3387-01A
0 years, male, white, stage:Stage I, alive, 617 days
14.2
TCGA-CJ-4905-01A
0 years, female, white, stage:Stage I, alive, 1496 days
14.2
TCGA-CW-6093-01A
0 years, male, white, stage:Stage I, alive, 3146 days
14.1
TCGA-B0-5088-01A
0 years, male, white, stage:Stage I, dead, 563 days
14.1
TCGA-B0-5119-01A
0 years, female, white, stage:Stage I, alive, 1552 days
14.0
TCGA-BP-4998-01A
0 years, male, asian, stage:Stage I, alive, 932 days
14.0
TCGA-CJ-4882-01A
0 years, male, black or african american, stage:Stage III, alive, 1883 days
14.0
TCGA-BP-5177-01A
0 years, female, white, stage:Stage I, alive, 293 days
14.0
TCGA-CJ-4878-01A
0 years, female, white, stage:Stage III, alive, 2186 days
14.0
TCGA-BP-4968-01A
0 years, male, white, stage:Stage I, alive, 1746 days
14.0
TCGA-CJ-6027-01A
0 years, male, white, stage:Stage I, dead, 3615 days
13.9
TCGA-CJ-4634-01A
0 years, female, white, stage:Stage I, alive, 3498 days
13.9
TCGA-DV-5569-01A
0 years, female, white, stage:Stage I, alive, 355 days
13.9
TCGA-B0-5700-01A
0 years, male, white, stage:Stage I, alive, 1790 days
13.9
TCGA-CJ-4886-01A
0 years, female, white, stage:Stage I, alive, 1952 days
13.9
TCGA-CZ-4865-01A
0 years, female, white, stage:Stage I, dead, 166 days
13.9
TCGA-CJ-4900-01A
0 years, female, white, stage:Stage IV, dead, 1714 days
13.8
TCGA-AK-3434-01A
0 years, male, white, stage:Stage I, alive, 2087 days
13.8
TCGA-BP-5182-01A
0 years, male, white, stage:Stage I, alive, 1165 days
13.8
TCGA-BP-5006-01A
0 years, male, white, stage:Stage I, alive, 840 days
13.8
TCGA-B8-5165-01A
0 years, male, white, stage:Stage I, alive, 737 days
13.7
TCGA-BP-4992-01A
0 years, male, white, stage:Stage I, alive, 501 days
13.6
TCGA-B0-4810-01A
0 years, male, white, stage:Stage III, dead, 478 days
13.6
TCGA-BP-4974-01A
0 years, male, white, stage:Stage IV, dead, 211 days
13.5
TCGA-CZ-4866-01A
0 years, female, white, stage:Stage I, alive, 3267 days
13.5
TCGA-B0-5080-01A
0 years, male, white, stage:Stage IV, dead, 342 days
13.5
TCGA-BP-4775-01A
0 years, female, white, stage:Stage I, alive, 1843 days
13.5
TCGA-B0-4713-01A
0 years, female, white, stage:Stage III, dead, 202 days
13.4
TCGA-BP-4761-01A
0 years, male, white, stage:Stage III, alive, 182 days
13.4
TCGA-CJ-6033-01A
0 years, female, white, stage:Stage IV, dead, 224 days
13.3
TCGA-BP-5189-01A
0 years, male, white, stage:Stage I, dead, 822 days
13.3
TCGA-BP-4162-01A
0 years, female, white, stage:Stage I, alive, 3074 days
13.3
TCGA-BP-4784-01A
0 years, female, white, stage:Stage I, alive, 1854 days
13.3
TCGA-BP-5192-01A
0 years, male, white, stage:Stage I, alive, 714 days
13.3
TCGA-A3-3317-01A
0 years, male, stage:Stage II, alive, 1491 days
13.2
TCGA-CZ-5458-01A
0 years, male, white, stage:Stage III, alive, 2789 days
13.2
TCGA-B2-5639-01A
0 years, male, white, stage:Stage IV, dead, 1003 days
13.2
TCGA-DV-5574-01A
0 years, male, white, stage:Stage I, alive, 2016 days
13.2
TCGA-BP-4169-01A
0 years, female, white, stage:Stage II, dead, 701 days
13.1
TCGA-BP-4790-01A
0 years, male, white, stage:Stage I, dead, 1111 days
13.0
TCGA-BP-5007-01A
0 years, male, white, stage:Stage II, alive, 1140 days
13.0
TCGA-BP-4329-01A
0 years, male, white, stage:Stage III, dead, 845 days
12.9
TCGA-BP-4161-01A
0 years, male, white, stage:Stage I, alive, 2746 days
12.9
TCGA-B8-5159-01A
0 years, female, white, stage:Stage I, alive, 722 days
12.9
TCGA-CZ-5459-01A
0 years, male, white, stage:Stage III, alive, 1683 days
12.8
TCGA-B0-4814-01A
0 years, male, white, stage:Stage IV, dead, 168 days
12.8
TCGA-CJ-4872-01A
0 years, male, white, stage:Stage I, alive, 1435 days
12.8
TCGA-A3-3320-01A
0 years, female, white, stage:Stage I, alive, 1508 days
12.8
TCGA-CJ-5676-01A
0 years, male, white, stage:Stage III, alive, 4067 days
12.7
TCGA-AK-3451-01A
0 years, male, white, stage:Stage II, alive, 2868 days
12.6
TCGA-BP-4961-01A
0 years, male, white, stage:Stage I, alive, 1935 days
12.6
TCGA-CZ-5467-01A
0 years, female, white, stage:Stage III, dead, 73 days
12.6
TCGA-B0-5121-01A
0 years, male, white, stage:Stage I, alive, 1485 days
12.6
TCGA-B0-5696-01A
0 years, male, white, stage:Stage III, alive, 2609 days
12.6
TCGA-AK-3454-01A
0 years, male, white, stage:Stage I, alive, 874 days
12.5
TCGA-CJ-4908-01A
0 years, male, white, stage:Stage I, alive, 1531 days
12.5
TCGA-B8-5545-01A
0 years, male, black or african american, stage:Stage I, alive, 1525 days
12.5
TCGA-A3-3326-01A
0 years, male, white, stage:Stage I, alive, 1137 days
12.4
TCGA-BP-4965-01A
0 years, male, white, stage:Stage I, alive, 1871 days
12.4
TCGA-B0-5094-01A
0 years, male, white, stage:Stage IV, dead, 333 days
12.4
TCGA-AK-3431-01A
0 years, female, white, stage:Stage II, dead, 2241 days
12.4
TCGA-BP-4964-01A
0 years, female, white, stage:Stage I, alive, 1862 days
12.4
TCGA-B0-4843-01A
0 years, male, white, stage:Stage III, dead, 320 days
12.4
TCGA-CJ-4889-01A
0 years, female, white, stage:Stage I, alive, 1946 days
12.4
TCGA-BP-4973-01A
0 years, male, white, stage:Stage III, alive, 1384 days
12.3
TCGA-A3-3372-01A
0 years, male, white, stage:Stage III, alive, 735 days
12.2
TCGA-BP-5202-01A
0 years, male, white, stage:Stage III, alive, 29 days
12.1
TCGA-B0-4693-01A
0 years, female, white, stage:Stage III, dead, 77 days
12.1
TCGA-B8-4151-01A
0 years, female, white, stage:Stage III, alive, 1299 days
12.1
TCGA-A3-3323-01A
0 years, male, white, stage:Stage I, alive, 1106 days
12.0
TCGA-BP-5176-01A
0 years, female, white, stage:Stage I, dead, 1590 days
12.0
TCGA-CZ-5984-01A
0 years, male, white, stage:Stage I, alive, 2067 days
12.0
TCGA-B2-5641-01A
0 years, male, white, stage:Stage I, alive, 656 days
12.0
TCGA-AK-3426-01A
0 years, male, white, stage:Stage III, dead, 885 days
12.0
TCGA-BP-5000-01A
0 years, male, white, stage:Stage I, alive, 563 days
12.0
TCGA-B0-4697-01A
0 years, female, white, stage:Stage IV, dead, 578 days
11.9
TCGA-CJ-4884-01A
0 years, female, white, stage:Stage III, alive, 1759 days
11.8
TCGA-A3-3373-01A
0 years, female, white, stage:Stage I, alive, 1621 days
11.8
TCGA-CW-5584-01A
0 years, male, white, stage:Stage III, dead, 164 days
11.8
TCGA-BP-4993-01A
0 years, male, white, stage:Stage I, alive, 177 days
11.7
TCGA-A3-3347-01A
0 years, female, white, stage:Stage III, dead, 1610 days
11.7
TCGA-6D-AA2E-01A
0 years, female, black or african american, stage:Stage I, alive, 362 days
11.6
TCGA-BP-4330-01A
0 years, female, black or african american, stage:Stage III, alive, 1888 days
11.6
TCGA-CJ-5681-01A
0 years, female, white, stage:Stage IV, dead, 552 days
11.6
TCGA-CJ-4902-01A
0 years, male, white, stage:Stage III, alive, 1520 days
11.4
TCGA-A3-3363-01A
0 years, male, asian, stage:Stage II, alive, 319 days
11.4
TCGA-AK-3456-01A
0 years, male, black or african american, stage:Stage II, alive, 1143 days
11.3
TCGA-CJ-4644-01A
0 years, female, white, stage:Stage IV, dead, 336 days
11.3
TCGA-BP-5010-01A
0 years, male, white, stage:Stage III, dead, 878 days
11.2
TCGA-CJ-4901-01A
0 years, male, white, stage:Stage III, alive, 1450 days
11.2
TCGA-BP-4353-01A
0 years, male, white, stage:Stage I, dead, 375 days
11.2
TCGA-CW-5585-01A
0 years, male, white, stage:Stage IV, alive, 2609 days
11.2
TCGA-BP-4972-01A
0 years, female, white, stage:Stage III, alive, 1502 days
11.2
TCGA-CZ-5982-01A
0 years, female, white, stage:Stage I, alive, 2439 days
11.2
TCGA-CZ-5462-01A
0 years, male, white, stage:Stage IV, dead, 311 days
11.1
TCGA-CZ-5988-01A
0 years, male, white, stage:Stage I, alive, 693 days
11.1
TCGA-B8-A54E-01A
0 years, female, black or african american, stage:Stage I, alive, 909 days
11.1
TCGA-BP-4807-01A
0 years, male, white, stage:Stage I, alive, 211 days
11.0
TCGA-CZ-5987-01A
0 years, male, white, stage:Stage IV, dead, 445 days
11.0
TCGA-BP-4159-01A
0 years, male, white, stage:Stage I, dead, 2601 days
11.0
TCGA-B0-5077-01A
0 years, male, white, stage:Stage I, dead, 1317 days
11.0
TCGA-BP-5009-01A
0 years, male, white, stage:Stage I, dead, 1092 days
10.9
TCGA-B8-5163-01A
0 years, female, white, stage:Stage III, alive, 822 days
10.7
TCGA-CJ-4893-01A
0 years, female, white, stage:Stage I, alive, 750 days
10.7
TCGA-A3-3325-01A
0 years, male, white, stage:Stage I, dead, 1170 days
10.7
TCGA-A3-3322-01A
0 years, male, white, stage:Stage I, alive, 1478 days
10.7
TCGA-B8-5551-01A
0 years, female, black or african american, stage:Stage I, alive, 16 days
10.6
TCGA-BP-4975-01A
0 years, male, white, stage:Stage I, alive, 1433 days
10.6
TCGA-A3-3357-01A
0 years, male, white, stage:Stage II, alive, 2688 days
10.6
TCGA-CZ-5461-01A
0 years, male, white, stage:Stage IV, dead, 330 days
10.6
TCGA-A3-3358-01A
0 years, female, white, stage:Stage I, alive, 1307 days
10.6
TCGA-BP-4167-01A
0 years, male, white, stage:Stage III, alive, 2718 days
10.6
TCGA-CJ-4888-01A
0 years, male, white, stage:Stage IV, dead, 1567 days
10.6
TCGA-CJ-4920-01A
0 years, female, white, stage:Stage I, dead, 139 days
10.6
TCGA-CJ-4890-01A
0 years, male, white, stage:Stage IV, alive, 3519 days
10.6
TCGA-B0-4699-01A
0 years, male, white, stage:Stage IV, dead, 110 days
10.5
TCGA-B0-5703-01A
0 years, male, white, stage:Stage I, alive, 2246 days
10.5
TCGA-CZ-5452-01A
0 years, male, white, stage:Stage II, alive, 1789 days
10.5
TCGA-CJ-4881-01A
0 years, male, white, stage:Stage III, alive, 2014 days
10.5
TCGA-CZ-5453-01A
0 years, male, white, stage:Stage II, dead, 2419 days
10.5
TCGA-BP-4331-01A
0 years, male, white, stage:Stage I, dead, 2454 days
10.5
TCGA-CZ-4857-01A
0 years, male, white, stage:Stage IV, dead, 1432 days
10.5
TCGA-AK-3458-01A
0 years, male, white, stage:Stage I, alive, 1168 days
10.4
TCGA-CJ-4874-01A
0 years, female, white, stage:Stage I, alive, 2283 days
10.3
TCGA-BP-4789-01A
0 years, male, white, stage:Stage I, alive, 1489 days
10.3
TCGA-A3-3311-01A
0 years, male, stage:Stage I, dead, 1191 days
10.2
TCGA-BP-5170-01A
0 years, male, white, stage:Stage I, alive, 2412 days
10.2
TCGA-B8-5549-01A
0 years, male, white, stage:Stage I, alive, 194 days
10.1
TCGA-A3-A8CQ-01A
0 years, female, black or african american, stage:Stage I, alive, 3 days
10.1
TCGA-B0-5095-01A
0 years, male, white, stage:Stage III, dead, 245 days
10.1
TCGA-B0-5108-01A
0 years, male, white, stage:Stage III, alive, 1782 days
10.1
TCGA-A3-3306-01A
0 years, male, white, stage:Stage I, alive, 1120 days
10.0
TCGA-BP-4986-01A
0 years, male, white, stage:Stage I, alive, 785 days
10.0
TCGA-A3-3329-01A
0 years, male, white, stage:Stage I, alive, 1624 days
10.0
TCGA-CJ-4903-01A
0 years, male, white, stage:Stage I, alive, 1560 days
10.0
TCGA-BP-4977-01A
0 years, male, white, stage:Stage I, alive, 454 days
9.9
TCGA-CZ-4853-01A
0 years, male, white, stage:Stage I, alive, 774 days
9.8
TCGA-CZ-4856-01A
0 years, female, white, stage:Stage I, alive, 18 days
9.8
TCGA-B0-4839-01A
0 years, female, white, stage:Stage I, dead, 1639 days
9.8
TCGA-BP-4798-01A
0 years, male, white, stage:'--, dead, 334 days
9.7
TCGA-DV-5568-01A
0 years, male, white, stage:Stage I, alive, 370 days
9.7
TCGA-BP-5195-01A
0 years, male, white, stage:Stage I, alive, 749 days
9.7
TCGA-BP-5181-01A
0 years, female, white, stage:Stage I, alive, 1495 days
9.6
TCGA-CJ-4637-01A
0 years, female, white, stage:Stage IV, dead, 2227 days
9.6
TCGA-CJ-4897-01A
0 years, female, white, stage:Stage III, alive, 3341 days
9.6
TCGA-AK-3460-01A
0 years, male, white, stage:Stage I, alive, 2508 days
9.5
TCGA-B0-4815-01A
0 years, male, white, stage:Stage III, dead, 1588 days
9.5
TCGA-B0-4816-01A
0 years, male, white, stage:Stage II, dead, 1371 days
9.5
TCGA-B0-5102-01A
0 years, female, white, stage:Stage I, dead, 2764 days
9.5
TCGA-BP-4985-01A
0 years, male, white, stage:Stage III, dead, 952 days
9.5
TCGA-B8-4154-01A
0 years, female, white, stage:Stage I, alive, 1380 days
9.5
TCGA-BP-4763-01A
0 years, female, white, stage:Stage I, dead, 1270 days
9.5
TCGA-BP-4326-01A
0 years, female, white, stage:Stage I, dead, 1625 days
9.4
TCGA-B0-5097-01A
0 years, female, white, stage:Stage III, alive, 665 days
9.4
TCGA-BP-5173-01A
0 years, male, white, stage:Stage I, dead, 62 days
9.4
TCGA-B8-4143-01A
0 years, female, white, stage:Stage IV, dead, 709 days
9.3
TCGA-B0-4700-01A
0 years, male, white, stage:Stage IV, dead, 1980 days
9.3
TCGA-BP-4345-01A
0 years, male, white, stage:Stage III, alive, 1516 days
9.2
TCGA-B2-4099-01A
0 years, male, white, stage:Stage I, alive, 972 days
9.2
TCGA-B0-4844-01A
0 years, male, white, stage:Stage IV, dead, 313 days
9.2
TCGA-BP-4777-01A
0 years, male, white, stage:Stage I, alive, 1731 days
9.1
TCGA-A3-3385-01A
0 years, female, white, stage:Stage I, alive, 1993 days
9.1
TCGA-BP-4803-01A
0 years, male, white, stage:Stage III, alive, 204 days
9.0
TCGA-CJ-4870-01A
0 years, female, black or african american, stage:Stage III, alive, 1498 days
9.0
TCGA-CJ-4635-01A
0 years, male, white, stage:Stage I, alive, 1416 days
9.0
TCGA-B0-5081-01A
0 years, female, white, stage:Stage III, dead, 362 days
9.0
TCGA-B0-5694-01A
0 years, male, white, stage:Stage III, dead, 480 days
9.0
TCGA-BP-4174-01A
0 years, male, white, stage:Stage II, alive, 1879 days
9.0
TCGA-CJ-4887-01A
0 years, male, white, stage:Stage IV, dead, 932 days
8.9
TCGA-BP-4327-01A
0 years, female, white, stage:Stage II, dead, 109 days
8.9
TCGA-CJ-4891-01A
0 years, female, white, stage:Stage III, dead, 819 days
8.9
TCGA-B0-4688-01A
0 years, male, white, stage:Stage IV, dead, 101 days
8.8
TCGA-CZ-5464-01A
0 years, male, white, stage:Stage IV, alive, 2128 days
8.8
TCGA-CZ-5468-01A
0 years, male, white, stage:Stage IV, dead, 59 days
8.8
TCGA-CZ-4859-01A
0 years, female, white, stage:Stage I, alive, 1787 days
8.8
TCGA-B8-A54I-01A
0 years, male, black or african american, stage:Stage I, alive, 150 days
8.8
TCGA-CW-5581-01A
0 years, male, white, stage:Stage I, alive, 2799 days
8.7
TCGA-B0-5096-01A
0 years, female, white, stage:Stage III, dead, 68 days
8.7
TCGA-B0-4823-01A
0 years, male, white, stage:Stage I, dead, 454 days
8.7
TCGA-CJ-4918-01A
0 years, male, white, stage:Stage IV, dead, 93 days
8.7
TCGA-EU-5905-01A
0 years, female, white, stage:Stage I, alive, 119 days
8.6
TCGA-BP-4762-01A
0 years, male, white, stage:Stage I, dead, 1343 days
8.6
TCGA-BP-4987-01A
0 years, female, asian, stage:Stage I, alive, 1124 days
8.6
TCGA-CJ-6031-01A
0 years, male, white, stage:Stage I, alive, 1906 days
8.6
TCGA-B2-3924-01A
0 years, male, white, stage:Stage I, alive, 1092 days
8.4
TCGA-B0-4837-01A
0 years, male, white, stage:Stage I, dead, 1378 days
8.4
TCGA-B0-4841-01A
0 years, male, white, stage:Stage IV, dead, 204 days
8.4
TCGA-B0-4712-01A
0 years, male, white, stage:Stage IV, dead, 1337 days
8.4
TCGA-A3-3319-01A
0 years, male, white, stage:Stage I, alive, 1130 days
8.4
TCGA-BP-4969-01A
0 years, female, white, stage:Stage I, alive, 1794 days
8.3
TCGA-CZ-4861-01A
0 years, male, white, stage:Stage II, dead, 446 days
8.3
TCGA-A3-3308-01A
0 years, female, white, stage:Stage III, alive, 16 days
8.3
TCGA-CZ-5466-01A
0 years, male, stage:Stage III, alive, 685 days
8.2
TCGA-B0-4827-01A
0 years, female, white, stage:Stage III, dead, 885 days
8.2
TCGA-CZ-5456-01A
0 years, male, white, stage:Stage II, alive, 2422 days
8.1
TCGA-BP-4176-01A
0 years, male, white, stage:Stage I, alive, 1955 days
8.1
TCGA-BP-4170-01A
0 years, female, white, stage:Stage I, dead, 2343 days
8.1
TCGA-B0-4836-01A
0 years, male, white, stage:Stage IV, dead, 1238 days
8.0
TCGA-BP-4976-01A
0 years, male, white, stage:Stage I, alive, 1632 days
8.0
TCGA-BP-4342-01A
0 years, male, white, stage:Stage II, dead, 2256 days
8.0
TCGA-G6-A8L7-01A
0 years, female, black or african american, stage:Stage I, alive, 2133 days
7.9
TCGA-B0-5402-01A
0 years, male, white, stage:Stage IV, alive, 1290 days
7.9
TCGA-CJ-6028-01A
0 years, male, white, stage:Stage IV, dead, 1625 days
7.9
TCGA-B4-5832-01A
0 years, male, white, stage:Stage III, alive, 155 days
7.9
TCGA-B2-4098-01A
0 years, female, black or african american, stage:Stage I, dead, 51 days
7.8
TCGA-CJ-4871-01A
0 years, male, white, stage:Stage IV, alive, 2423 days
7.8
TCGA-BP-5191-01A
0 years, male, white, stage:Stage III, alive, 967 days
7.8
TCGA-BP-4995-01A
0 years, male, white, stage:Stage I, alive, 1371 days
7.8
TCGA-BP-5185-01A
0 years, male, white, stage:Stage I, alive, 1132 days
7.7
TCGA-B8-5158-01A
0 years, male, white, stage:Stage III, alive, 1218 days
7.6
TCGA-CZ-4854-01A
0 years, male, white, stage:Stage I, dead, 1404 days
7.6
TCGA-BP-4960-01A
0 years, male, white, stage:Stage II, alive, 2172 days
7.6
TCGA-CZ-5460-01A
0 years, male, white, stage:Stage IV, alive, 2873 days
7.6
TCGA-BP-4962-01A
0 years, male, white, stage:Stage II, alive, 1785 days
7.6
TCGA-CJ-4895-01A
0 years, male, white, stage:Stage IV, dead, 1200 days
7.4
TCGA-A3-3382-01A
0 years, male, white, stage:Stage I, alive, 574 days
7.4
TCGA-CJ-5671-01A
0 years, male, white, stage:Stage I, alive, 3987 days
7.4
TCGA-B0-5109-01A
0 years, male, white, stage:Stage III, dead, 587 days
7.2
TCGA-BP-5198-01A
0 years, male, white, stage:Stage III, alive, 603 days
7.2
TCGA-BP-4797-01A
0 years, male, white, stage:Stage III, alive, 1107 days
7.1
TCGA-AK-3428-01A
0 years, male, white, stage:Stage III, alive, 3728 days
7.0
TCGA-BP-4325-01A
0 years, female, white, stage:Stage I, alive, 2964 days
7.0
TCGA-CZ-5457-01A
0 years, male, white, stage:Stage III, alive, 2754 days
6.9
TCGA-B0-4690-01A
0 years, male, white, stage:Stage IV, dead, 43 days
6.9
TCGA-AK-3440-01A
0 years, male, white, stage:Stage I, alive, 2865 days
6.9
TCGA-CW-5588-01A
0 years, female, white, stage:Stage I, alive, 2017 days
6.8
TCGA-BP-4160-01A
0 years, male, white, stage:Stage III, alive, 2881 days
6.7
TCGA-CJ-4912-01A
0 years, male, white, stage:Stage II, alive, 1657 days
6.6
TCGA-BP-4967-01A
0 years, male, white, stage:Stage III, alive, 205 days
6.5
TCGA-A3-3316-01A
0 years, male, white, stage:Stage II, alive, 1493 days
6.4
TCGA-A3-3335-01A
0 years, male, white, stage:Stage II, alive, 1886 days
6.4
TCGA-B8-4620-01A
0 years, female, white, stage:Stage III, alive, 777 days
6.1
TCGA-BP-4768-01A
0 years, female, white, stage:Stage I, alive, 400 days
6.0
TCGA-EU-5907-01A
0 years, male, white, stage:Stage III, alive, 127 days
5.9
TCGA-B8-4621-01A
0 years, male, black or african american, stage:Stage I, alive, 788 days
5.9
TCGA-B0-4848-01A
0 years, male, white, stage:Stage III, dead, 883 days
5.9
TCGA-BP-4983-01A
0 years, female, asian, stage:Stage III, alive, 1413 days
5.9
TCGA-BP-4787-01A
0 years, female, white, stage:Stage IV, dead, 480 days
5.9
TCGA-BP-5175-01A
0 years, male, white, stage:Stage I, alive, 932 days
5.8
TCGA-BP-4759-01A
0 years, male, white, stage:Stage I, alive, 2372 days
5.8
TCGA-BP-4994-01A
0 years, male, white, stage:Stage I, alive, 1308 days
5.6
TCGA-BP-4963-01A
0 years, male, white, stage:Stage I, alive, 1834 days
5.6
TCGA-BP-4166-01A
0 years, male, white, stage:Stage III, alive, 13 days
5.6
TCGA-BP-5180-01A
0 years, male, white, stage:Stage I, alive, 2263 days
5.5
TCGA-CZ-4858-01A
0 years, male, white, stage:Stage II, dead, 2105 days
5.5
TCGA-A3-3346-01A
0 years, male, white, stage:Stage I, dead, 137 days
5.5
TCGA-B8-5162-01A
0 years, male, white, stage:Stage II, alive, 36 days
5.3
TCGA-CZ-4860-01A
0 years, male, white, stage:Stage IV, dead, 206 days
5.3
TCGA-B0-5116-01A
0 years, male, white, stage:Stage III, alive, 1274 days
5.1
TCGA-BP-5169-01A
0 years, male, white, stage:Stage I, alive, 193 days
5.1
TCGA-B0-4707-01A
0 years, male, white, stage:Stage III, dead, 600 days
5.1
TCGA-BP-4959-01A
0 years, male, white, stage:Stage I, alive, 2660 days
5.0
TCGA-AK-3425-01A
0 years, male, white, stage:Stage I, alive, 3343 days
4.9
TCGA-B0-4696-01A
0 years, male, white, stage:Stage III, dead, 866 days
4.9
TCGA-B0-5706-01A
0 years, male, white, stage:Stage II, alive, 3205 days
4.9
TCGA-CJ-5679-01A
0 years, male, white, stage:Stage III, dead, 679 days
4.9
TCGA-B0-4698-01A
0 years, male, white, stage:Stage IV, dead, 42 days
4.8
TCGA-B0-5084-01A
0 years, male, white, stage:Stage IV, dead, 222 days
4.7
TCGA-B0-5083-01A
0 years, male, white, stage:Stage I, dead, 1045 days
4.7
TCGA-BP-5178-01A
0 years, male, white, stage:Stage IV, dead, 1912 days
4.7
TCGA-B4-5835-01A
0 years, female, white, stage:Stage I, alive, 16 days
4.5
TCGA-BP-4338-01A
0 years, male, white, stage:Stage I, alive, 2859 days
4.5
TCGA-B0-4694-01A
0 years, male, white, stage:Stage III, dead, 106 days
4.4
TCGA-BP-4781-01A
0 years, male, white, stage:Stage I, alive, 2080 days
4.3
TCGA-BP-4343-01A
0 years, male, white, stage:Stage III, dead, 1912 days
4.1
TCGA-AK-3443-01A
0 years, male, white, stage:Stage II, alive, 1423 days
3.8
TCGA-B8-4619-01A
0 years, male, white, stage:Stage I, alive, 523 days
3.8
TCGA-B0-5098-01A
0 years, female, black or african american, stage:Stage I, dead, 1584 days
3.7
TCGA-A3-3313-01A
0 years, male, black or african american, stage:Stage I, dead, 735 days
3.5
TCGA-AK-3436-01A
0 years, male, white, stage:Stage IV, alive, 3331 days
3.5
TCGA-AK-3465-01A
0 years, female, black or african american, stage:Stage I, alive, 369 days
3.5
TCGA-B0-5702-01A
0 years, male, white, stage:Stage I, alive, 2172 days
3.3
TCGA-B0-4834-01A
0 years, male, white, stage:Stage I, dead, 2090 days
2.9
TCGA-A3-3328-01A
0 years, male, white, stage:Stage I, alive, 1385 days
2.7
TCGA-BP-4799-01A
0 years, male, white, stage:Stage III, dead, 1133 days
2.5
TCGA-AK-3427-01A
0 years, male, white, stage:Stage I, alive, 3583 days
2.4
TCGA-BP-4334-01A
0 years, male, white, stage:Stage III, dead, 645 days
2.1
TCGA-A3-3374-01A
0 years, female, black or african american, stage:Stage I, alive, 1314 days
2.0
TCGA-B0-5117-01A
0 years, male, white, stage:Stage I, alive, 1608 days
1.8
TCGA-AS-3777-01A
0 years, male, white, stage:Stage I, alive, 1238 days
1.5
TCGA-AK-3433-01A
0 years, female, white, stage:Stage II, alive, 3409 days
1.5
TCGA-B2-3923-01A
0 years, male, white, stage:Stage II, alive, 992 days
1.2
TCGA-AK-3447-01A
0 years, male, white, stage:Stage II, alive, 1217 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SYNE1 is not prognostic in Kidney Renal Clear Cell Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.3
Number of samples
100
Samples
Sample
Description
TPM
ccRCC-27
0 years, male, NA, stage:pT1aN0M0, alive, 1590 days
33.0
ccRCC-87
0 years, male, NA, stage:pT1bN0M0, alive, 2370 days
32.3
ccRCC-3
0 years, male, NA, stage:pT3bN1M0, dead, 240 days
31.2
ccRCC-43
0 years, female, NA, stage:pT1bN0M0, alive, 1050 days
29.0
ccRCC-29
0 years, female, NA, stage:pT1aN0M0, alive, 1710 days
28.4
ccRCC-60
0 years, female, NA, stage:pT1aN0M0, alive, 1470 days
28.1
ccRCC-20
0 years, female, NA, stage:pT3aN0M1, alive, 930 days
26.7
ccRCC-72
0 years, male, NA, stage:pT1bN0M0, alive, 2760 days
25.6
ccRCC-73
0 years, male, NA, stage:pT1aN0M0, alive, 2640 days
24.8
ccRCC-28
0 years, male, NA, stage:pT1bN0M0, alive, 1530 days
24.1
ccRCC-10
0 years, male, NA, stage:pT3aN2M1, dead, 90 days
23.8
ccRCC-8
0 years, male, NA, stage:pT1bN0M0, alive, 2400 days
23.2
ccRCC-16
0 years, male, NA, stage:pT2N0M0, alive, 2190 days
23.1
ccRCC-4
0 years, male, NA, stage:pT1bN0M0, dead, 270 days
22.3
ccRCC-9
0 years, male, NA, stage:pT2N1M1, dead, 360 days
21.6
ccRCC-59
0 years, male, NA, stage:pT1bN0M0, alive, 930 days
21.4
ccRCC-77
0 years, male, NA, stage:pT1bN0M0, alive, 1860 days
21.2
ccRCC-21
0 years, male, NA, stage:pT1bN0M0, alive, 1080 days
21.1
ccRCC-104
0 years, female, NA, stage:pT1aN0M0, alive, 3480 days
20.5
ccRCC-89
0 years, male, NA, stage:pT1aN0M0, alive, 3510 days
20.3
ccRCC-53
0 years, male, NA, stage:pT1aN0M0, alive, 1260 days
20.0
ccRCC-76
0 years, female, NA, stage:pT3aN0M1, dead, 960 days
20.0
ccRCC-45
0 years, male, NA, stage:pT1aN0M0, alive, 1020 days
19.9
ccRCC-15
0 years, female, NA, stage:pT2N0M0, dead, 2070 days
19.8
ccRCC-54
0 years, male, NA, stage:pT1bN0M0, alive, 1200 days
19.7
ccRCC-39
0 years, male, NA, stage:pT2N0M0, alive, 900 days
19.5
ccRCC-11
0 years, male, NA, stage:pT1aN0M0, alive, 2370 days
19.5
ccRCC-17
0 years, female, NA, stage:pT1bN0M0, alive, 2220 days
19.0
ccRCC-97
0 years, male, NA, stage:pT1aN2M1, dead, 990 days
18.9
ccRCC-85
0 years, female, NA, stage:pT1bN0M0, alive, 3330 days
18.4
ccRCC-49
0 years, male, NA, stage:pT3bN0M0, alive, 1290 days
18.4
ccRCC-19
0 years, female, NA, stage:pT2N0M0, alive, 2100 days
18.4
ccRCC-7
0 years, female, NA, stage:pT2N0M0, alive, 330 days
18.2
ccRCC-31
0 years, male, NA, stage:pT1aN0M0, alive, 1560 days
18.0
ccRCC-103
0 years, female, NA, stage:pT1aN0M0, alive, 4350 days
17.9
ccRCC-79
0 years, male, NA, stage:pT1bN0M0, alive, 2670 days
17.7
ccRCC-6
0 years, male, NA, stage:pT1bN0M0, alive, 2820 days
17.4
ccRCC-18
0 years, female, NA, stage:pT1aN0M0, alive, 2130 days
17.2
ccRCC-5
0 years, male, NA, stage:pT1aN0M0, alive, 2940 days
16.9
ccRCC-44
0 years, female, NA, stage:pT1bN0M0, alive, 1050 days
16.7
ccRCC-92
0 years, male, NA, stage:pT1aN0M0, alive, 3660 days
16.6
ccRCC-35
0 years, male, NA, stage:pT1aN0M0, alive, 1380 days
16.3
ccRCC-36
0 years, male, NA, stage:pT2N0M0, alive, 1410 days
16.2
ccRCC-94
0 years, male, NA, stage:pT1bN0M0, dead, 480 days
16.2
ccRCC-37
0 years, female, NA, stage:pT1aN0M0, alive, 1500 days
16.0
ccRCC-83
0 years, male, NA, stage:pT1aN0M0, alive, 300 days
16.0
ccRCC-93
0 years, male, NA, stage:pT1bN0M0, alive, 3660 days
15.9
ccRCC-102
0 years, male, NA, stage:pT1bN0M0, alive, 4260 days
15.8
ccRCC-105
0 years, male, NA, stage:pT1aN0M0, alive, 2190 days
15.3
ccRCC-58
0 years, male, NA, stage:pT1aN0M0, alive, 1110 days
15.1
ccRCC-82
0 years, male, NA, stage:pT1aN0M0, alive, 3090 days
15.0
ccRCC-52
0 years, female, NA, stage:pT3bN0M1, alive, 1350 days
14.8
ccRCC-65
0 years, male, NA, stage:pT3bN0M1, dead, 300 days
14.6
ccRCC-61
0 years, male, NA, stage:pT1aN0M0, alive, 1470 days
14.4
ccRCC-23
0 years, male, NA, stage:pT1bN0M0, alive, 1170 days
14.3
ccRCC-99
0 years, female, NA, stage:pT2N0M0, alive, 3330 days
14.1
ccRCC-46
0 years, male, NA, stage:pT1bN0M0, alive, 990 days
13.6
ccRCC-78
0 years, female, NA, stage:pT1aN0M0, alive, 2610 days
13.5
ccRCC-100
0 years, male, NA, stage:pT1aN0M0, alive, 4260 days
13.4
ccRCC-91
0 years, male, NA, stage:pT1aN0M0, dead, 1890 days
13.3
ccRCC-66
0 years, female, NA, stage:pT3bN0M1, alive, 2520 days
13.0
ccRCC-62
0 years, male, NA, stage:pT1bN0M0, alive, 1620 days
12.8
ccRCC-70
0 years, male, NA, stage:pT4N0M1, dead, 540 days
12.8
ccRCC-41
0 years, male, NA, stage:pT3bN0M0, dead, 540 days
12.3
ccRCC-96
0 years, male, NA, stage:pT1aN0M0, alive, 3930 days
12.3
ccRCC-86
0 years, female, NA, stage:pT1bN0M0, alive, 3390 days
12.0
ccRCC-68
0 years, male, NA, stage:pT1bN0M0, alive, 2640 days
11.6
ccRCC-1
0 years, female, NA, stage:pT1bN0M0, alive, 3330 days
11.4
ccRCC-25
0 years, male, NA, stage:pT1aN0M0, alive, 1350 days
11.3
ccRCC-22
0 years, male, NA, stage:pT3bN0M0, dead, 330 days
11.2
ccRCC-81
0 years, male, NA, stage:pT3aN2M0, dead, 1290 days
10.8
ccRCC-98
0 years, male, NA, stage:pT1aN0M0, alive, 30 days
10.8
ccRCC-75
0 years, male, NA, stage:pT3aN1M1, dead, 180 days
10.7
ccRCC-95
0 years, male, NA, stage:pT1bN0M0, alive, 3960 days
10.7
ccRCC-38
0 years, male, NA, stage:pT1aN0M0, alive, 1380 days
10.7
ccRCC-71
0 years, male, NA, stage:pT1bN0M0, alive, 2160 days
10.1
ccRCC-80
0 years, male, NA, stage:pT2N0M0, alive, 3000 days
10.1
ccRCC-42
0 years, male, NA, stage:pT3aN0M0, alive, 1170 days
9.7
ccRCC-34
0 years, male, NA, stage:pT3bN0M1, alive, 1530 days
9.3
ccRCC-40
0 years, male, NA, stage:pT1aN0M0, alive, 1020 days
9.3
ccRCC-67
0 years, male, NA, stage:pT1aN0M0, dead, 1260 days
9.2
ccRCC-48
0 years, male, NA, stage:pT1bN0M0, alive, 990 days
9.1
ccRCC-50
0 years, male, NA, stage:pT3bN0M0, alive, 900 days
9.0
ccRCC-56
0 years, male, NA, stage:pT1aN0M0, alive, 1950 days
8.6
ccRCC-55
0 years, female, NA, stage:pT3bN0M0, alive, 1260 days
8.5
ccRCC-106
0 years, male, NA, stage:pT1aN0M0, dead, 1890 days
8.3
ccRCC-13
0 years, female, NA, stage:pT3aN2M0, dead, 540 days
8.1
ccRCC-88
0 years, male, NA, stage:pT1aN0M0, alive, 2880 days
7.8
ccRCC-32
0 years, male, NA, stage:pT2N0M0, dead, 1320 days
7.4
ccRCC-26
0 years, male, NA, stage:pT1bN0M0, alive, 1800 days
7.4
ccRCC-12
0 years, male, NA, stage:pT1aN0M0, alive, 900 days
6.9
ccRCC-2
0 years, male, NA, stage:pT1aN0M1, dead, 2190 days
6.7
ccRCC-30
0 years, male, NA, stage:pT2N0M0, dead, 420 days
6.3
ccRCC-51
0 years, male, NA, stage:pT3aN0M0, alive, 1410 days
5.6
ccRCC-14
0 years, male, NA, stage:pT3cN0M0, alive, 2280 days
5.5
ccRCC-84
0 years, male, NA, stage:pT1bN0M0, alive, 2010 days
4.9
ccRCC-64
0 years, male, NA, stage:pT3aN0M0, alive, 2430 days
4.7
ccRCC-69
0 years, male, NA, stage:pT1aN0M0, alive, 2670 days
4.5
ccRCC-24
0 years, male, NA, stage:pT3bN0M0, dead, 750 days
4.4
ccRCC-90
0 years, male, NA, stage:pT1aN0M0, dead, 1170 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SYNE1 is not prognostic in Kidney Renal Papillary Cell Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.5
Number of samples
282
Samples
Sample
Description
TPM
TCGA-AL-3467-01A
0 years, female, white, stage:'--, alive, 2135 days
134.8
TCGA-DW-7839-01A
0 years, female, white, stage:Stage I, alive, 419 days
117.8
TCGA-B3-4103-01A
0 years, male, white, stage:Stage I, alive, 930 days
69.2
TCGA-G7-A8LD-01A
0 years, male, white, stage:Stage III, dead, 514 days
60.9
TCGA-4A-A93W-01A
0 years, female, white, stage:Stage I, alive, 4 days
58.5
TCGA-F9-A7Q0-01A
0 years, female, asian, stage:Stage I, alive, 398 days
57.3
TCGA-GL-7773-01A
0 years, male, white, stage:Stage I, alive, 393 days
54.2
TCGA-BQ-5876-01A
0 years, male, white, stage:Stage I, alive, 586 days
53.2
TCGA-IA-A83W-01A
0 years, male, white, stage:Stage I, dead, 2043 days
53.1
TCGA-B9-A5W7-01A
0 years, male, black or african american, stage:Stage I, alive, 585 days
51.2
TCGA-A4-7583-01A
0 years, male, black or african american, stage:Stage I, alive, 3 days
48.7
TCGA-IA-A40U-01A
0 years, male, white, stage:Stage III, alive, 511 days
48.4
TCGA-G7-A8LE-01A
0 years, male, white, stage:Stage I, alive, 2453 days
48.2
TCGA-UZ-A9PP-01A
0 years, male, white, stage:Stage I, alive, 3010 days
45.3
TCGA-B9-4116-01A
0 years, female, black or african american, stage:'--, alive, 627 days
43.7
TCGA-WN-A9G9-01A
0 years, male, white, stage:Stage I, alive, 791 days
43.3
TCGA-5P-A9K8-01A
0 years, female, white, stage:'--, alive, 1309 days
42.8
TCGA-A4-8515-01A
0 years, male, american indian or alaska native, stage:Stage I, alive, 709 days
41.9
TCGA-Y8-A894-01A
0 years, female, white, stage:Stage I, alive, 567 days
41.7
TCGA-B9-A5W8-01A
0 years, male, black or african american, stage:Stage II, alive, 524 days
40.7
TCGA-DZ-6133-01A
0 years, female, white, stage:Stage I, dead, 1557 days
40.7
TCGA-G7-6792-01A
0 years, male, black or african american, stage:Stage I, alive, 2765 days
40.2
TCGA-2Z-A9JK-01A
0 years, male, white, stage:Stage III, alive, 1186 days
39.4
TCGA-AL-7173-01A
0 years, female, white, stage:Stage IV, alive, 2060 days
38.5
TCGA-MH-A856-01A
0 years, male, white, stage:Stage I, alive, 947 days
38.3
TCGA-P4-A5ED-01A
0 years, male, white, stage:Stage I, alive, 2816 days
37.4
TCGA-A4-8312-01A
0 years, male, black or african american, stage:Stage I, alive, 708 days
37.3
TCGA-UZ-A9PK-01A
0 years, male, white, stage:Stage I, alive, 3571 days
36.3
TCGA-MH-A854-01A
0 years, female, black or african american, stage:Stage I, alive, 536 days
35.8
TCGA-B1-A655-01A
0 years, female, white, stage:Stage I, alive, 510 days
35.4
TCGA-AL-3472-01A
0 years, male, black or african american, stage:'--, alive, 2029 days
35.2
TCGA-DW-5560-01A
0 years, female, white, stage:Stage I, alive, 1486 days
34.7
TCGA-EV-5901-01A
0 years, female, white, stage:Stage I, alive, 1040 days
34.6
TCGA-G7-A8LC-01A
0 years, male, white, stage:Stage I, alive, 702 days
34.5
TCGA-BQ-5885-01A
0 years, male, white, stage:Stage III, alive, 921 days
34.1
TCGA-DW-7842-01A
0 years, male, white, stage:Stage I, alive, 92 days
34.0
TCGA-DW-7834-01A
0 years, male, white, stage:Stage I, alive, 3950 days
33.8
TCGA-AT-A5NU-01A
0 years, male, white, stage:Stage I, alive, 67 days
33.7
TCGA-SX-A71W-01A
0 years, male, white, stage:Stage I, alive, 1076 days
33.0
TCGA-BQ-5883-01A
0 years, female, black or african american, stage:Stage I, alive, 1242 days
32.5
TCGA-Y8-A897-01A
0 years, female, white, stage:Stage I, alive, 549 days
32.5
TCGA-B9-A5W9-01A
0 years, male, white, stage:Stage I, alive, 5 days
32.3
TCGA-BQ-5891-01A
0 years, female, white, stage:Stage III, alive, 29 days
31.6
TCGA-G7-A4TM-01A
0 years, male, black or african american, stage:Stage I, alive, 768 days
31.3
TCGA-B1-7332-01A
0 years, female, black or african american, stage:Stage II, alive, 1141 days
31.3
TCGA-UZ-A9PJ-01A
0 years, male, white, stage:Stage I, dead, 797 days
31.2
TCGA-UZ-A9PU-01A
0 years, male, white, stage:Stage I, dead, 933 days
30.9
TCGA-PJ-A5Z8-01A
0 years, female, white, stage:Stage I, alive, 600 days
30.8
TCGA-2Z-A9JG-01A
0 years, male, white, stage:Stage I, alive, 1662 days
30.6
TCGA-5P-A9K6-01A
0 years, male, white, stage:'--, alive, 1914 days
30.4
TCGA-IA-A40X-01A
0 years, female, black or african american, stage:Stage I, alive, 608 days
30.3
TCGA-UZ-A9PV-01A
0 years, male, white, stage:Stage I, alive, 1444 days
30.3
TCGA-HE-A5NK-01A
0 years, male, stage:'--, alive, 2228 days
30.1
TCGA-A4-8310-01A
0 years, male, white, stage:Stage III, alive, 780 days
30.0
TCGA-DW-7841-01A
0 years, male, black or african american, stage:Stage I, alive, 445 days
29.8
TCGA-BQ-5887-01A
0 years, male, white, stage:Stage III, alive, 771 days
29.4
TCGA-EV-5903-01A
0 years, male, white, stage:Stage I, alive, 757 days
28.8
TCGA-GL-A9DC-01A
0 years, female, white, stage:Stage I, alive, 392 days
28.7
TCGA-GL-7966-01A
0 years, female, white, stage:Stage III, alive, 112 days
28.5
TCGA-P4-A5E6-01A
0 years, male, black or african american, stage:Stage III, alive, 3035 days
28.4
TCGA-F9-A97G-01A
0 years, male, asian, stage:Stage III, alive, 13 days
28.2
TCGA-A4-8098-01A
0 years, male, black or african american, stage:Stage I, alive, 896 days
28.2
TCGA-UZ-A9PN-01A
0 years, male, white, stage:Stage III, dead, 1136 days
28.0
TCGA-2Z-A9J9-01A
0 years, male, black or african american, stage:Stage I, alive, 2294 days
27.8
TCGA-F9-A8NY-01A
0 years, female, asian, stage:Stage IV, alive, 36 days
27.8
TCGA-B3-3926-01A
0 years, female, white, stage:Stage I, alive, 883 days
27.5
TCGA-IZ-8196-01A
0 years, male, white, stage:Stage I, alive, 649 days
27.3
TCGA-B9-5155-01A
0 years, male, white, stage:Stage III, alive, 665 days
27.2
TCGA-DZ-6132-01A
0 years, male, stage:Stage I, alive, 2460 days
27.1
TCGA-UZ-A9PL-01A
0 years, male, white, stage:Stage II, alive, 3152 days
27.1
TCGA-DW-7836-01A
0 years, male, white, stage:Stage I, alive, 1093 days
27.0
TCGA-SX-A71U-01A
0 years, male, white, stage:Stage I, alive, 1357 days
26.9
TCGA-2Z-A9JL-01A
0 years, male, black or african american, stage:Stage I, alive, 1006 days
26.9
TCGA-B9-4114-01A
0 years, male, black or african american, stage:'--, alive, 857 days
26.7
TCGA-BQ-7049-01A
0 years, female, white, stage:Stage I, dead, 1364 days
26.7
TCGA-KV-A6GD-01A
0 years, male, white, stage:Stage I, alive, 560 days
26.7
TCGA-UN-AAZ9-01A
0 years, female, black or african american, stage:Stage I, alive, 548 days
26.6
TCGA-BQ-5877-01A
0 years, male, black or african american, stage:Stage IV, dead, 270 days
26.5
TCGA-P4-A5E7-01A
0 years, female, white, stage:Stage I, alive, 2649 days
26.4
TCGA-5P-A9KA-01A
0 years, male, white, stage:'--, alive, 395 days
26.2
TCGA-A4-A4ZT-01A
0 years, female, white, stage:Stage I, alive, 516 days
25.7
TCGA-B3-3925-01A
0 years, male, white, stage:Stage III, alive, 1029 days
25.6
TCGA-SX-A71S-01A
0 years, female, white, stage:Stage I, alive, 1504 days
25.3
TCGA-PJ-A5Z9-01A
0 years, female, white, stage:Stage I, alive, 540 days
25.1
TCGA-DZ-6134-01A
0 years, male, white, stage:Stage I, alive, 1856 days
25.1
TCGA-A4-7732-01A
0 years, male, black or african american, stage:'--, alive, 582 days
24.8
TCGA-SX-A7SR-01A
0 years, male, white, stage:Stage II, alive, 805 days
24.7
TCGA-SX-A7SU-01A
0 years, male, stage:Stage I, alive, 1331 days
24.5
TCGA-2Z-A9JE-01A
0 years, male, white, stage:Stage I, alive, 1728 days
24.2
TCGA-2Z-A9JS-01A
0 years, male, white, stage:Stage I, dead, 492 days
24.1
TCGA-DW-7840-01A
0 years, male, black or african american, stage:Stage I, alive, 114 days
24.1
TCGA-DZ-6135-01A
0 years, male, stage:Stage I, alive, 2269 days
23.9
TCGA-SX-A71R-01A
0 years, male, white, stage:Stage I, alive, 1457 days
23.8
TCGA-SX-A7SN-01A
0 years, male, white, stage:Stage I, alive, 578 days
23.6
TCGA-BQ-7050-01A
0 years, female, white, stage:Stage I, alive, 1864 days
22.7
TCGA-DW-5561-01A
0 years, male, black or african american, stage:Stage I, alive, 414 days
22.7
TCGA-J7-6720-01A
0 years, male, asian, stage:Stage I, alive, 388 days
22.3
TCGA-B1-A656-01A
0 years, male, white, stage:Stage I, alive, 618 days
22.3
TCGA-A4-7828-01A
0 years, female, black or african american, stage:Stage I, alive, 238 days
22.0
TCGA-2Z-A9JR-01A
0 years, male, white, stage:Stage I, alive, 161 days
21.8
TCGA-P4-A5EA-01A
0 years, female, white, stage:Stage III, dead, 201 days
21.7
TCGA-2Z-A9JN-01A
0 years, female, black or african american, stage:Stage I, alive, 740 days
21.6
TCGA-BQ-5889-01A
0 years, male, white, stage:Stage IV, dead, 329 days
21.5
TCGA-BQ-5884-01A
0 years, female, black or african american, stage:Stage I, alive, 792 days
21.5
TCGA-GL-A59R-01A
0 years, male, white, stage:Stage III, alive, 378 days
21.4
TCGA-P4-AAVK-01A
0 years, male, white, stage:Stage III, alive, 1590 days
21.1
TCGA-HE-A5NJ-01A
0 years, male, stage:'--, alive, 1726 days
21.1
TCGA-IA-A83V-01A
0 years, male, white, stage:Stage I, dead, 2941 days
21.0
TCGA-AL-3473-01A
0 years, male, white, stage:Stage II, alive, 1906 days
21.0
TCGA-UZ-A9PR-01A
0 years, male, white, stage:Stage I, alive, 2191 days
20.9
TCGA-A4-8516-01A
0 years, male, white, stage:Stage III, alive, 23 days
20.9
TCGA-2Z-A9J3-01A
0 years, male, white, stage:Stage II, dead, 1771 days
20.9
TCGA-P4-A5EB-01A
0 years, male, white, stage:Stage I, alive, 2477 days
20.7
TCGA-2Z-A9J5-01A
0 years, male, white, stage:Stage II, alive, 3050 days
20.7
TCGA-G7-7501-01A
0 years, female, black or african american, stage:Stage III, dead, 624 days
20.7
TCGA-P4-AAVL-01A
0 years, male, white, stage:Stage III, dead, 487 days
20.1
TCGA-BQ-5878-01A
0 years, female, white, stage:Stage III, alive, 1938 days
20.0
TCGA-DW-7837-01A
0 years, male, black or african american, stage:Stage I, alive, 1142 days
19.8
TCGA-G7-6797-01A
0 years, male, white, stage:Stage III, alive, 765 days
19.8
TCGA-HE-A5NH-01A
0 years, male, stage:Stage I, alive, 791 days
19.8
TCGA-2Z-A9JD-01A
0 years, male, white, stage:Stage I, alive, 1060 days
19.7
TCGA-Y8-A8RY-01A
0 years, male, white, stage:Stage I, alive, 769 days
19.6
TCGA-G7-6789-01A
0 years, female, white, stage:Stage IV, dead, 122 days
19.5
TCGA-IZ-A6M9-01A
0 years, male, white, stage:Stage I, alive, 376 days
19.3
TCGA-GL-A9DE-01A
0 years, male, black or african american, stage:Stage I, alive, 496 days
19.3
TCGA-AL-3471-01A
0 years, male, white, stage:Stage I, dead, 1500 days
19.1
TCGA-EV-5902-01A
0 years, male, white, stage:Stage I, alive, 578 days
19.0
TCGA-5P-A9JV-01A
0 years, male, white, stage:'--, alive, 2043 days
18.9
TCGA-KV-A6GE-01A
0 years, male, white, stage:Stage I, alive, 885 days
18.7
TCGA-2Z-A9J6-01A
0 years, male, white, stage:Stage I, alive, 1731 days
18.6
TCGA-O9-A75Z-01A
0 years, male, white, stage:Stage I, alive, 471 days
18.5
TCGA-A4-A6HP-01A
0 years, male, white, stage:Stage I, alive, 379 days
18.4
TCGA-B1-A47M-01A
0 years, male, black or african american, stage:Stage III, alive, 659 days
18.1
TCGA-A4-7288-01A
0 years, female, white, stage:'--, alive, 1857 days
17.7
TCGA-BQ-5888-01A
0 years, female, white, stage:Stage I, alive, 403 days
17.7
TCGA-B9-4113-01A
0 years, male, black or african american, stage:Stage I, dead, 1536 days
17.5
TCGA-MH-A561-01A
0 years, male, white, stage:Stage I, alive, 841 days
17.4
TCGA-Y8-A8RZ-01A
0 years, male, white, stage:Stage I, alive, 205 days
17.4
TCGA-BQ-7059-01A
0 years, male, white, stage:Stage I, alive, 232 days
17.3
TCGA-MH-A55W-01A
0 years, male, black or african american, stage:Stage I, alive, 1043 days
17.2
TCGA-UZ-A9PS-01A
0 years, female, black or african american, stage:Stage II, alive, 2167 days
17.1
TCGA-SX-A71V-01A
0 years, male, white, stage:Stage I, alive, 876 days
16.8
TCGA-A4-A5Y1-01A
0 years, male, white, stage:Stage III, dead, 395 days
16.8
TCGA-MH-A857-01A
0 years, male, black or african american, stage:Stage I, alive, 890 days
16.7
TCGA-B1-A657-01A
0 years, male, white, stage:Stage I, alive, 641 days
16.7
TCGA-HE-7129-01A
male, stage:Stage II, alive, 2492 days
16.7
TCGA-BQ-5892-01A
0 years, male, white, stage:Stage I, alive, 364 days
16.4
TCGA-BQ-5894-01A
0 years, male, stage:Stage IV, alive, 84 days
16.2
TCGA-Y8-A8S0-01A
0 years, male, white, stage:Stage I, alive, 183 days
16.1
TCGA-B1-A47N-01A
0 years, male, white, stage:Stage I, alive, 1110 days
16.1
TCGA-A4-7584-01A
0 years, male, black or african american, stage:Stage I, alive, 650 days
15.9
TCGA-GL-A59T-01A
0 years, male, white, stage:Stage I, alive, 546 days
15.8
TCGA-SX-A7SO-01A
0 years, male, white, stage:Stage I, alive, 1257 days
15.8
TCGA-A4-A57E-01A
0 years, male, white, stage:Stage IV, dead, 258 days
15.6
TCGA-G7-6796-01A
0 years, male, white, stage:Stage I, alive, 2173 days
15.5
TCGA-BQ-7062-01A
0 years, male, black or african american, stage:Stage I, alive, 116 days
15.5
TCGA-2Z-A9JO-01A
0 years, female, black or african american, stage:Stage I, alive, 949 days
15.3
TCGA-GL-6846-01A
0 years, male, white, stage:Stage IV, alive, 5925 days
15.3
TCGA-G7-6793-01A
0 years, female, white, stage:Stage IV, dead, 336 days
15.2
TCGA-B1-A654-01A
0 years, female, black or african american, stage:Stage I, alive, 616 days
15.2
TCGA-2Z-A9JM-01A
0 years, male, white, stage:Stage I, alive, 934 days
15.1
TCGA-A4-7997-01A
0 years, male, white, stage:Stage I, alive, 927 days
15.0
TCGA-KV-A74V-01A
0 years, male, white, stage:Stage I, alive, 347 days
15.0
TCGA-B3-8121-01A
0 years, female, black or african american, stage:Stage I, alive, 379 days
14.9
TCGA-UZ-A9PX-01A
0 years, male, white, stage:Stage I, alive, 1981 days
14.8
TCGA-B1-A47O-01A
0 years, female, white, stage:Stage I, alive, 842 days
14.7
TCGA-5P-A9K2-01A
0 years, male, white, stage:'--, alive, 2392 days
14.6
TCGA-A4-A5DU-01A
0 years, female, white, stage:Stage I, alive, 496 days
14.6
TCGA-Y8-A898-01A
0 years, male, white, stage:Stage I, alive, 475 days
14.6
TCGA-UZ-A9Q0-01A
0 years, male, white, stage:Stage I, alive, 3368 days
14.6
TCGA-DW-7838-01A
0 years, male, white, stage:Stage I, alive, 744 days
14.4
TCGA-UZ-A9PZ-01A
0 years, male, white, stage:Stage III, alive, 657 days
14.4
TCGA-P4-AAVO-01A
0 years, male, white, stage:Stage I, alive, 2400 days
14.3
TCGA-B9-A8YH-01A
0 years, male, black or african american, stage:Stage I, alive, 532 days
14.1
TCGA-2Z-A9JJ-01A
0 years, female, white, stage:Stage I, alive, 1213 days
13.9
TCGA-B9-4117-01A
0 years, female, black or african american, stage:'--, alive, 14 days
13.9
TCGA-5P-A9JW-01A
0 years, male, white, stage:'--, alive, 3241 days
13.8
TCGA-BQ-7058-01A
0 years, male, white, stage:Stage III, dead, 343 days
13.8
TCGA-G7-A8LB-01A
0 years, male, white, stage:Stage IV, alive, 547 days
13.7
TCGA-A4-8517-01A
0 years, male, white, stage:Stage I, alive, 597 days
13.7
TCGA-2K-A9WE-01A
0 years, male, white, stage:Stage II, alive, 214 days
13.6
TCGA-UZ-A9PM-01A
0 years, male, white, stage:Stage II, alive, 3811 days
13.6
TCGA-SX-A7SQ-01A
0 years, male, white, stage:Stage I, alive, 1266 days
13.6
TCGA-B3-A6W5-01A
0 years, male, black or african american, stage:Stage I, alive, 309 days
13.4
TCGA-BQ-5879-01A
0 years, female, white, stage:Stage III, dead, 697 days
13.4
TCGA-A4-A5XZ-01A
0 years, female, white, stage:Stage II, alive, 479 days
13.4
TCGA-2Z-A9JP-01A
0 years, male, white, stage:Stage I, alive, 893 days
13.2
TCGA-GL-A9DD-01A
0 years, male, white, stage:Stage I, alive, 341 days
13.1
TCGA-2Z-A9J8-01A
0 years, male, white, stage:Stage I, alive, 2790 days
13.1
TCGA-BQ-5893-01A
0 years, male, white, stage:Stage IV, dead, 241 days
13.1
TCGA-BQ-7061-01A
0 years, female, white, stage:Stage I, alive, 218 days
13.0
TCGA-P4-A5E8-01A
0 years, male, white, stage:Stage III, dead, 1306 days
13.0
TCGA-HE-A5NL-01A
0 years, male, stage:Stage I, alive, 767 days
12.9
TCGA-B9-4115-01A
0 years, male, black or african american, stage:Stage I, alive, 803 days
12.8
TCGA-5P-A9K4-01A
0 years, male, white, stage:'--, alive, 2184 days
12.7
TCGA-SX-A7SM-01A
0 years, male, black or african american, stage:Stage IV, dead, 363 days
12.5
TCGA-2Z-A9J1-01A
0 years, male, white, stage:Stage I, alive, 2298 days
12.4
TCGA-B9-5156-01A
0 years, male, white, stage:'--, alive, 1338 days
12.4
TCGA-F9-A4JJ-01A
0 years, female, black or african american, stage:Stage III, dead, 325 days
12.3
TCGA-MH-A562-01A
0 years, male, black or african american, stage:Stage I, alive, 616 days
12.1
TCGA-UZ-A9PO-01A
0 years, male, white, stage:Stage I, alive, 1911 days
12.1
TCGA-5P-A9KC-01A
0 years, female, white, stage:'--, alive, 377 days
12.1
TCGA-BQ-7055-01A
0 years, male, white, stage:Stage I, alive, 799 days
12.1
TCGA-MH-A55Z-01A
0 years, male, black or african american, stage:Stage I, alive, 845 days
11.9
TCGA-IA-A83S-01A
0 years, male, white, stage:'--, dead, 2609 days
11.9
TCGA-BQ-7053-01A
0 years, female, black or african american, stage:Stage III, alive, 1516 days
11.8
TCGA-UZ-A9PQ-01A
0 years, male, black or african american, stage:Stage III, dead, 2624 days
11.7
TCGA-IA-A40Y-01A
0 years, female, white, stage:Stage III, alive, 62 days
11.7
TCGA-5P-A9JU-01A
0 years, male, white, stage:Stage III, alive, 373 days
11.3
TCGA-2Z-A9JI-01A
0 years, male, white, stage:Stage III, alive, 1567 days
11.2
TCGA-HE-A5NF-01A
0 years, male, stage:Stage I, alive, 2582 days
11.2
TCGA-SX-A7SL-01A
0 years, male, stage:Stage I, alive, 823 days
11.2
TCGA-A4-7734-01A
0 years, female, white, stage:Stage I, alive, 27 days
11.1
TCGA-A4-8630-01A
0 years, female, white, stage:Stage I, alive, 436 days
11.1
TCGA-BQ-5880-01A
0 years, male, white, stage:Stage III, dead, 1314 days
11.1
TCGA-F9-A7VF-01A
0 years, female, white, stage:Stage I, alive, 73 days
10.9
TCGA-5P-A9K9-01A
0 years, female, white, stage:'--, dead, 589 days
10.8
TCGA-MH-A855-01A
0 years, female, black or african american, stage:Stage II, alive, 369 days
10.7
TCGA-HE-A5NI-01A
0 years, male, stage:Stage I, alive, 360 days
10.7
TCGA-G7-6795-01A
0 years, male, white, stage:Stage I, alive, 1194 days
10.1
TCGA-A4-7585-01A
0 years, male, white, stage:Stage III, dead, 1070 days
9.9
TCGA-IA-A83T-01A
0 years, male, white, stage:'--, dead, 2684 days
9.9
TCGA-B9-A44B-01A
0 years, male, black or african american, stage:Stage III, alive, 361 days
9.7
TCGA-5P-A9JZ-01A
0 years, female, white, stage:'--, alive, 2744 days
9.7
TCGA-5P-A9KH-01A
0 years, male, white, stage:'--, alive, 2051 days
9.7
TCGA-5P-A9KF-01A
0 years, male, white, stage:'--, alive, 845 days
9.6
TCGA-A4-7286-01A
0 years, male, white, stage:'--, alive, 554 days
9.4
TCGA-2Z-A9J7-01A
0 years, male, white, stage:Stage IV, dead, 139 days
9.4
TCGA-SX-A7SP-01A
0 years, female, white, stage:Stage I, dead, 496 days
9.3
TCGA-B9-A69E-01A
0 years, male, white, stage:Stage III, alive, 452 days
9.1
TCGA-Y8-A895-01A
0 years, male, white, stage:Stage I, alive, 484 days
9.0
TCGA-BQ-7044-01A
0 years, male, white, stage:Stage III, alive, 3760 days
8.9
TCGA-2Z-A9JQ-01A
0 years, male, white, stage:Stage I, alive, 778 days
8.8
TCGA-SX-A7SS-01A
0 years, male, white, stage:Stage I, alive, 1615 days
8.7
TCGA-AL-3466-01A
0 years, male, white, stage:Stage IV, dead, 293 days
8.6
TCGA-BQ-5890-01A
0 years, male, white, stage:Stage III, alive, 233 days
8.5
TCGA-GL-8500-01A
0 years, male, white, stage:Stage I, alive, 841 days
8.5
TCGA-4A-A93X-01A
0 years, male, white, stage:Stage IV, alive, 390 days
8.4
TCGA-IZ-8195-01A
0 years, male, white, stage:Stage II, alive, 677 days
8.4
TCGA-WN-AB4C-01A
0 years, female, white, stage:Stage I, alive, 1188 days
8.4
TCGA-MH-A560-01A
0 years, male, white, stage:Stage I, alive, 924 days
8.2
TCGA-AL-A5DJ-01A
0 years, female, white, stage:Stage III, dead, 1498 days
8.2
TCGA-GL-A4EM-01A
0 years, male, white, stage:Stage I, alive, 32 days
8.1
TCGA-BQ-7046-01A
0 years, male, white, stage:Stage I, alive, 2948 days
7.9
TCGA-V9-A7HT-01A
0 years, male, black or african american, stage:Stage II, alive, 965 days
7.7
TCGA-4A-A93Y-01A
0 years, female, black or african american, stage:Stage II, alive, 352 days
7.6
TCGA-BQ-5882-01A
0 years, male, stage:Stage III, dead, 658 days
7.6
TCGA-Y8-A896-01A
0 years, male, white, stage:Stage III, alive, 567 days
7.5
TCGA-BQ-7045-01A
0 years, male, black or african american, stage:Stage I, dead, 1468 days
7.4
TCGA-AL-3468-01A
0 years, male, white, stage:Stage II, dead, 2331 days
7.4
TCGA-BQ-5881-01A
0 years, male, white, stage:Stage I, alive, 1454 days
7.4
TCGA-BQ-5875-01A
0 years, female, white, stage:Stage III, alive, 2639 days
7.3
TCGA-J7-8537-01A
0 years, female, asian, stage:Stage III, dead, 321 days
7.1
TCGA-A4-A48D-01A
0 years, male, black or african american, stage:Stage I, alive, 379 days
7.1
TCGA-5P-A9K0-01A
0 years, male, white, stage:'--, alive, 677 days
7.0
TCGA-A4-8311-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.9
TCGA-2Z-A9JT-01A
0 years, male, white, stage:Stage I, alive, 684 days
6.9
TCGA-B3-4104-01A
0 years, male, white, stage:Stage II, alive, 1049 days
6.8
TCGA-BQ-7048-01A
0 years, male, white, stage:Stage III, alive, 2839 days
6.8
TCGA-BQ-7051-01A
0 years, male, white, stage:Stage II, alive, 1533 days
6.7
TCGA-B1-5398-01A
0 years, male, white, stage:Stage III, alive, 1251 days
6.6
TCGA-UZ-A9Q1-01A
0 years, female, white, stage:Stage I, alive, 730 days
6.5
TCGA-5P-A9JY-01A
0 years, male, white, stage:'--, dead, 1508 days
6.3
TCGA-B9-A8YI-01A
0 years, male, black or african american, stage:Stage I, alive, 374 days
6.0
TCGA-2Z-A9J2-01A
0 years, female, white, stage:Stage I, alive, 1795 days
6.0
TCGA-DZ-6131-01A
0 years, male, white, stage:Stage III, alive, 2429 days
5.5
TCGA-IZ-A6M8-01A
0 years, male, black or african american, stage:Stage I, alive, 497 days
5.2
TCGA-BQ-7060-01A
0 years, male, american indian or alaska native, stage:Stage I, alive, 214 days
5.1
TCGA-A4-A5Y0-01A
0 years, female, white, stage:Stage I, alive, 252 days
5.0
TCGA-B9-4617-01A
0 years, male, black or african american, stage:'--, alive, 35 days
4.8
TCGA-BQ-7056-01A
0 years, female, white, stage:Stage III, alive, 612 days
4.5
TCGA-P4-AAVM-01A
0 years, male, white, stage:Stage I, alive, 1539 days
4.0
TCGA-BQ-5886-01A
0 years, male, white, stage:Stage III, alive, 792 days
3.9
TCGA-A4-8518-01A
0 years, male, white, stage:Stage I, alive, 600 days
3.9
TCGA-5P-A9KE-01A
0 years, male, white, stage:'--, alive, 824 days
3.8
TCGA-A4-7287-01A
0 years, female, white, stage:Stage I, dead, 597 days
3.5
TCGA-A4-7915-01A
0 years, female, black or african american, stage:Stage II, alive, 7 days
3.4
TCGA-J7-A8I2-01A
0 years, male, asian, stage:Stage I, alive, 307 days
3.1
TCGA-5P-A9K3-01A
0 years, male, white, stage:'--, dead, 471 days
3.0
TCGA-Q2-A5QZ-01A
0 years, female, black or african american, stage:Stage III, alive, 428 days
2.5
TCGA-HE-7130-01A
female, stage:Stage III, alive, 1770 days
1.3
TCGA-Y8-A8S1-01A
0 years, male, white, stage:Stage I, alive, 404 days
0.9
Show allShow less
RENAL CELL CARCINOMA - Protein relative expression (CPTAC)
Number of samples
194
Samples
Sample ID
Sample type
nRPX
CPT0015730003
Tumor
0.6
CPT0077320001
Normal
0.5
CPT0078800003
Tumor
0.5
CPT0065430003
Tumor
0.5
CPT0085670003
Tumor
0.5
CPT0079230003
Tumor
0.5
CPT0015910003
Tumor
0.4
CPT0069000003
Tumor
0.4
CPT0086360003
Tumor
0.4
CPT0092190003
Normal
0.4
CPT0079270003
Tumor
0.4
CPT0081600003
Tumor
0.4
CPT0011410003
Tumor
0.4
CPT0000640003
Tumor
0.4
CPT0019130003
Tumor
0.3
CPT0010110003
Tumor
0.3
CPT0077490003
Tumor
0.3
CPT0012640003
Normal
0.3
CPT0069190001
Normal
0.3
CPT0075170001
Normal
0.3
CPT0084590001
Normal
0.3
CPT0023690003
Tumor
0.3
CPT0075130003
Tumor
0.3
CPT0001500009
Tumor
0.3
CPT0007320003
Tumor
0.3
CPT0006900003
Tumor
0.3
CPT0069160003
Tumor
0.3
CPT0017850003
Tumor
0.2
CPT0007860003
Tumor
0.2
CPT0000660001
Normal
0.2
CPT0066470004
Tumor
0.2
CPT0075720003
Tumor
0.2
CPT0066480003
Tumor
0.2
CPT0001510001
Normal
0.2
CPT0025170003
Tumor
0.2
CPT0065820001
Normal
0.2
CPT0025580004
Tumor
0.2
CPT0009000003
Tumor
0.2
CPT0025110003
Tumor
0.2
CPT0065870003
Tumor
0.2
CPT0088500001
Normal
0.2
CPT0017410003
Tumor
0.2
CPT0078930003
Tumor
0.2
CPT0009020003
Normal
0.2
CPT0079300001
Normal
0.2
CPT0001230001
Normal
0.2
CPT0019990003
Tumor
0.2
CPT0066520001
Normal
0.2
CPT0078990003
Tumor
0.2
CPT0025920001
Normal
0.2
CPT0012670003
Tumor
0.2
CPT0025050003
Tumor
0.2
CPT0065450001
Normal
0.1
CPT0012290003
Normal
0.1
CPT0001540009
Tumor
0.1
CPT0010120001
Normal
0.1
CPT0077500001
Normal
0.1
CPT0086970003
Normal
0.1
CPT0081990003
Tumor
0.1
CPT0084560003
Tumor
0.1
CPT0000890001
Normal
0.1
CPT0000870016
Tumor
0.1
CPT0088710001
Normal
0.1
CPT0092290003
Tumor
0.1
CPT0079510001
Normal
0.1
CPT0063630003
Tumor
0.1
CPT0006630003
Tumor
0.1
CPT0069010001
Normal
0.1
CPT0013790003
Normal
0.1
CPT0025290003
Tumor
0.1
CPT0014370004
Tumor
0.1
CPT0086030003
Tumor
0.1
CPT0063320003
Tumor
0.1
CPT0001190001
Normal
0.1
CPT0020130001
Normal
0.1
CPT0010160003
Tumor
0.1
CPT0006530001
Normal
0.1
CPT0092160003
Tumor
0.1
CPT0011240003
Tumor
0.1
CPT0078510003
Tumor
0.1
CPT0071150004
Tumor
0.1
CPT0012770003
Normal
0.1
CPT0001270001
Normal
0.1
CPT0012090003
Normal
0.1
CPT0087040003
Tumor
0.1
CPT0065690003
Tumor
0.1
CPT0078940001
Normal
0.1
CPT0064400001
Normal
0.1
CPT0088570001
Normal
0.1
CPT0026420001
Normal
0.1
CPT0001220008
Tumor
0.1
CPT0075570001
Normal
0.1
CPT0088640003
Normal
0.1
CPT0002270011
Tumor
0.0
CPT0023360001
Normal
0.0
CPT0079480003
Tumor
0.0
CPT0012080003
Tumor
0.0
CPT0014350001
Normal
0.0
CPT0000790001
Normal
0.0
CPT0079430001
Normal
0.0
CPT0079000001
Normal
0.0
CPT0075560003
Tumor
0.0
CPT0018250001
Normal
0.0
CPT0019160001
Normal
0.0
CPT0002370001
Normal
0.0
CPT0020020001
Normal
0.0
CPT0012920003
Normal
0.0
CPT0063330001
Normal
0.0
CPT0089040001
Normal
0.0
CPT0065810003
Tumor
0.0
CPT0086890003
Normal
0.0
CPT0025060001
Normal
0.0
CPT0086830003
Normal
0.0
CPT0081620001
Normal
0.0
CPT0078670001
Normal
0.0
CPT0023710001
Normal
0.0
CPT0025880003
Tumor
0.0
CPT0077140001
Normal
0.0
CPT0092310003
Normal
0.0
CPT0012570003
Normal
0.0
CPT0020120003
Tumor
0.0
CPT0007470001
Normal
0.0
CPT0092800003
Normal
0.0
CPT0082010001
Normal
0.0
CPT0009080003
Normal
0.0
CPT0086370003
Normal
0.0
CPT0092730003
Tumor
0.0
CPT0006730001
Normal
0.0
CPT0088780001
Normal
0.0
CPT0014130001
Normal
0.0
CPT0087050003
Normal
0.0
CPT0079410003
Tumor
0.0
CPT0006950001
Normal
0.0
CPT0063640001
Normal
0.0
CPT0025610001
Normal
0.0
CPT0001550001
Normal
0.0
CPT0092740003
Normal
0.0
CPT0092790003
Tumor
0.0
CPT0088760003
Tumor
0.0
CPT0012370003
Tumor
0.0
CPT0025230003
Tumor
0.0
CPT0088900003
Tumor
0.0
CPT0066430001
Normal
0.0
CPT0026410003
Tumor
0.0
CPT0089020003
Tumor
0.0
CPT0089480003
Normal
0.0
CPT0088920001
Normal
0.0
CPT0086870003
Tumor
0.0
CPT0064370003
Tumor
-0.1
CPT0025350003
Tumor
-0.1
CPT0007870001
Normal
-0.1
CPT0078840001
Normal
-0.1
CPT0065750003
Tumor
-0.1
CPT0017450001
Normal
-0.1
CPT0088630003
Tumor
-0.1
CPT0010170001
Normal
-0.1
CPT0001350001
Normal
-0.1
CPT0014160003
Tumor
-0.1
CPT0088970003
Tumor
-0.1
CPT0076350001
Normal
-0.1
CPT0021240003
Tumor
-0.1
CPT0077110003
Tumor
-0.1
CPT0014470001
Normal
-0.1
CPT0076330003
Tumor
-0.1
CPT0081880003
Tumor
-0.1
CPT0078530001
Normal
-0.1
CPT0001260009
Tumor
-0.1
CPT0086820003
Tumor
-0.2
CPT0006440003
Tumor
-0.2
CPT0079380003
Tumor
-0.2
CPT0077310003
Tumor
-0.2
CPT0009060003
Tumor
-0.2
CPT0012900004
Tumor
-0.2
CPT0015810003
Tumor
-0.2
CPT0024670003
Tumor
-0.2
CPT0088480003
Tumor
-0.2
CPT0088690003
Tumor
-0.2
CPT0023350003
Tumor
-0.3
CPT0012280003
Tumor
-0.3
CPT0024680001
Normal
-0.3
CPT0000780007
Tumor
-0.3
CPT0065930003
Tumor
-0.4
CPT0089460004
Tumor
-0.4
CPT0086950003
Tumor
-0.5
CPT0078660003
Tumor
-0.5
CPT0078830003
Tumor
-0.6
CPT0088550004
Tumor
-0.6
CPT0002350011
Tumor
-0.6
CPT0014450004
Tumor
-0.6
CPT0012550003
Tumor
-0.6
CPT0001180009
Tumor
-0.7
CPT0001340003
Tumor
-0.9
CPT0012180003
Tumor
-1.0
CPT0079180003
Tumor
-1.2
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RENAL CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
