MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.4 nTPM
HPA Brain:33.5 nTPM
GTEx:13.4 nTPM
FANTOM5:42.9 Scaled Tags Per Million
Pig:22.5 nTPM
Mouse:14.4 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 33.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.7
1870 Female, age 42, unknown 33.2
1833 Male, age 53, unknown 30.4
1830 Male, age 51, unknown 28.9
2219 Male, age 76, both hemispheres 28.4
2411 Female, age 72, unknown 28.4
1827 Male, age 72, unknown 26.2
2666 Male, age 74, left hemisphere 25.8
2828 Female, age 72, unknown 22.9
2019 Male, age 18, unknown 22.7
2586 Male, age 75, left hemisphere 20.0
Dorsal raphe nucleus
nTPM: 28.4
2016 Female, age 72, unknown 30.3
2298 Female, age 72, unknown 28.8
1828 Male, age 53, unknown 28.1
2750 Male, age 76, both hemispheres 28.1
2047 Male, age 72, unknown 26.8
Inferior colliculus
nTPM: 30.2
2849 Male, age 72, unknown 35.8
2097 Female, age 72, unknown 28.5
1848 Female, age 42, unknown 28.2
1890 Male, age 53, unknown 28.2
Median raphe nucleus
nTPM: 33.3
2220 Male, age 76, midline 33.3
Periaquaductal grey, anterior
nTPM: 25.5
2502 Female, age 75, unknown 27.0
1947 Male, age 18, unknown 26.7
1795 Male, age 51, unknown 22.8
Periaquaductal grey, dorsal
nTPM: 33.5
2850 Male, age 76, both hemispheres 40.5
1840 Male, age 53, unknown 34.5
1831 Male, age 72, unknown 30.8
2464 Female, age 72, unknown 28.4
Periaquaductal grey, lateral
nTPM: 32.2
2140 Male, age 76, both hemispheres 35.6
2272 Male, age 74, both hemispheres 31.4
2053 Male, age 18, unknown 29.6
Pretectal area
nTPM: 28.4
2825 Male, age 18, unknown 33.8
2224 Female, age 72, unknown 32.3
2273 Male, age 74, both hemispheres 32.3
2316 Male, age 76, right hemisphere 30.5
2667 Female, age 75, unknown 30.2
1815 Male, age 53, unknown 26.6
1817 Female, age 42, unknown 26.5
2407 Male, age 75, both hemispheres 26.4
1944 Female, age 72, unknown 25.2
1816 Male, age 51, unknown 24.7
2007 Male, age 72, unknown 24.5
Red nucleus
nTPM: 26.7
1821 Female, age 72, unknown 30.0
2725 Female, age 75, unknown 29.4
2503 Female, age 72, unknown 28.4
2823 Male, age 76, right hemisphere 28.1
1954 Female, age 42, unknown 27.4
1865 Male, age 51, unknown 27.2
1904 Male, age 53, unknown 26.7
2227 Male, age 72, unknown 25.3
2769 Male, age 72, unknown 25.3
2584 Male, age 75, left hemisphere 25.2
2588 Male, age 74, left hemisphere 24.5
2785 Male, age 18, unknown 23.4
Substantia nigra
nTPM: 29.0
2241 Male, age 72, unknown 36.5
2699 Male, age 18, unknown 35.2
2409 Female, age 72, unknown 32.9
1916 Female, age 42, unknown 30.1
1851 Male, age 51, unknown 28.5
1889 Female, age 72, unknown 27.3
1941 Male, age 53, unknown 26.4
2665 Male, age 74, both hemispheres 26.2
2583 Male, age 75, right hemisphere 24.1
2590 Female, age 75, unknown 23.2
Superior colliculus
nTPM: 26.9
1839 Male, age 51, unknown 31.1
2587 Male, age 74, left hemisphere 29.4
1895 Male, age 76, right hemisphere 29.1
1913 Female, age 42, unknown 27.9
2668 Female, age 75, unknown 26.5
1995 Male, age 72, unknown 26.1
1796 Male, age 53, unknown 26.0
2087 Female, age 72, unknown 24.9
2261 Male, age 18, unknown 24.9
2664 Male, age 75, both hemispheres 22.6
Ventral tegmental area
nTPM: 29.3
2021 Male, age 53, unknown 31.3
2223 Female, age 72, unknown 31.3
1915 Female, age 42, unknown 29.6
2218 Male, age 76, both hemispheres 29.5
1942 Male, age 51, unknown 29.0
2410 Female, age 72, unknown 25.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 13.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.4
Samples: 139

Max nTPM: 26.1
Min nTPM: 7.0
Std nTPM: 3.3
Median nTPM: 12.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 26.1
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 25.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 22.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 21.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 20.1
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 19.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 19.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 19.5
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 19.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 18.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 18.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 42.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 42.9
FF:10158-103A5 76 years, female 42.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 22.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 20.7
Samples: 4

Max nTPM: 24.9
Min nTPM: 14.0
Sample A Female 24.2
Sample B Female 19.6
Sample C Male 24.9
Sample D Male 14.0
Midbrain
nTPM: 20.0
Samples: 4

Max nTPM: 22.5
Min nTPM: 17.3
Sample A Female 18.5
Sample B Female 22.5
Sample C Male 17.3
Sample D Male 21.5
Periaqueductal gray
nTPM: 22.5
Samples: 3

Max nTPM: 24.5
Min nTPM: 21.2
Sample B Female 21.2
Sample C Male 24.5
Sample D Male 21.7
Superior colliculi
nTPM: 18.2
Samples: 4

Max nTPM: 21.6
Min nTPM: 15.8
Sample A Female 21.6
Sample B Female 16.5
Sample C Male 15.8
Sample D Male 18.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 14.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.5
Samples: 4

Max nTPM: 15.9
Min nTPM: 13.7
Sample A Male 13.8
Sample B Male 14.4
Sample C Female 15.9
Sample D Female 13.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69134481 Antisense, RP_050321_03_A03, Mouse strain C57BL/6J (56 days, male) 0.1

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